Array 1 1446984-1447302 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014206.1 Pseudodesulfovibrio indicus strain J2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 1446984 30 100.0 42 .............................. CCAAAGAGGCGCGTTGTTCGTTACGCCGTGCGGAGTGAGATT 1447056 30 100.0 43 .............................. CCAAAGAGGGGGGGGCTCGCTATGGCGGTGCGGGGGCTGGGGT 1447129 30 100.0 43 .............................. CCAGAAGAGGTGTGTTGTTCGTTACGCGGTGCGGAGTGAGATT 1447202 30 100.0 41 .............................. TCATAGGAGGTGTGTTGTTCGCTTTGGCGATGCCGGGGTGG 1447273 30 86.7 0 ............T......C.......AT. | ========== ====== ====== ====== ============================== =========================================== ================== 5 30 97.3 42 CGCTGTTTGAGGCTGCGCCTCAAAGGCGCT # Left flank : CCAACTCCTTCACCAACCAGGCCCTGGCCCAGATCGACCTGGCCCTGAACGACTACGAGCCCAAGGTCATGATCCTGCCCAAGAAGCTCGACGAGGAAGTCGCCCGCCTGCACCTCGCCCGCCTCGGCGTGAAGCTCGAAAAGCTCACCAAGAAGCAGGCCGACTACATCGGTGTGGACCCCGAAGGACCCTACAAGCCCGACCATTACAGGTACTAGCCTAAAACGAGACCCGATAAAAAAAGGGGGGAGCCGAGCGGCTCCCCCCTTTTTTTATCGGGTCTCGTTTTAGGGGCGGCGGCTTCCGATAGCGGGCCATTCGCACATTTTTTCCGGGGGGCTTTCATCCTCACGTAGACGGCTACGCTGCGGTGAAAGCCCCCCGGAAGAAAATGCACGCCTGACCCACTCTCGAAAGCCTCACTGCTTACGGACGCGGAGGGGGGAGCCGCTTCGCTCCAAAGAGGGCCGCTGTTCTTTTCGCCGTGCGGGGGAGAGAGC # Right flank : TCCAAGGAGAGGGGAGGGTGGCTGCGGAGGGGGTGTTTTTATACAGGACGGGGGGTGGGGTGGTGTGATAGAGAACCGGGCATGCGCGGAGTCCGTCCTCATATCCTCCTGATTGTGGTCCTGGCCGTCCTGCTTTGGAGCGGGGCGGGGTGGGCCTTGGACGTGGACGTCAAGGTGTCCAGCTTCAAGATGGACCTGGGGCTGGAGTATGCGCCGGGGAACCTGATGGACGGGGACCCGGCCACGGCCTGGGCCGGGGGAGCATCTCCTCGGGCGAAGGGCAGTGGATGGAGTTCTCCTTCGGCATGCCCGTGCGGGTCACCCGGCTCGGCGTGTACAACGGGCACCAGGGCGAAGGGCAGTTCGATAAATTTCGGCGCATCCGGTCCGGCCGGGTGGTCTATCCCGACGGCACGGAGTTCCCGTTCTGGCTGCGCGACGAAAAGGGCGAACAGATCATCGAATGTCCGGGCAAGCCCTACAAGTCCCTGCGCATCGTG # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCTGTTTGAGGCTGCGCCTCAAAGGCGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.00,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 3504199-3502906 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014206.1 Pseudodesulfovibrio indicus strain J2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 3504198 32 96.9 34 ...............................A CAGATGGCGCGACGGCGGCCGGTATTGCGGGGCT 3504132 32 96.9 34 ...............................A ATCTTCGGCCATCCATGTCGTCTCCTCATCTGCC 3504066 32 96.9 33 ...............................A ACTTTCAGTCACAGGTAAACCACATTGCCAGTT 3504001 32 96.9 34 ...............................A ATTATCAGGCCGAAGGTTGAACTTGACGAGAGTG 3503935 32 96.9 36 ...............................A CTGCACGTCGAGGAAGGTTGCAACTCCGTAATCGAA 3503867 32 96.9 38 ...............................A CGCACTTTCCATGGCCGCCTTGATATTCTTGCGGCCAA 3503797 32 96.9 33 ...............................A TGCACGGCAATCCGCCGCGCGGCTGTCACAGCA 3503732 32 100.0 34 ................................ AGGCGCATTGCAGAGATTGTGGCGGACAACAACA 3503666 32 100.0 35 ................................ CATGCAAAACTGGATTTTATATGCGGACATCAAAT 3503599 32 100.0 35 ................................ CAGCCCTGCGCGTCACAGAGCGCGGCCCACTCGAC 3503532 32 100.0 34 ................................ CGGTTGGGCGGTTTGGGCTGCTGGTTGACTACCC 3503466 32 100.0 34 ................................ ACTTATTCTGCTTGATGCGCTGGAGGATTTACAC 3503400 32 100.0 35 ................................ TCGTCTTTTCCCCGGGCGCGGCGGGCGTGCCGGAG 3503333 32 100.0 34 ................................ TTGAGCTCACCTTTCATGAGTCTGGCCAGGATGT 3503267 32 100.0 35 ................................ CGCTACGTCATTACCAACCTGGGCGACCCGGTGGT 3503200 32 100.0 34 ................................ CTCCGCTGCTTGGCCCGCATCTTCCGGGCCGCTT 3503134 32 100.0 33 ................................ ATCGGTCTTGCCCGCCTCGACGAACTCTTCGCT 3503069 32 100.0 33 ................................ TGTGCAGTTGCTCATAATTGCCTCATGCTTTTG 3503004 32 100.0 35 ................................ CCCTGACCGACCAGCAGAAGCGCAAGGTTTTCGGC 3502937 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 20 32 98.9 34 GTCGCCCCCCACCCGGGGGCGTGGATTGAAAC # Left flank : GGATATCCGCCGTTTTTTTGGAAGTGACCCATGCTGGTGCTAGTGAGTTATGACGTGAGCTTCGAGGATGAAGGCGGCAAGCGGCGGCTGCGCCGCATTGCCAAGGTCTGCCAGGACTTCGGCCAGAGGGTGCAGTATTCGGTATTCGAGTGCGTGGTTGATCCGGCGCAGTGGACGCGTTTACGTCACCGGCTGCTGGAAGAGTATGACGAGGAGCGTGACAGCTTGCGTTTTTATTTTCTCGGCAAGAACTGGCAGCGCCGGGTTGAGCAGCACGGTAGCGGAAGCAGCTATGACCCGGAAACAGACACGTTGATATTGTAGCGCGAACCCCAAGCGGTTGGAAAAATCCAGGGAGGTTCGCAACCCTTGGGGTGTCAAGGATAACAGCCCGTTGCGCTACCGCTGATGAGTAAGCGAGCCTTCGGGGCCTTAAGCGGACATGGTTTCGCGGACAAACGGCTGAGGAAGCCCGCGCCGCAAGGCTTTGCTGCCGCACT # Right flank : CCGGCCATGGCGCAGATCGCGGAAAGTCAGGCCCTCAATCTGGGCGGCGGCGAGCGTCCTTCTCATTGCAATGGTGATGGCGTTTGGAGTCATGCCGAACACCGAGCCGGTAATATTTCGAGGGATGCTCGTCAGCACGGCCAGGGCGTCGGGTGATAGTGGGACTGTTCGCTCGGACTTATTTTTGGTGCTTTCGAGGTAGAGCGTCTTCGTCTTCAGGTCGACGTTTCCTCATCGCAAGCCTGCGATTTCCTCACGGCGCATCGCCGTTGCCAGAGCGAACTGAACAAGAGCTCGGAACTTGTCGCCACAGGCGGCCAAGAGCCGTTCCTCTTCGCTCTTGGCGTCCTCGACACCCTCAGGAGCGGGGTAAATGTCGCCGGGTCCGTCCGCCGGTCAGTTTGGGCTTGTTGCTCGCCCTTTTCACGGGGTTTGCGAGGCTTTCCGTACTCCAATCTGAGGCGACGACTTCGAAGAGCCGTGAGAGGATAGCAAGGTCA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCACCCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //