Array 1 1033-1266 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUY01000045.1 Alkalihalobacillus halodurans strain DSM 497 Scaffold45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1033 32 100.0 36 ................................ TGCTACTTCATGCGGCTGCTACGGAGTGACGGCAAA 1101 32 93.8 36 ...........T...A................ AATGTCTTGATTTTGCCATATGCCGTACCTGTGTAA 1169 32 93.8 34 .............C.A................ CGTCAGCGTACGAAGATCCTTCATAGCCGTAGAA 1235 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 96.9 36 GTCGCACTCTACATGGGTGCGTGGATTGAAAT # Left flank : ACAGCGATGGTTGCGTTGATGGATAAAATTCCGCTCAAAACACTGATTGGTCGCGTTGAAAAATGGACAGAACCAAAAGAAGAACGTCCTCCAAAGTATTTTGTGGAGAAGGTAGAAAGTACAATTGGCGAAGCGACACGTAACAACGTCATGTATCTCAAACAAAGAGCGAATATTCCAGTGTATCGAGCACTGAAAGACTTGAAAGGCTTTTAAAAACCATAAGATTCTAGACAGAGGAGAACCATAAATTCATAAATTCGCTTACACTCATGAGGATGGAAAATACTCCTCCCACAAAAGGTTGACACAATCGAGTTGATGGTGTGATTTGCGAGACTTTTTGATTTTGTGTATAATTCATTTCGAGTCCTCCTTCGTACTAATTAAGGATCAGTAGCTACTGATACCTCGTATCGTACAGGAGGGCTCTTTCTGTTTCAAACCTCAAATTCTTTCATTACAGGAATGCTCCTTTATGTTTTTTTAAATACTAAACC # Right flank : TTTTGATATTGCCGTATTTCTATCTCCGTTCGCTGCGTCGCACTCTACATAGCGCCCCTGCACCAACATCATCGAGCGGTGACACCCGATGACACCTAAAACTTTCATCATACGTGTCGCCATTCTCCATAAAGTGGCCCCTGTAAACAAGCGAACTTATACTCATGTGAAATAACCTTTTCTCCTTTTAAACCGAGAGAAGGTTATTTGCTTTCTCTATCTAAATTCCCATGCATCTAATGAAAACGACCAAACACGGTGACTTCCCCAAATAAAAATGGGCCTCGCGAAATCGTTATAGTCTTTTACCCTACCTTTAGACCGCAACTAAAGGACAATAAGCTAGAAAAAGAGGGAATTATGTCTATATTTTGATGATTTTTGGCGCATAGTCTGGTAAAATGTACATAATTAAGTAAATCTATTATAGGAGATTCGATTATGTACATTGCCCATATTCGAGAGGTTGATAAGGTGATTCAGACCCTTAAAGAGCACTT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 10128-13343 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUY01000045.1 Alkalihalobacillus halodurans strain DSM 497 Scaffold45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 10128 32 100.0 34 ................................ CTAACGAATTAAATTACATCGTCGAAGAAATCAC 10194 32 100.0 34 ................................ TGCGACTCCCCACTCACCATCACAAACGATCCTT 10260 32 100.0 34 ................................ GCGCCTCTTCCATCGTGATCCCCTCAGCCTTGGC 10326 32 100.0 35 ................................ AAGACATTAGCTTTTTTCTAAAAGCAAGAAAGCGA 10393 32 100.0 36 ................................ TTTTGTGATGAGATTCGTGGAGCCCAAGCGTTCAAC 10461 32 100.0 34 ................................ TTTCGCATAAACAGACATAGCTTTGACTTGCCCT 10527 32 100.0 34 ................................ TAATTGAAGTAGCTTCAAGGCTGAAAGAGGAACG 10593 32 100.0 34 ................................ ACCGTATGCGTATTGTTAAGGTTTTGGAAGAACA 10659 32 100.0 34 ................................ CAGAAGCGAGGGAGCTAGCGGACAAGATTACAAC 10725 32 100.0 33 ................................ CAGTCGGCTTATATCAAATTTTTAGAAAAAGAA 10790 32 100.0 34 ................................ CCTCCGCCTTTGTAGTAAATCTTTTTATCGCCAG 10856 32 100.0 33 ................................ ATTAGAGCGAAATCGCTAAAGAAAGTATTTAAA 10921 32 100.0 34 ................................ ATACTCACTACATTGCAAGATGTAGGCGCTACTG 10987 32 100.0 34 ................................ GCCCGAAAAACCTTGAAGTTGTCTGGAAGGACAC 11053 32 100.0 35 ................................ TGATGACGTTTCTATATCATCTAATGGTTTTATAC 11120 32 100.0 34 ................................ TGGCTATCATCGCAGGATACATTAGTTTTTTGGG 11186 32 100.0 35 ................................ TTTGGATGAAACCATGAGAGAAATGCAGGCAGAAA 11253 32 100.0 35 ................................ CATCTTTGCCAACTCCGTCACCGCGAATCAGATAG 11320 32 100.0 34 ................................ TTGCAGCAAACATTCTATGTTTTAAAAAGCGAAA 11386 32 100.0 33 ................................ TCTCTTGTACCCCCTCAAGTTAGAGGAGATAAT 11451 32 100.0 34 ................................ TTCAATCCCGACCGCAATTCCTTCTGGGATCCAT 11517 32 100.0 34 ................................ GTCTATTGTAAACTCACCTAAAGTATTATAAAAT 11583 32 100.0 34 ................................ TGAGCCACACTAGAGTCTACCTATTCCTCCACCG 11649 32 100.0 35 ................................ GATTAAGTGATGTAAGTTGCCGTATTCGTCGACTC 11716 32 100.0 34 ................................ ATTTGCTACATCGTGATATGTTCCCGTCCATTGT 11782 32 100.0 34 ................................ ATTCATATCGATCCACAGATCGCCTAAGGCGGGA 11848 32 100.0 34 ................................ GATACCACACGATTTATAGATACCATCGATGACG 11914 32 100.0 35 ................................ TCGTGAGCTTTCAATAGCGGTGTTAGCTGATCCAT 11981 32 100.0 34 ................................ CTTGCGTGACTTTCTTTTCCGCGTATTCTTGTAC 12047 32 100.0 35 ................................ TCCGCTTTCAAACCCTCTTACATAGTTCCTTCCAC 12114 32 100.0 34 ................................ AATTAAGTGATGTAAGTTGCCGTATTCGTCGACT 12180 32 100.0 34 ................................ GCCCCGCCAATGGCTTTATCCATTCCACCTTTAG 12246 32 100.0 34 ................................ CTCCTGGTGAGTTGACATATAGATTAATAGTGTC 12312 32 100.0 34 ................................ CTCCTGGTGAGTTGACATATAGATTAATAGTGTC 12378 32 100.0 35 ................................ CTCGAATAACCTAAACCTCGTTGAATACTTATCTC 12445 32 100.0 35 ................................ GTAACTTATCTGCAGATAGAATATTCTTGTACCAA 12512 32 100.0 34 ................................ AATTAAGTGATGTAAGTTGCCGTATTCGTCGACT 12578 32 100.0 37 ................................ CTTCTGTGTCACGGTACTTATCGACTTCAAAAAGCAC 12647 32 100.0 35 ................................ CCGTCCATTGTCTGACATGACGTTGTGACATCCAT 12714 32 100.0 33 ................................ CATCCTGTAAGGTTTTATTTAGCTCGATAAAGG 12779 32 100.0 34 ................................ ATCCGTACCATACAATTCTTGCGTAAAAAATGTT 12845 32 100.0 35 ................................ TATACAGCGGAAATCCAAGAAGCCTTTAAGCCAGA 12912 32 100.0 34 ................................ TTTTTTAGCACGCTCATATGCACTTATAATGTCC 12978 32 100.0 36 ................................ GAGAAAGTCAACGTATCGTGCTGTGATTCTGCGCCC 13046 32 100.0 34 ................................ TTTCGAGAAAGTCAACGTATCGAGCGGTTATCCT 13112 32 100.0 34 ................................ TCCTGCCCACTCTAATAATCTAGCTTGGTTTTCT 13178 32 100.0 35 ................................ AAGATAAAACTCAAAGACTTGAAGGACGTGAACAG 13245 32 100.0 35 ................................ TAACACAAGCCGGTTTAATTCTAGTGGCGAAAACG 13312 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 49 32 100.0 34 GTCGCACTCTTCATGGGTGCGTGGATTGAAAT # Left flank : CGCCATTTCTGTGGAAGTAGGTGAAAGCATGCTTGTTTTAATTACGTATGATGTCCAAACCTCAAGCATGGGAGGCACGAAAAGGCTTCGAAAAGTGGCCAAAGTGTGCCAAAATTATGGACAACGAGTGCAAAACTCTGTCTTTGAGTGCATTGTGGATTCAACTCAATTAACGTCGTTAAAATTAGAACTCACTAGTTTAATTGACGAAGAAAAAGACAGTTTGCGCATCTACCGATTAGGAAACAACTATAAAACCAAAGTAGAGCATATTGGAGCCAAGCCATCTATCGATGTAGAGGACCCTCTTATCTTTTAATGGTGCGAACCCCAAGCGCACATAAAATCCCTAGAGGACCCGCACCAAAAAACGAGCATATTATGTGTAAATATGTGATACTATGTAATAGAATGTAGATCACAACATGGAAAAAGAACAGAATGAACGAAAATTTCCTATTTTATCAAAGTGATTTTCTAGAATCTAGGGGATTTTCGCT # Right flank : TATGCCTCTCAATCATGCTTGATCCGGGTGACACTCATGAACGTGTATTCGAATAAAATCAAGTCAGAGGTTAAAAGACCTTACAGACTCGGAACGGAAATTACTGATTGTCTTTTATGATTAATGCAGGCAAGCCGCTTTCCCTTCCAATCATCAGCCTGCGTATAAGAAGAAGTGAGGGCGAGATTCGCAAAATGGTGGACGATTTATGTAAACGGGGATGGCTAGCCCCTGAAAATGGTCGCTTAAAGGTGATGAGGAGTGTAATAAAATAAGACCGCCCCTCACTAGGTAGAGACGGTGATTTTCCAATTCTTTTGTATAGTTGTTTAATCCAAAAAACTAAACATCTCTAAATTTTCCAAGTACCATTGGAAATATTCATCCTCTGGATCTTCCTTATAATCTAACAGACCAGCCTCAACCTTACCAGCGATGACTAACGCATTAATATAACGGCCAATCTTTTCACATTCGCGTACAATGAATTCGGTGACATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 33766-32884 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNUY01000045.1 Alkalihalobacillus halodurans strain DSM 497 Scaffold45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 33765 29 100.0 36 ............................. TAAAGTTGAGTACGGCCTTGCGTTGGTGGCCCGCGA 33700 29 100.0 36 ............................. AGGACGGTAAATCGTCCTCTCTTCACCCCTCGATCA 33635 29 100.0 37 ............................. TGCAGAAACGCTAATCGACCAAAATGCGCAGCAGATC 33569 29 100.0 36 ............................. GAGCGAGTCCGGTTATCCGTTCATTATGTACTCTGA 33504 29 100.0 39 ............................. GCGACGCCTACATTCCTGAACGCAGGGAGAAAACGACGC 33436 29 100.0 38 ............................. GAAAGCTCGACGCAGGTGCTGTGACAACTCAAAAAATA 33369 29 100.0 37 ............................. TACACTGATCCCGTAACCTATCGTATAATCTTGAATC 33303 29 100.0 35 ............................. GAAACAGATCTTGATATTTCATTAAATCAGGACCG 33239 29 100.0 36 ............................. GAGGTGTCATAATGGGACTTGCGGAGGAATTACGTC 33174 29 96.6 36 ..................T.......... TGAACTTACAGACGAGCATAAGGGAGATGACTTTGT 33109 29 100.0 36 ............................. GTGGCAGAATAATGCAGTAAAAGCGCAGTGAAAACG 33044 29 100.0 37 ............................. AATAAGGACAATAGGACAACTGAAAAATGAGGTAAGT 32978 29 100.0 37 ............................. TCACAATTGCGGCCATCGTCACATGTCTATTCTTGAT 32912 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ======================================= ================== 14 29 99.5 37 GTTTTATCTGAACTTAGTGGGTTATAAAT # Left flank : CGCCCTTGATTGACCTCTGAATAAACCATTGGTGTGTTTGTCAAGAGCGATAGCGTGGCATTTCCACCTAATAAATGGTAGGTAGTATGAACCGTGCTAGTTTTTCATAGAACTTTTGACACTACCGATACTTAGATTATAAGTTACTTCACTATAACTGTCCAAGTCCTCTAAGGGGCTATAGA # Right flank : TTGTATCTCCCCTTCTCGTTTAGTGACAAGGGATACGTTTTATCTGAACTTTGTGTAAATGTCTCTTTTTGTTTCTATAAAAACATGCACTTTTATCGTTTTGACATGGATCTCCGTTGCCAGTAAACTAAAAGGAAAGTCAAAAAGGAGGCGGTGCTATGGGAGATGTGAGACGTGATTTACAAAAAGTCGAACGGATTTTTACGATTTTGAACCTGTTAAGAGAGCGAGACACGATTACAGCAAGTGAGTTGGCGGAATATTGCGGAACTACTCAGCGGACAATCTATCGTGACATGGCATTGCTTGAAAAAGTAGGCGTGCATTACGTAACCGAAGGAAAGAATGGGTATCATTTCATTTCTGGTCCCGTTGTACCACATCGTAAACTGACTCAAGAGGAATGGATGGCCCTTACCGTGTATCCATTAGTTACAAATGACTTTCTCCATAATGATCATCCAGTACACTACGCCTATCGTGCAGGATTTGAAAAATTA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTTAGTGGGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //