Array 1 471832-469550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFBQ010000015.1 Streptococcus uberis strain GCPRG107 Contig_15_206.98, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 471831 36 100.0 30 .................................... CTGTGTAATCACCTTCTTGTTGCTTGATAT 471765 36 100.0 30 .................................... TAATTATCAACATGATTTATTGGTTAGTAA 471699 36 100.0 30 .................................... GTCTTCATCGTGTGACTTCCGCCAGTTGAA 471633 36 100.0 31 .................................... TCAACACTTAAGAGCTTGTCATCATTTAAGA 471566 36 100.0 30 .................................... CTTAACTATGGCCGTTAACAATGCCTTTAT 471500 36 100.0 30 .................................... TATTCGATTTCAAGTCTGGAGTGATGAAAT 471434 36 100.0 30 .................................... TGTTCTCTTGAGTCGTCAACCCAGTCCAGT 471368 36 100.0 30 .................................... GCAGATGTTGACTTAGTGTCAATTGTTGCT 471302 36 100.0 30 .................................... GGTATATAAGACACTGGAATTGAGCCAAGA 471236 36 100.0 30 .................................... ATGGCACAGTAAAAATTGATGGTAAGTATG 471170 36 100.0 30 .................................... TGGCTACCACAAAATAAAAATCGCTGATCC 471104 36 100.0 30 .................................... TTTTTCCTTGAACGGTTGGACTATAAATAT 471038 36 100.0 30 .................................... AAGTACGAAATGACCAAACCAAACAACAGT 470972 36 100.0 30 .................................... AATTCTTGTTTTAAATTTAATGTGTTGTCG 470906 36 100.0 30 .................................... TTGCTATCATCCACGAACATACCAGTATGA 470840 36 100.0 31 .................................... ACTCTGTTATCGTGGTAGTCTAAGTCTTTAG 470773 36 100.0 31 .................................... TTTACGCTTACCTTGTTTTAGCCAGCCACCG 470706 36 100.0 30 .................................... CTTAGCTCAAGCAGAGGAAAGACACAAAGC 470640 36 100.0 30 .................................... CGTTGACCTGACATACAATGACGCAACTTG 470574 36 100.0 30 .................................... CTTCTGCAGTTGCTAACTCCGCGTCGCAAC 470508 36 100.0 29 .................................... GAAACTGGTGCACAAGAGGAAGTTAAAGA 470443 36 100.0 30 .................................... CCTTTCTTTGTAAATCTAGTATATTACGTT 470377 36 100.0 30 .................................... TGGGACTGCGAATGTCGGCATTGCATCTAC 470311 36 97.2 30 A................................... TTTTCAACATCGACGTTTTCTTCTTTCAAT 470245 36 100.0 30 .................................... ACCCATTTTCTTACGTTAAATTCCTTCTCT 470179 36 100.0 30 .................................... TGTATATAAAAAAATCTATGTTGATGTAGA 470113 36 100.0 30 .................................... TCCTCCTTTATCGCTTGAACAATGCCTGAT 470047 36 100.0 30 .................................... TTGTACATGGGATATTCGAAGAAGCTGGAT 469981 36 100.0 30 .................................... TTATCTTCGCGAGAGAAGACGAACCTCCTT 469915 36 100.0 30 .................................... AATCCTGCGGTCGTCGGGTCGTTGATGACA 469849 36 100.0 30 .................................... TAGTTGAGTGCCATTGTACCAACGTTGTCC 469783 36 100.0 30 .................................... GTTGCTTTTTGGTTGCCTTTAACTGCTTGC 469717 36 100.0 30 .................................... AGTTGGTATAAAAGAGTTATGGCAAAATAA 469651 36 100.0 30 .................................... ACAACCTATGCAACAACCACAAGCACCACA 469585 36 94.4 0 ..................................TT | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTAGATGACTATCTAAGTCATAAACAATTTATTGAGATATGTCAGTTTTTAAACGATCTGTGTCAAAAATATTCTCATTTTTTCTGTATGGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCGACTAATGACTATCCAAACGAAGACCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGTTTGTCTGTAAGAGATATGGTAACTATCAAAATTTTAAACACGCTTTATCATTTTAATAATAAAGTAACTTTTGAAATTCCACATGTGAATTCGATGGAAATCAAATACCTAATTAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGGGAGTATAAAAATTTAATTTGAG # Right flank : AGTGTTCTTAAGTAGATTTGGCAACTGTTTATTTTTAAATAATTCCATATTACCTCAAAACAGCCACTTTCTAGCGTGACTGTTTTTTCTTACTTTTCTCATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTACTGTTTAAAATGTATAATTATTAATAAAATGGTCTTGAAAATGTATATCAAAAAATGCGTTTTCAGGGTTTTTCTTGTTTTTTTGATGTTTTAAACCCTATTAAAATAGGCTTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCATCAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //