Array 1 63506-64614 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUYA01000082.1 Pseudoalteromonas luteoviolacea CPMOR-2 contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 63506 28 100.0 32 ............................ CCTGATGTTGTTGATGCACTTATAACTGACAA 63566 28 100.0 32 ............................ CATATCAGAGCCAAAATCATACGAACCGCTTG 63626 28 100.0 32 ............................ GATAGGCACGGTTTATCTATAGAGCAAGCTGG 63686 28 100.0 32 ............................ CATACAAGCAGCTTAACGACAGGCTTAGTGAT 63746 28 100.0 32 ............................ ACTTTCAGAAAATGAAACATTAGACGCTTCGT 63806 28 100.0 32 ............................ GCCAGGAATGCCCAAATAGCAGACTTTTGATG 63866 28 100.0 32 ............................ AATGAGAAAAATCTAGATGCGGTTGTTAGCAA 63926 28 100.0 32 ............................ GTGATTGTGAGCGTTATACTTATCTCTCATAG 63986 28 100.0 32 ............................ AGCCCTAAGTGCTGGTAAAAGCCTGTACCAAA 64046 28 100.0 33 ............................ CGTGATGACGATTTCGCACACATATCAACATTA 64107 28 100.0 32 ............................ CCCAGAAAGGGTATTTTGAGCTGCACAAAAGC 64167 28 100.0 32 ............................ AATAACAGCGAGTGTTCTAGACCCAATTAATT 64227 28 100.0 32 ............................ AAAGTGAGCGGACCTAAACATATAGAAGTTTA 64287 28 100.0 32 ............................ TAAACAACCTCTCTGAAGAATACCGAAAGCTT 64347 28 100.0 32 ............................ AGAAGCGACCATAGCGCCAGTAGCTATACCGA 64407 28 100.0 32 ............................ CTACAGAGCCGCAGCACCGCAACGAGCTGCCT 64467 28 100.0 32 ............................ GCTTGAAACGCAGACGATTAAAGGTCGTGTGT 64527 28 100.0 32 ............................ CCGCTGAGTCTGTGACATTTCGTTCGATGTTA 64587 28 92.9 0 ..................T.....T... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.6 32 GTTCACTGCCAAGTAGGCAGCTTAGAAA # Left flank : ACCGACACCAAACGCTTTAAACACTATGCCAAGGAAGTCGAACTCACCAGTTATATCAACCAGTTTTTAGACGACGACGCATTTCGTAATATCGCCCTTGGCCAAAACTATTTTGACCTGATGAATCTGGATTTCGAAGCACCAGAGATTTGTAAAGGGTGATGGGATGCTTGTTTGAATGAAAAACAGCAAGCTATAAAAGAGCGTGTGGGAGTAATTGAATGCTGAATCTTTTTTAAACAATAAAAGTGCTGTGAAAACATTGACTAAATGTATTTACTCGGGGAGAAACTGATTTTGTGCTTTAAGAATTTGACAAATGTAAGGTGCACTTAAACTTGGTGTGTACGGCTTTCAGTGGGGAGTTTTACCTTGTTTTAAACAAGGTGAACTTAGTCTTTAAAAATCAATGGCTTATATTTTTAGTAAAAAAATAGGGTATTTTGAGAAAATCTTTACTTAAGGGCTGTTTTTGTATTACTTTTTGGATATTTCTTATA # Right flank : ATTAAATCAAATTATACATCAGCGTAAACACATCCCTGATGACTCTCACCCAGAGAAAGCATCCATGCTTCCTCGTTCAAACCTAGCCAAGCTGCGCGCACTCGCTTGACTCGAGACGGTTTTCACCCACATAGGCAACTTAGGTGATGAGTGACCGAAACGAAGTTTCGCAGCGCAAGGAGTGAGTCGCTTAGAATAAGGTCATGGATGACCGATGTAATCAAGCTGCATGTAGGAGGGTATGTAGCTATTTCTAAACCCTCACTGTTGTATAGTCTATTTAGAATACTCACTCTTTAGTTGTTGCTGATCAATGACAGCCTTTGTTGTCTCTGATACATTTATTTTACGTTTAATTTACTGAAATTTGTGTATGCAGGCTAAGGAAGAGCAATATTTTAGATATATTGAGGCGGTGTTATTTTGGCAAGGAGAGATCCAAACAGGCACTTTTCAAGATAAGTTCAAACTATCAAGACCCAGTGCTAGGCGTTACCTAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCAAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCAAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 74297-76329 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUYA01000082.1 Pseudoalteromonas luteoviolacea CPMOR-2 contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 74297 28 100.0 32 ............................ ATCCAGCTTGATATGTCTAAGAATCGCGAGCT 74357 28 100.0 32 ............................ ATCAAACAATGTATTCAATGTTAACCCCATAT 74417 28 100.0 32 ............................ ATTCATGGTGGCGATACCTTCGCGCATATCCC 74477 28 100.0 32 ............................ CACCAACTGGCTATCTTCGTAAATCTCAGAGA 74537 28 100.0 32 ............................ CTGAGCAGGTGCTGCTTCATATGTTCTGTTTT 74597 28 100.0 32 ............................ AACACCATCAGCCATTGAGCGTGTTATAGTTT 74657 28 100.0 32 ............................ AAAAGTGTCAAACGGAGCTGCGGTATCTTCTT 74717 28 100.0 32 ............................ TGAACGCGATATTAAACAAAAGTTTCTCTGCT 74777 28 100.0 32 ............................ AGTTTCAACAATGCAGTAAACACTATCTAGAG 74837 28 100.0 32 ............................ GCGATTAACAGTGCGAGGGATGACGTTCTCGT 74897 28 100.0 32 ............................ ACCCATCAAACGTTGGTCATTTAATAGAGAGC 74957 28 100.0 32 ............................ TTGCTCGTCTTCATCTTCACAACCGTCATAGC 75017 28 100.0 32 ............................ TATATCCACTCTCAGGTAGCCATCTGCATTCT 75077 28 100.0 32 ............................ GTTGTAGGTGCTATCGGCTTATCAAAAGTTTT 75137 28 100.0 32 ............................ TTCAAGGTATGCGGTAATGCGATGGTTGCAAT 75197 28 100.0 32 ............................ GTTATAGCCAGTGGCCATGATGTGAATAGTCC 75257 28 100.0 32 ............................ TGTTTTGTACGATATTTCAATAGCTTTTCTTT 75317 28 100.0 32 ............................ TTAGCAAATCTGCACCACTCACCAAAGCTGCA 75377 28 100.0 32 ............................ ATCCTCGCAAAAGTCGGCAATTTCGATATTTT 75437 28 100.0 32 ............................ TGCATCATAAATTCAAAAACAATAGAGAGCAG 75497 28 100.0 32 ............................ ACAGGGACTAACGTACCTATTACAGTAGAAAC 75557 28 100.0 32 ............................ TCACTTACCAGATTTGCATGAGAAAAAAGAAA 75617 28 100.0 32 ............................ ATTAAAACATGGCCCGAGCACAACTATAGACT 75677 28 100.0 32 ............................ TCAGCGCATGATTGTTGGCGGAGATGTTAAGA 75737 28 100.0 32 ............................ GAACAAACTGACAACTTAATGATTTTGTCGAG 75797 28 100.0 32 ............................ TGTAATTGTATTAATGAGCGCATTAGCTTTAG 75857 28 100.0 32 ............................ ATTGCTAGCCTTTTCAATAATTTCAATTAAAG 75917 28 100.0 32 ............................ GAGCTCACCAGATTATGAGCAAAGAACATTTA 75977 28 100.0 32 ............................ ATCATCTGTGCCACATGGCATGCGGTCAACAA 76037 28 100.0 32 ............................ GCACCAGCCACGCCAGCCGCACCAGCCAAAAC 76097 28 100.0 32 ............................ TAGCCTTATTGTTAAGCTCAACCTCTCTTAAC 76157 28 100.0 119 ............................ TTAAATCAAATTATAAACCAGCGTAAACACATCCCTGATGACTCTCACCCAGAGAAAGCATCCATGCTTTCTCGTTCAAACCTAGCCAAGCTGCGCGCACTCGCTTGACTCGAGGCGGT 76304 26 89.3 0 T.....--.................... | ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 33 28 99.7 35 CTTCACTGCCACACAGGCAGCTTAGAAA # Left flank : CCAAAGAAGCCACTTGGGTGAGTTTTTCTCGTCAACATATAAAGTCGCCTGAGCGTATTGAGCGTGAGATGCAAAAAAAGGCTGAACTATGGTCTGCTAAAAGTGGTAAATCACTTGAGGAGTGCTTACTTGCACTTGAAAAAAGCAAACCAGATATCCATAGCAAATTGCCATTTATTTATTTGCATAGTCAGCAAACGAAAGCACGAAAGCCGGATAAAAACAGTAAGTTCCCAATGTTCATAAAAAAGCAAGAAGTGGATACTCTTTATCAAGGATTATTTGATTGTTATGGCTTAAATAGTAAACGCAATAAAGATAATGACATTGGCTGCGTACCTCACTTTTAACCAATAAAGGGTGTTTTTACCCTTTATTTTCGCTCTTTTAAAATCTGCATATAATACAAGGAGTTGCGATAGGTTGTTTTTAACAAGGTAAAAATAGGATTTTTACTTTAATGGTCTGTTGCAACTTATTTTTTTTTCATTTACTCTATA # Right flank : ATTAAATCAAATTATAAACCAGCGTAAACACATCTCTGATGACTCTCACCCAGAGAAAGCATCCATGCTTTCTCGTTCAAACCTAGCCAAGCTGCGCGCACTCGCTTGACTCGAGACGGTTTTCACCCACACAGGCAGCTTAGGTGATGAGCGACCGAAACGAAGTTTCGCAGCGCGAGGAGTGAGTCGCTTAGAATAAGGTCATGGATGACCGATGTAACCAAGCTCCATGGAAGGATTTCAGCTCCGAGTTAGCTATGTATTCCGCTTCACTGCCATACAGGCAGCTTAGAAATTGAATCAAATTATACATCAGCGAAAACACATCCCTGATGGCTCTCACCCAGAGAAAGCATCCATGCTTTCTCGTTCAAACCTAGCCAAGCTGTGCGCACTCCCTTGACTCGAGATGGGTTTCAGCTTCGTGCTAGCCAGAGTTTATGTTTGGGTCTATATATCGGTCCCATAAAAATTGTAATGGGGGTTTCCACTTTGGCGCT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //