Array 1 468328-468594 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038872.1 Pasteurella multocida strain FCf71 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 468328 28 100.0 32 ............................ TCTTTTAAAGACCTCTTGATTGTGGTGTGCTG 468388 28 100.0 32 ............................ AGCATCGGAAATGGGCAGAGTTGCAGATGTAT 468448 28 100.0 32 ............................ TTTCACTAGAACGCCTGAAAGCAATTTACCCA 468508 28 100.0 32 ............................ GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGT 468568 27 82.1 0 ............A.......-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 5 28 96.4 32 GTTAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAGTCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCACCTCGCACCAAAGCACCGAAAGAGGGAGAAATTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAACAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCTTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1687856-1686805 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038872.1 Pasteurella multocida strain FCf71 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1687855 28 100.0 32 ............................ ATCCGCAACGATGGGCTACCTTTAATTAAGAA 1687795 28 100.0 32 ............................ TTTCACATTGCCCGCTTTTTGAAACTCGGCGA 1687735 28 100.0 32 ............................ TTTCACATTGCCCGCTTTTTGAAACTCGGCGA 1687675 28 100.0 32 ............................ AAGCGGAAGGCTACCAACAAAACGGCACAGAA 1687615 28 100.0 32 ............................ ATTCATTTTTACTGCTGGAAACAAATAATTAT 1687555 28 100.0 32 ............................ TAATTTTGACCAAGATCAAGCTAAAGCTGATG 1687495 28 100.0 32 ............................ TGCAGTCAACCACTTTGATGTAATTAATACAA 1687435 28 100.0 32 ............................ CTGCAAAGTTTAAACTACTGATTAAACTCGTG 1687375 28 100.0 32 ............................ TAGAATCAAACGTGCTGCGGATTTTTCACACC 1687315 28 100.0 32 ............................ ATCAATGCGTGTGCGATTTCTTGTTGATGTAA 1687255 28 100.0 32 ............................ ATCAATGCGTGTGCGATTTCTTGTTGATGTAA 1687195 28 100.0 33 ............................ CCAAATCATCGCCCAAATATCAGGTGTTTTTTC 1687134 28 100.0 32 ............................ TTAAAGGCGCTTTACAAGTGGAAGAAGTAAAA 1687074 28 100.0 32 ............................ TCAGGAATATTATCTAAGTTATCAAACAATTG 1687014 28 100.0 32 ............................ AATCAACTGTTTAAAAGTTCCGCGCTACACAC 1686954 28 96.4 33 ............T............... ATCGCGGAGCGATTCTCGCAAAGAACCCGCGTA 1686893 28 100.0 33 ............................ AAAAAAGAGCTTGAGTTACTCAAAGCAAAACGT 1686832 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCAAAGTGAGTAAAACGCCGTTGCCTACCGAGCACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //