Array 1 952833-954080 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050833.1 Salmonella enterica strain GSJ/2017-Sal.-009 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 952833 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 952894 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 952955 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 953016 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 953077 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 953138 29 100.0 32 ............................. CGTTTATGAGATTGTGAGACAGCTTGATCCTG 953199 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 953260 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 953321 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 953382 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 953443 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 953504 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 953565 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 953626 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 953687 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 953748 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 953809 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 953870 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 953931 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 953992 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 954053 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 970251-971991 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050833.1 Salmonella enterica strain GSJ/2017-Sal.-009 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 970251 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 970312 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 970373 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 970434 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 970495 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 970556 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 970617 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 970678 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 970739 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 970800 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 970861 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 970922 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 970984 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 971046 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 971107 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 971168 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 971229 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 971290 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 971351 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 971412 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 971473 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 971534 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 971596 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 971657 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 971718 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 971779 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 971840 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 971901 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 971962 29 93.1 0 A..............A............. | A [971988] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //