Array 1 123-639 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNA01000285.1 Salmonella enterica strain BCW_4946 NODE_285_length_692_cov_1.60548, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123 29 100.0 32 ............................. CCCAGAAAAGTTTGTTTAGGCAATCAAGCCCC 184 29 100.0 32 ............................. GCGTATGAGGGCGCGCAACAGGCGATGCGTGA 245 29 100.0 32 ............................. GATTTACTAAGGTCAACAAGGGATTGAATTGG 306 29 100.0 32 ............................. CTCATGCGCAGCACTGGATCGAGAGCGAAGGG 367 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 428 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 489 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 550 29 96.6 32 ......G...................... GGGATCGCGTTGGCGGTCGCATCCGTTGCCGT 611 29 93.1 0 .....A......T................ | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGTG # Right flank : TACCAACAATTCAGCGTTACGCCAACGGTAACGTGTTCCCCGCGCCAACAAGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 123-1738 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNA01000002.1 Salmonella enterica strain BCW_4946 NODE_2_length_181591_cov_8.85684, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 123 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 185 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 246 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 307 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 368 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 429 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 490 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 551 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 612 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 673 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 734 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 795 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 856 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 917 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 978 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 1039 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 1100 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 1161 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 1223 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 1284 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 1345 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 1406 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 1467 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 1528 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 1589 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 1650 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 1711 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18021-19918 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYNA01000002.1 Salmonella enterica strain BCW_4946 NODE_2_length_181591_cov_8.85684, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18021 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 18082 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 18143 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 18204 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 18266 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 18327 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 18388 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 18449 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 18510 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 18571 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 18632 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 18693 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 18754 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 18815 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 18876 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 18937 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 18998 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 19059 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 19120 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 19181 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 19239 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 19300 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 19361 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 19422 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 19483 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 19544 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 19605 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 19666 29 100.0 11 ............................. CGGCCAGCCAT Deletion [19706] 19706 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 19767 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 19828 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 19889 29 93.1 0 A...........T................ | A [19915] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //