Array 1 6281-4430 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXHT01000087.1 Riemerella anatipestifer strain CCUG25010 Scaffold87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 6280 36 97.2 30 .................G.................. ATCGCTGTATTTCAGGAAAAAGGAAAGCGA 6214 35 86.1 80 ...................-..C.T...T..A.... TCCATTGAAAATACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACAAACATTTTTTGCATCCGTAGATGAGAAAG G,T [6181,6192] 6097 35 86.1 80 ...................-..TT....T..A.... TCCGCTGAAAACAACAACGAAGCAGTGAGTAAAATGAGAGCAGTCCCAACAGTTTTATTTGGATTGTTCAAGATACGACC G,T [6064,6073] 5980 35 86.1 79 ...................-..TT....T..A.... TCCATTGAAAATACAACGAAGCTGTGAGTAAAATGAGAGCAGTCTCAACACGCCATTGTGCCGATAAAATATAGGCTCT G,T [5947,5956] 5864 35 86.1 81 ...................-..TT....T..A.... TCCGCTGAAAATAACAACAAAGCCGTGAGTTAAACTGAGAGCAGTCCCAACAGTTACTTTTGCGAGCAATAGCCCTGCGAT G,C [5831,5840] 5746 35 86.1 80 ...................-..CT....T..A.... TCCGCTGAAAATACAACAAAGCCCGTGAGTAAACTGAGAGCAGTCCCAACCAGAGCCAAAATTTTAGACTATTGTTATCA G,T [5713,5722] 5629 35 86.1 79 ...................-..CT....T..A.... TCCGCTGAAAATATAACGAAGCGTGAGCTAAACTGAGAGCAGTCCCAACTGATAGAATTTTCGGTTTGCTAAGAGCGGT G,T [5596,5605] 5513 35 86.1 80 ...................-..TT....T..A.... TCCGCTGAAAACACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGCAGTAGAGAATTAAACTCGCAAGAATTAG G,C [5480,5489] 5396 36 97.2 30 ..........................T......... AAACTAGTTAATAAATCCCCACACTACACT 5330 36 97.2 30 ..........................T......... TTAGTTAATTAAAATAGTTTTATTCTTTTC 5264 36 97.2 30 ..........................T......... CTCCTATACTTTGTGCAGCTATTGTTACAG 5198 36 94.4 30 .................G........T......... TTTCAACATCAATCTAAGGATAGGTATTTC 5132 36 94.4 30 .................G........T......... CGCAAACAAACGATTGATAGAAGATTGCAA 5066 36 97.2 30 .................G.................. GTTACTTTGGAGAAATTAGAGCTAGAGGTG 5000 35 83.3 81 A...................-.CT....T..A.... TCCGCTGAAAGCAACAACGAAGCAGTGAGCTAAACTGAGAGCAGTCTCAACAATGGCTCACGACTCGGCGATGGCTTTACT G,T [4967,4976] 4882 35 83.3 12 ...................-..TT....T..AT... TCCGCTGAAAAT G,C [4849,4858] Deletion [4836] 4833 36 66.7 29 AACAAC..AG.TG.GT.................... GCTACGGTTATCAGTATGTATCTGGAGCT AG [4818] 4765 35 77.8 13 ...........T....-.....T.T...T..A.G.A CTCTGCTGAAAAC Deletion [4718] 4717 36 66.7 30 AACAAC..AG..G.GT...C................ AACTCCTTAAGATATTTAAAAGCGTGGCTA AG [4702] 4649 36 100.0 30 .................................... ACGGTTGGGATGATACTGTCACCGCTGGAA 4583 36 100.0 82 .................................... GGTACAAAGATTATAAATCTTCATTGGTGGGTTGTGAATACCCTTCAAATGCTGTGCATTCACGAACTCTGCTGAAAACTAC 4465 36 55.6 0 AAC.AAGCCGTGAGCT...C................ | ========== ====== ====== ====== ==================================== ================================================================================== ================== 22 36 86.9 50 GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Left flank : CATTAAAATAGATGGCGACAACCCTAAAAATGGTATCGTCTTTAAAAACTTAGACAATCAAAATGAGGTAAAGCTCTCAGCAGAGCATATTGTGCTTAATGAGCCGTCAAGGTTACTCATTCTCGTTCCTACAGATTTAGAAGCAGGGAACTATGAACTCAGCATCACCACGCAAAGCAGTAAAGGCACTACCTTATTGAAAGAACCCCGCACCGAAACACTAAGCACACCTATTACTATTGTGTAGTGTGTTTTTGGTACTTCTAAATAAAGACCGCCCTTCCTTAGTACTAAGGAAGGGCGGTCGCTTTATAAGAGGAAGCTACTTCACTGCCTAAGGCGAAGGCTCTTCTCTCGGTAAGGAGAAGAGCCTTCCCTCGTACGAGGGAACCGACTTCGTCTGTACTAAGGAAGTGAGGTATTTTCTGTAATAGAATCAATAGAAAGCAAAAATCCCTGCTCTGTACCGTACAGAGCAGGGATTTTTTTTGCCCTCAGGT # Right flank : AGTTTACACCAGCAAAAGGGACAAAAAGATGTTGTGAATCCCCTTCAAATGCTTAAGCATTCACGAACTCCGTTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACTGACCACCAATATAGCTGTTCTAGCAAAACGTTGTTAATACCCTTCAAATGTGTGCATTCACGAACTCCACTGAAAACTACAACGAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACGCAATGAAGCCATATATTGATATTGCAGATGTTGTGAATACCCTTCAAAAAGAGAGCAATCCCAACTAGATGAAAGTGGTAATCTTAACTTTGTTCGTTGTGAATACCCTTCAAATGCTGTGCATTATCGTTATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGGTGTTTCAAAGAACGCTTTTCTTTACATCGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACATCTGATG # Questionable array : NO Score: 3.41 # Score Detail : 1:0, 2:3, 3:0, 4:-0.11, 5:0, 6:0.25, 7:-1.22, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Alternate repeat : AAACTGAGAGCAGTCCCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.00%AT] # Reference repeat match prediction: R [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //