Array 1 12020-13454 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCHI010000045.1 Caldibacillus thermoamylovorans strain DFI.2.26 LIFIDDGP_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 12020 30 100.0 37 .............................. AAATGTGGACTTTCACGTCCCACATTATGGCGTGGTC 12087 30 100.0 37 .............................. TATGGAAACTCCTCACAGAATCCCAAGGCCGATTGTT 12154 30 100.0 37 .............................. TCACAACGATAACAATAATGATAATAGAAATTGTTTT 12221 30 100.0 36 .............................. ATAGAAGCCCAACATGGAGTAACTGGTTTCGCGGTT 12287 30 100.0 36 .............................. TACCATTTTATTCCGGAAGCACCGTCCGTAACTTCA 12353 30 100.0 38 .............................. ATGCGTGAGATTAAGTTTCAGGTATTTACAGAAGATTG 12421 30 100.0 37 .............................. AAAGTAGCGCCAAACATAAATTTTTTTAAAGATTATT 12488 30 100.0 39 .............................. TGCCCTATCCGAAGCCGATAAAGCCCGTATTGCGGCAAT 12557 30 100.0 37 .............................. AAACAGAACTTCCCGATATTGCTGAGAAGTACAGCAA 12624 30 100.0 36 .............................. GCGATATTCACTTCCACAATGTTTTTGTTTTGTTTT 12690 30 100.0 37 .............................. GACATTACAGAACTATCCGTAGATGATGTTTCCGAGT 12757 30 100.0 37 .............................. TACGTGTGGGTTGCATTATTAACACTATCCACTCTAA 12824 30 100.0 36 .............................. CCGTATGTCAGCTAAAACATCTTTTTCATCCTCAAA 12890 30 100.0 37 .............................. CTGATGGAACAGGGGACGGGAAAAACTCTGGCTGCAA 12957 30 93.3 39 .....C.......................T CGTTTCCGGGTTGCGGTTGAAGGGAATAAAATCGTCCGC 13026 30 90.0 35 ...C.C.......................T TATCTATCCATGTAGCCCCATCAGTAGTTGCAACC 13091 30 90.0 37 ...C.C.......................T TCATATATATCAAATCAATTAACCAGTTAGCAATTTT 13158 30 93.3 36 ...C.C........................ GACAGCGGAGAGTACACCAGACACTTTGACGCTGAG 13224 30 100.0 37 .............................. TTGACGAGAAATGTCTCGGCGAATACTCGGCGACTCT 13291 30 96.7 36 .....C........................ TGTCGCGGATGTCGGCTGCCATTTTCGACGATTCAG 13357 30 96.7 39 .....C........................ GAGAATCCCAAGAGTGTTTAAAAAGTCTGATGGTGCCTG 13426 29 83.3 0 .....C...-.C.....A..A......... | ========== ====== ====== ====== ============================== ======================================= ================== 22 30 97.4 37 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : AAAATCAAAAAACAAATGGTAGTCATGGTGAAGTGGAAGATGAAGATAGAGGAATAGTAGACGATTTACGAAATTATTCGGATTTGTTAAAAATTTTGCATACCATAAAAGACAACCGAAATGATATAAATCATGCGGGTTGGAGAAATAACCCACTTTCCTCGAAAGTACTGGAAGAACATTTTATAAGCATGTTTGAAACATATAAAACGCAATTGCTAAATTACTATGGTAAAAGATGAAATGCCATGTAGGTCGGTTTTGCTTTTTGGTTGAACTTTATTCTTTTTATGATTAGGCTGGCTGAAAATATTGTCGTCGACCTCAAGTAGTGCACAAATCCCGGGAGGTCGACGACAATTCGGTTTTTAAAATCATAAATAAAAATGCTGAATTGACGTGCATTATGAAAATATAATTGCTAAAAACCAATATTTCTATTATAATTAATGCAAAAGTAACAATACATAGAAACCTTATTAAATCAAGGACCTTTTGGG # Right flank : CTTGGGTGGAGTGATTAAGGGAATTTAAAGGAAGTAATAGAAAGCTAGAAAATTAATCAAAAAAGTAATGTTTATATAATTGGAAACTTATTAATATTTTTTCTTTTTTATCGAAAAAGACCTGCCTTGGCTTTAGATATAATATGAAAGATAAGGAAAATAAAATCCTGATTTACGATGACTCCTGTACAGAACGAACAATAGCCATTATTGAAAAATCTTATTATCGTGATTTAAAAATTGCTGAAATAGCTGAAGTATTATTATAAACAGATTCTATCTTTCGCAAATTTTCACAGGAAAATCGGGTTATACATAAAAAATATATAATTGATTTTCGAATTTCACGTTTCGGAGAGGTATTATTTTTTTAAATTGGCCTATAGAGAAGGTTGGTAAATCAGTTGGGTTTAAAAGGTTCGCCTTTCACAAAGTTTTAAAAAAGATTATAGTATCACTCCAAGTGAAAAAAATTATGGTTAAATGAATGGGGGTCTGCT # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1080-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCHI010000059.1 Caldibacillus thermoamylovorans strain DFI.2.26 LIFIDDGP_59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1079 36 100.0 35 .................................... CATTCGAGAAAGGAGTCTGGTTCTCCATTGCCATA 1008 36 100.0 35 .................................... TCCCAGTTGCTGTTGATTGGGATTGAGCGGTAGCC 937 36 100.0 38 .................................... ATTAAAAATGAATGGAATGGTTATTGCTGCAGATATTC 863 36 100.0 37 .................................... ATTCAAAATTCGAGCAAGACTTTTCAAAATCTTGCTC 790 36 100.0 37 .................................... GAAAATTTTGCGGGGCTATATAAGACTCAACAACTTC 717 36 100.0 34 .................................... AAAAAGAAAGTGGATACACCTATAGAGACGATCT 647 36 100.0 37 .................................... AACACATCTTCGGTTGGATCCTGTGTGGTTGTCGTTG 574 36 100.0 39 .................................... ATGATATTTCTCCATCCTTAGTTTTGTGTATGCAATACT 499 36 100.0 36 .................................... GGTCTGAAATTCTAGGTGGTGATGATAATTGTGGCA 427 36 100.0 38 .................................... ATGAGATTTCCGACTTAACTAGGAAACTTGAATTTACT 353 36 100.0 37 .................................... AATAAAAATTGGGAGGAAAGTAGTATGGGGCGTTTTA 280 36 100.0 40 .................................... GATTTTCTGCAAATCGAATCATGACTTCTGCTTTATGTCG 204 36 100.0 39 .................................... AAAATATGATGATAGTTTTGTTGGAGAAATTCATCTTTC 129 36 100.0 38 .................................... CGCCAAGAAAATGGTGTGTTTGTCGAGCATGGTCGTGC 55 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 100.0 37 GTCCAAGAAAAAAGAAATGATATGAGGCATTAGCAC # Left flank : CCATCATAAGAATGACCAAGTAATGTTTGTTCACATCGGGCCAGTGAAAGATGGTCAACTATCTAAAAAAATCTCAACAATTGGGAAAGAATTTGTTCCATTGGATTTAAAGCGGCTTATATTTTGAAAAGATATAGCAAAGAAATCTTATGAAAAAAATACAAAAATATATTGTTAAAAAATAGGGAATATTATATAATGGACTTACGAGGTTCTGTCTTTTGGTCAGGACAACCGTCTAGCTATAAGTGCTGCAGGGGTGTGAGAAACTCCTATTGCTGGACGATGTCTCTTTTATTTCTTTTTTCTTGGATCTGAGTACGAGCACCCACATTGGACATTTCGCATGGTGGGTGCTCGTACTATAGGTAAAACAAACCTTTTTAAGAAGAATACAAAAATAACCACAATATTTTTTAAAAGGAATTTTGATGGATTTACATAACCTCTCGCAACATGCTTCTAAAACCCAAGCCCACCATAGCCCAAAACCCCCTGCG # Right flank : CCTCAAGTTTGTCCAAAATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAAGAAAAAAGAAATGATATGAGGCATTAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 70418-69840 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCHI010000009.1 Caldibacillus thermoamylovorans strain DFI.2.26 LIFIDDGP_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 70417 36 100.0 31 .................................... TTTTAATGAGCGTAATGCACTAATTCCATTA 70350 36 100.0 30 .................................... GTATTCGGCGGATTTTGTGCGATAATCTGA 70284 36 100.0 30 .................................... TTCTGTGGAAGTCTAATTCTTGTTCGTAAA 70218 36 100.0 30 .................................... TATAGAACACCATGTTGGATACATAAGGCG 70152 36 100.0 30 .................................... TTATACAATTGAACATTCACCAATCATACC 70086 36 100.0 30 .................................... ATGAAAAGTTGTTAGAGGCGGCCAAAGACC 70020 36 100.0 30 .................................... GCGCGGATGGTGATATAATAGTCGTACAGC 69954 36 97.2 40 ..............T..................... GTGAATAGGTAATTTTTCGAGATTTCAATCCACGCACCCA 69878 35 86.1 0 ...........-....T.........T..T.....T | TTG,G [69848,69860] ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 98.1 32 GTTTTGGCACTCTTCCAGTTTTGGGTATAGTAAAAC # Left flank : TTTGATCATTGACAAGTCATTTGAAAGAAAACGGTTAATAATAATTGAGTTTCCTGAATTATACACCAGTAAAAGAGAAATGGATTTATTTTGTGATATAATTAACAGATTAGTAAAAAAGGGCGTACATTTTTTAATAGTTACGAACCATTCATTATCTGGAAATCTAAATTATATATACAAGGGAAAAATTATTAATAATGCTGAGTTGGAAAAAATAAAAAGAAAAGTAATTAATGAGATACCATACTTTTTTGATGATTCAATGTATATGGTTGCAAAAAAACATTTGTTAAGACTTGTGGATAACATAGAAGATGACGAACGTGAAATCAAGTTATCCACAGACCTTGAGAGTAGTATATCAATTGCAATTTATATTATGCTAAAGCATTTAGGTATTGATTCTACAGTTGATACATCATCAATACCAAAAAATTTGTCCGCATTTATTAATTCATATACTCCAATGAAGTGAGATATTGTATAATAAAAATGAG # Right flank : ATCCCCACATTTGAACATAAGTGGGGATTAAGTATTATTTACTTTTAAATAACTTTTATGTTTTTATCATCTTTATTGCTATCTGTGTTAATTTACTTTTCCTACAACCTCTTGTTTTTCATCTGCCGCATATACAGTCACTTCTTTTTCAATCCCCTGTTTATTTACATACCAATTCGCCGCTCCGACAAACAATCCGCCTCCAACAATATTCCCAAGTGAAACAATGAGCAAATTAAAAGCTGCTCCTGTCAAGGTAATAGTATCCGGGTGAGGGACTGATAAAGAAATAGAAAATAACGCCATGTTGGCAATACTATGCTCATAACCGGAAACAAAGAAAGAAGTGACCGTCATCATGATCAACATAACCTTTGCTGCAAAATTGTCGGTTTGCAACGGGAGCCAAATGGCCAGACAAACAAGCCAGTTACATAGAATACCGCGAAAAAACATTTCCCCTGTCGTTAATCCAATCTTGCCTGTCACCGCACTAAATA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGGCACTCTTCCAGTTTTGGGTATAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.30,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 1196-1033 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCHI010000099.1 Caldibacillus thermoamylovorans strain DFI.2.26 LIFIDDGP_99, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1195 30 93.3 37 A.A........................... TTGCATGTGGAATACAATGATCCGTTTTTCCGAATTG 1128 30 100.0 36 .............................. AATATATTCCCGCGGGTACTTCATTTAATGGGATTT 1062 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 97.8 37 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : ACAATTGATCATCGGCGAAGTGAAAAATCTACCCACTTTAAAAAGACTGCCCATTATCAATTTTTTATTTGGACACGCTAACAGAGATGGGGATCGAAGCGATAGGTGAGTGAATGCCATTTTCTAAGAACGTCGACGCAGAGCAGTTGAATGGACGCCCGAAGAGGAAGAGAAACTGGATGAAACGAACCAAGAGATTCAATTTCTCATTTTAAACAGCGAAAAAGCATATAAATTAAGTTCAACGTTGGAAGAAAAGGAGAAAAATACATTGTGGAGATAGGATAATAATTTTTCTCTGACTTTTTGTCGTCGACCCTTAGTCGTAAATGAACCTAAGGGAATTGACGACAGTTACTTTGTAAAATAATAATTGGAAAAATGTTTAAGCTATCTGGGGTTGGAAAGTTCCAATAGGCTAAGAATAAATTCTCCATTATTGTTAACGCAAAAGCAACAATACTTAGAAACCTTATTATATCAAGGATCTTTTGGGGTTT # Right flank : TGTCAACGGTGTAGATGGAGTAGCTGATTTCAGAAAACAAGTCAGTGTTGGATAGGTATAGCCATTATTATGTAACTTTTATTATCTCGCTTTTGTTTTCATTCAACCATTAAAAAAGAGTGACATTAATAACAGTAAATCATTGTTAGAGGACAAATTGATCTAGTAGGTTTTTGTATTTTTCACAGAAAATATGCGGTTTCTATGAAATGAAAAAATATCGTAAACAAGAAGGAATTTTTCCGCTTTTTGTCGAATTAAAGAATAGAATAACAGTTTTAATCTAAAAATGATAACGTTCCCATCTTTAACAGAATAGAAACTTGTTTTTGCTGCTGCAGATATAAGACTATCCCTTCAAGATTTGAATCAACGAAAGGAAAAGATGGGATGTGTGCTTCCTACACACGTTCAATTGGTTCGGATGGGCATTGTTTGTCGCAAAAGTGTTGCCAGATGAATCTAGCTTTTAGAAAAGTGTTCTTTCTATGTTAGTGGGA # Questionable array : NO Score: 8.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.73%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 6516-6198 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCHI010000133.1 Caldibacillus thermoamylovorans strain DFI.2.26 LIFIDDGP_133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 6515 36 97.2 38 ......................T............. AAACCCGCAAAAAATAAGCTGTTGACGAGTCTAGTTAG 6441 36 100.0 39 .................................... TTGTCAATCCTCGAAAATGCCGGGCGGACGGGCTTGCCA 6366 36 97.2 35 ....................A............... CCACCACCGACGGCGTCCACGCCAATTGCCTGCTT 6295 36 100.0 26 .................................... AACAATATAAACGACTACTTTACCGT 6233 36 94.4 0 ..T...................T............. | ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 97.8 35 GTCCAAGAAAAAAGAAATGATACGAGGCATTAGCAC # Left flank : CGCAAAAAATAAGCTGTTGACGAGTCTAGTTA # Right flank : GATGGGATGGGAGAGAGAGGACAGTTCTACTCTTGCTGTATCCAGCTTCTTTTACTTTATCCGGTATCATTTCTTCACTTCTTTCTGCACATAAAAAAGCACCTAACTATTTGGATAAGTTAAGTGCTTTTATTTCCGTTTGAAGTTGTCTATTGCTTTTTTCTTCATATCTTCAAATTTTTTCTGTTTCTCAGAGTCAACTTTACCAACTGTAATCCCTTTTCTTTTTGGCATTGGGGTATCTTTCCACCTTAGTGTGTTCATAAGGCTTATATTTATCACTCATTGTATTCCTCCAACACAATTATAATTTTTCCGTCATCCTCAATCCAACCGTCAACTGTGACAAAAGACGAATCTCTCTTATATAATACTTCTACTTCATTGTCATTAAATCCTTTCAAATCTACTCCGTTTTTTGTATTTATCATTCACGCTAAAAAAAGAAGGTGCATTGTCTAGTCCTTTCATCGTAGACAAGTACCCTCTTTCATAGGCTT # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.06, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAAGAAAAAAGAAATGATACGAGGCATTAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 2310-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCHI010000159.1 Caldibacillus thermoamylovorans strain DFI.2.26 LIFIDDGP_159, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2309 36 100.0 37 .................................... CGGGAGCAGTTGGATTTAAAGACGTTCGTGGCTCTCT 2236 36 100.0 40 .................................... CTAAGCGGATATGTTCAAGTGGAGGTAATATGTCGGTAAC 2160 36 100.0 34 .................................... TAGATGTTGAAAACGGCGGTTTTGTCTATTATCC 2090 36 100.0 37 .................................... TGTCCAAATCCGCATTGGTTCCTAATGCTTCTTTCCC 2017 36 100.0 34 .................................... TCGACAATCACGCCAATTTCTCCGCGATAGTTTG 1947 36 100.0 40 .................................... TTTGTAATTTGGAACCTTCACATCCAGTGTAATCACCAAC 1871 36 100.0 36 .................................... GAATCGGCGGCGGAATGTTTCTCGGCGCGTTCCGTC 1799 36 100.0 37 .................................... ATTCCGAAGCTGCTATCGCTTGGCTGGGATTTAGTTA 1726 36 100.0 36 .................................... CGGACGAGCAACGATTTGACGAGTTTTTGCGAATAT 1654 36 100.0 35 .................................... CAAAATTCGACATGGAGGTTAAATTTTCCTACGAG 1583 36 100.0 37 .................................... GCCAATACTTTCGTTTGTGTGTTGTCACGACTAAACA 1510 36 100.0 35 .................................... AACACTATCACCTCCCTAAAGGGAAAATATGTTCG 1439 36 100.0 39 .................................... GTAACACAGGGTACATTAAGGAATTCAACCCCGTAAACC 1364 36 100.0 36 .................................... TTCTGGACGACCGTTAAATACTTCTATCCATATTTC 1292 36 100.0 37 .................................... AAAAAATATAAAAGTTATCAGTGCCGAATAGGCGTAG 1219 36 100.0 38 .................................... TTATAATTATCAATTGGTACCAAGCAATCTCATAATTG 1145 36 100.0 37 .................................... TGGACGCAACACAAGTGTACAGCGGCATGTACGGCCG 1072 36 100.0 35 .................................... TTATACCGTAAAAAATTTTGGATTTGATGTCACCG 1001 36 100.0 36 .................................... TGGTAATCCTACCTCATTCCAAAACTTTTGTAGTTG 929 36 100.0 37 .................................... TAAAACGAAGATTTACCGAGCGATTATTTCGTTCCCC 856 36 100.0 39 .................................... TTGATGAACCACGTGAAGAACTTGGAACAGCAAAAGGTG 781 36 100.0 35 .................................... ATCAAAACGACGTTCATTCTCCGCTTGCATGAGAA 710 36 100.0 36 .................................... TCAATAAGCGATTGTATATATTCCATGAATCCTGTG 638 36 100.0 38 .................................... ATGTACGACATGCACGAATTGGGCGTGTGGGTATCGTA 564 36 97.2 36 ......................C............. TGCTAAACGACAACTTACGTTTTATTTCGTCAGGCA 492 36 97.2 38 ......................C............. ACCCGAACCCCTGAACCTATATGGTATTCGTTTGCATG 418 36 94.4 36 ......................C..A.......... ACGTTCGTAGTATAGATATTTACCCCCTGTTTTGGC 346 36 97.2 37 ......................C............. TTGTTGCATAATTACACCATACTCCTTTCTGTGATGA 273 36 97.2 35 ......................C............. TCCACCTCCATTATCTTGGCCAAACGAGTCAATCA 202 36 97.2 37 ......................C............. TTTAAAATGCGATAGTGATAAAAAATTGTCGAATCTG 129 36 100.0 38 .................................... CTTTAATAACTCGTTTGTGACCACCTAGATCACCCCTC 55 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 32 36 99.4 37 GTCCAAGAAAAAAGAAATGATATGAGGCATTAGCAC # Left flank : GCGGTTTTGTCTATTATC # Right flank : CAAACCCGCAAAAAATAAGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAAGAAAAAAGAAATGATATGAGGCATTAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 19-1276 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCHI010000182.1 Caldibacillus thermoamylovorans strain DFI.2.26 LIFIDDGP_182, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 19 36 100.0 35 .................................... GAAATCCGGCAATCGAATTATGTTTAATGTACATT 90 36 100.0 36 .................................... AAACCTCGACCACCATTGTTTGATTCAATCCAAGCT 162 36 100.0 34 .................................... GCAATCGCTGTTTCGGCATCTAATAGCTCGTAAA 232 36 100.0 36 .................................... CCCGTCCGTACCTTTAACACCTTGCGGACCTTGTAT 304 36 100.0 35 .................................... AGAGTATGAATATTAGCTTTAAGTTTAAGCCATCC 375 36 100.0 36 .................................... ATCAAGTTGGATTGAAAAATAGTGTAGCTGTTGAAA 447 36 100.0 36 .................................... TTCCTGCTAGTTTACCGGCAGTATCAGCTTCATCAG 519 36 100.0 36 .................................... ATCACTCAACTGGTGAATATGCATTATCCTTTTTTC 591 36 100.0 38 .................................... CGATACTAACAATATAACTAAAGGGGCGATCATTTGAT 665 36 100.0 36 .................................... CGAACAACGGTTAATAAATTATTTGAACGGTATTCT 737 36 100.0 36 .................................... TATGAAAGAAAACTCAGCAACCGCTTGGTTGACATG 809 36 100.0 37 .................................... AAAACAAACGATTATTGATAAGTTAACCGTTTGATAT 882 36 100.0 37 .................................... GTTATTACTTCCCAATACTAAAACGGTACAACTTTTT 955 36 100.0 35 .................................... TTCAAGTGGTTTCGGTCCTAAGCGGAGTTGACGAG 1026 36 100.0 36 .................................... TTTTCACCTCTCTATAGAGTCGAACTATACGGTATC 1098 36 100.0 36 .................................... TTAAACAAATAGACGGAAATTTATCGGCAAAATATG 1170 36 100.0 35 .................................... TTTGATGTTTTCACTACATTTTGGACAAACTTGAG 1241 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 18 36 100.0 36 GTGCTAATGCCTCATATCATTTCTTTTTTCTTGGAC # Left flank : CGCCGTTTTCAACATCTAG # Right flank : TTTGATGTTTTCACTACA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTAATGCCTCATATCATTTCTTTTTTCTTGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [16.7-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //