Array 1 10794-11122 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFR010000185.1 Frankia symbiont of Coriaria ruscifolia isolate Cv1_Ct_nod1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 10794 36 100.0 36 .................................... CTAAGCCCGGACCTCAGTGAGCGGCTGGCTGCTGGT 10866 36 100.0 34 .................................... TGTGCCGGCCCATTGGGCGGCGATCAGTTGAGGT 10936 36 100.0 46 .................................... CGAAGGCCTGCACGAAGGTTTCGGCGCCGGCGAGTGTCAAGGGCGA 11018 36 97.2 33 ........G........................... CCCTGGACCTGGGTCGGAACGTTGCCCTGGTGT 11087 36 77.8 0 ......G.G....G.T......A...C.....GG.. | ========== ====== ====== ====== ==================================== ============================================== ================== 5 36 95.0 38 GTCGCACGACAGGAACTTTCCGCATCGGATTGAAAC # Left flank : TGTGCGGCGGAGGTAACGCGCCCGAAGACGCCGGCTTGACGTACACGACGACGCGAGCGGGCACAGGTCACCTTCTTTTCTCTTGCGGCATTACTCCCGCGACAGGTCCAAGGTGCGATCCGGATCTCACGGTAGGCCGGTGGACCAGGCGCGCCGCGCCGGGGTCAGGCACGCTCCGGCGTCAGTCAATGGTCTACCTCCGCACGTCACCGACGCGACCAGCTGTCTCTGACGGACGATGGAGGGGTGAGGGTCACGGGCATGCATCCGCAGGGTGATGCACAGATACATCTACCTGTCAAACGATCCGACCTTGATCGTTGCCCACAACCTCCGACACGCCGACAGAGCGAGGAGGTTGTGGGAAAGATCCATAATCCTGTGAGCTGCAAAAACATAAACGATCAAGATTTTTGGGCCGGTTGTCCACAGCCCCCTCCGGGAGGTTGTGGGACGATCTTGCAAACCCGCAGGTCAGACACCCCAGGATCAGTGGTACT # Right flank : CGCGGAAGTCGTAGGTGGTTCCCGTCGCGATCACAACGGTTTCTACCTACAGCTTCCGCGTCCGTAGGTGGAAACGGTCGCTATAATGACGGTTTCCACCTACGGCTGCCGTAGTACCTTCAGATCGAAGCCGGGGAATGCCTACTGCGCCTACCGGTGATCGATGAAAATGCCAGCGGGTGTGTCGGAGGGCTGCCAGGCGCCGTCGTCGGGGAGCCAGCGCATGTCCGGCGCGCACCGCTGGCAGGGCTGGTAGGCGGCGACCCGATCGCCGGGAAGCGTGAGTCCGCTCAGCCCGGCGGTCACCCGGGCCGCGGTGAACCCCGCGACGGACGGGACGTACCAGCCACTCTGCTGGAAACGGTCCGCGAACGGACGCAGCGCCGCACGGACGAGTTCGCGGCGGCGTTCGTCAGCGATGTCGTAGACGACGATGACCGGCCCTTTCACGATGTCACGACCCAGCCGCCCACGGGCGGGGCGTCCATCGGCATGCCTGC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACGACAGGAACTTTCCGCATCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 2 17266-17655 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFR010000185.1 Frankia symbiont of Coriaria ruscifolia isolate Cv1_Ct_nod1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 17266 36 100.0 34 .................................... CCATGCGAGCGTGGGACCGGGCAGAGACGATGCC 17336 36 100.0 37 .................................... CTGGTCTCAGCGTCGGCGTTGAGCATCGCGGCGAACA 17409 36 100.0 35 .................................... TCCGGAACTTCCTTCCTGCCCGGGACGAACCCGAC 17480 36 100.0 34 .................................... TCCGATTCCGGCTGTGGCTGCGGGGAACCGCGCA 17550 36 100.0 34 .................................... GCGAGCTCGCCGGTCCCGGGCACCGGGAACCCAG 17620 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 6 36 100.0 35 GTCGCACAGCAGGAACTTTCCGAGTCGGATTGAAAC # Left flank : TCGGCTGGGCCGCTGGTGGGCGTGGCCCGACTCGTCGAGCTGGAACCGGAACCGCCGGGGCCGGAGGGGGTTGAGCCGGCGCACGCCGAACCGGCATCTCGGGCGGTTGAACCGGCGCCGGTTGGCCGGGCAGATCGACGGGGACGGCGACTCCGTGTTCGTCGATGCGCAGTCGCGGTGGGTTCGTCATCGCCGCTCTCCCCGTCCGCAGTGTGCGTCTACCCGCATCCGACGGATGATGGGGACATGACGGCCGGATCCCGCTGGCAGCGGCGTAATGCACAGATGTTCATGACGGTCAAACGATCCGACCTTGATCGTTGCCCACAACCTCCGACACGCCGACAGAACGGGGAGGTTGTGGGAAAGATCCATAACCCTGTGAGCTGCGAAAACATAAACGATCAAGATTTTTGGGCCGGTTGTCCACAGCCCCCTCCGGGAGGTTGTGGGACGATCTTGCAAACCCGCAGGTCAGACACCCCAGGATCAGTGGTACT # Right flank : CTGGGGATGACCCCAGGGCTGCGCGAAGGTCGCCCGGCGTGGCGATCGGCTACTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACAGCAGGAACTTTCCGAGTCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : NA // Array 1 23-2956 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFR010000052.1 Frankia symbiont of Coriaria ruscifolia isolate Cv1_Ct_nod1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 23 30 100.0 36 .............................. GCGAAGAGTTTCCTGATGAGAAAATTCAGGAGCTTT 89 30 100.0 36 .............................. AGCTTCTGGTTGTAATCCGCCAACAGATCACGGAAA 155 30 100.0 37 .............................. ATGCTTGTCCCACCGTTTACGAGCGATGTCCCCGCTG 222 30 100.0 35 .............................. ATGGGCAGTGTTTCCCGGGCCTGTGCTTCGCTGCC 287 30 100.0 35 .............................. CTGAACCCATCTAGTACGATCTCCCACAACTTCTC 352 30 100.0 38 .............................. ATCAGCGGCACGATCACCGGCATCAAGCCGGTGACGTC 420 30 96.7 36 ..........................G... CCTGTTGCACGAGGCGTGGGTGATGCGGCGTGGCCC 486 30 100.0 35 .............................. CGGGTCACCTGCGCCCGTGCGAGGTCCAGGAAGTA 551 30 100.0 34 .............................. TACCGCGGCGGCCAGGCCGTGCCCACGCGTTGGA 615 30 100.0 35 .............................. CCGTGCGTAGGCTGGGGCTGCGCCGCTCCAGGCCC 680 30 100.0 36 .............................. GTGGTCCGGGTGCTGATGCTGCTGAACAGCGCCCAC 746 30 100.0 36 .............................. CTGGCCCTGGTGCCTCGCTCCGCGCCGGTCTCGGCG 812 30 100.0 36 .............................. ACGCGCCAGTGGTCATGGTCGTGGTGTCGCTCATGA 878 30 100.0 35 .............................. CCGGCAGGCTGGACAGTGGATATCTCCGCTCACGC 943 30 100.0 38 .............................. AGAGAACGGCCTCGACGTCGCCGTCGAGGAGATCGCCT 1011 30 100.0 38 .............................. ATGACCTCAGCAGCGATCGCGTCGTGCTCTGTACCGGG 1079 30 100.0 37 .............................. AAGGTCTTCGCCGAGCTGGGCATGTGGACCGGCGCCG 1146 30 100.0 35 .............................. AATACGGCCAGGTCGCGTGCTGGGCGATAGAACCC 1211 30 96.7 35 .............T................ GCCATCGCCCCGGCCGCCATGGGCGGCCGGAACAC 1276 30 100.0 37 .............................. CAGCCTGCGCCGCAAGAGCCGCCACGGCGGAATAGAT 1343 30 96.7 38 ............T................. GACACCGGGCGGGCGGACCGTCCTGCCCGAGGTGACGG 1411 30 100.0 35 .............................. GACACCCGCCGCGCCCATGGCCGCGCCGAGTCCAG 1476 30 100.0 36 .............................. AGGACCGCGTAGCCCGGTGTCATCGACGAGGGCTTG 1542 30 100.0 35 .............................. AACTCGGCAAGAAGCGACCGTCCGTCCGCGTCCTG 1607 30 100.0 37 .............................. GGCTCCGGTGGCCAGATGAGGGACCAAACTAGGGCCT 1674 30 100.0 36 .............................. CCCCAGATGCCGTCACCACGGATGCCGATCACGGCA 1740 30 100.0 38 .............................. ACCGCGCCCGGTAGCAGCCGCCCGGTCTGGGTGTAGCG 1808 30 100.0 38 .............................. AGTTCCCCGCGAGGTGCTTGTACGGCAGATACATCCGG 1876 30 100.0 34 .............................. GCGAGGCTCGCCACCGGCGGCACAGCCGGGTCTC 1940 30 100.0 36 .............................. GCAACCGGCCCGCGATGGACGGGCCGCTCGGCTGCT 2006 30 100.0 36 .............................. GCAACCGGCCCGCGATGGACGGGCCGCTCGGCTGCT 2072 30 100.0 35 .............................. CCGCGCTCCGGGAAGAGCGCGCCGGCCTGGTGGTG 2137 30 100.0 37 .............................. GCGTGACCGAAGGTCGGATGCTGGAACGGACCGTCGC 2204 30 100.0 38 .............................. CCCGTCCTGGTCCATCCGCCCGGTAGGAAGACGTTCGC 2272 30 100.0 36 .............................. TGGACGGCGGTCGCGTGGCTGACGGTGCCGTCCGGC 2338 30 100.0 34 .............................. ATGGAACAGGTACGGTCGGACATGTCACGCCCTT 2402 30 100.0 34 .............................. CCGAGCCCAGTCCCGGATCGTGGCCTGCGATCGA 2466 30 100.0 37 .............................. GCCAGCCCGCGGAACGTGTCCACTTCACGCTCCAGGG 2533 30 100.0 37 .............................. AGGGTGGCGCGGTCATCTGCCAGACCGGTGAGGCGCT 2600 30 100.0 34 .............................. ATGCCCTCCTCGGCCGCCCATGCGCGCCATGCGG 2664 30 100.0 37 .............................. TCCGGCAGTGGCAGGGTCCGGGCGTCGCCCCGGAGTA 2731 30 100.0 36 .............................. GAGTCACCCCGGGCGAGGTTGAGCTTGCGGAACGGA 2797 30 96.7 36 .............T................ ACAGCTACTCCTACCGCACCGTGCCGTCATGCGCGG 2863 30 100.0 34 .............................. CCCATCTTTGCCCTCCTTGGCATCGGTTGGCGTG 2927 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 45 30 99.7 36 GTCCGTGATCATCCCTGGAGGGATTGAAAC # Left flank : CTTGTACGTCGCCCCGCCGCCGG # Right flank : GTCTGCCGCAGTCCTGCGCTCATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTGATCATCCCTGGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [8.3-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 69302-71843 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFR010000053.1 Frankia symbiont of Coriaria ruscifolia isolate Cv1_Ct_nod1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 69302 30 100.0 35 .............................. AAGACGGGCGCCGCGCCGGCCGCCCGCTCCACGAG 69367 30 100.0 39 .............................. GCGGGCTCCTGGGCGTCCCGGCCGACCGCGTCGCGCTCA 69436 30 100.0 35 .............................. GGGAGCGCGCGCCAGCACGCCGGGCAGCAGGAGCG 69501 30 100.0 39 .............................. GGGTCGTCGCCCCGCGCTTGCGCGGTGAGCCCGGCGCCG 69570 30 100.0 35 .............................. AGATGGGCCCGGACGGTGCCGGCGCCAAGGCCCTT 69635 30 100.0 37 .............................. GTAAGCCTGTGTAAATGTGAAGAACGACTGTGCGCTC 69702 30 100.0 36 .............................. ATGAAGTCGCGACACTTGCACTACCACCAGGAGTCT 69768 30 100.0 37 .............................. GACGGCTGACCAGTGGCTTTCGCAACGTGATGGGCAA 69835 30 100.0 34 .............................. GCGAGCTTGTCGGCGTGGCCCGCCATCTTGGCGA 69899 30 100.0 35 .............................. GAGACCAGGGCACCGGCAAGACCAACCAACTGCAG 69964 30 100.0 41 .............................. ACACCCTGCGGGGCTGGTACCAGCGCCGGATTCCCGTCCCC 70035 30 100.0 37 .............................. ACACCCCCGCGCCCGTCGTCGCCCAGGCCCTCGGCTA 70102 30 100.0 37 .............................. AATGACAAGGCGGCGGTCCTGCCGTGCGCGCCCGCTC 70169 30 100.0 35 .............................. AGAGGACGACGATGGCGACGCCGAGGTGGGGATAA 70234 30 100.0 34 .............................. TGTCTCCAGCATCCGCGAGCCCTGCTGTGCTCAA 70298 30 100.0 35 .............................. AGGTCACCCCACAGGGCATCGCGAAGGGCGGGACG 70363 30 100.0 36 .............................. ATGGGGGCCTCTCCCACCCACCATCTTCTCGACATC 70429 30 100.0 36 .............................. GCGGCCCGCTCGCCGCCGGAGCGCCGGTCCCGGCCG 70495 30 100.0 37 .............................. GGCCGTCTGCGCGAGGCCGTGCCCACCACCTGACCCA 70562 30 100.0 38 .............................. AGGAGCGCTAGAACGCGGTCGCCATAAATCGCGTGCAC 70630 30 100.0 41 .............................. GCGTGCAGTTGCGCGAACGGCGTGGCGCGGTGGCGGTCCGC 70701 30 100.0 33 .............................. CTGAGCGCGGCATGGACGAGCAAGACATCGACG 70764 30 100.0 34 .............................. GCTGGTACCACGCTCAGCATCCGCGCGGGTGCGA 70828 30 100.0 35 .............................. ACATGCCCACCGACTACAGCCCGCTGACCATCAAT 70893 30 100.0 35 .............................. GCGGCGAGGCGAGCCTCTTCGGACTCGATGGCGGC 70958 30 100.0 35 .............................. GAGTACCGGCTGACCGGTGCGGGAATGAGCTGCCG 71023 30 100.0 36 .............................. ACTGCCACGGACGCCGAGCCGGGCGACTACTCGCCC 71089 30 100.0 37 .............................. TAATTCAACCTGCCGATCACCGAGCAGTACTCGGCAA 71156 30 100.0 36 .............................. ATCGCCGCTTGCCGGCGGGCATCATCTGGCACTGTG 71222 30 100.0 37 .............................. ACCGGCACGGCGGAATGCCTGGACGTCAAGGAAGGCA 71289 30 100.0 36 .............................. GGGACGTCACCACAGCAGTCCGCGAGCGCGCCGCCC 71355 30 100.0 37 .............................. AGGCCCTGATCACCCGGCACGGCGTCGATCGCCTCGT 71422 30 100.0 36 .............................. ATCAGTGGGCCGATGATGGACTGGAGCTCCCGACGG 71488 30 100.0 33 .............................. ACGGCTGGGTGGCCCCGGAATGGGAACCGTGGG 71551 30 100.0 36 .............................. GTTGCACGCCCTGGCGTGGGGGAATGAGAGAGGCCG 71617 30 100.0 35 .............................. ACGGTCTGTCCCTCGGCGAGTTGCAGCCGGGCCGT 71682 30 100.0 36 .............................. AGCTAGGAGTGCTGGTGTTGCTCTCCGTGTTTTCCT 71748 30 100.0 36 .............................. GGGGTCGTGCGGGCCAGCAGGCTCGTGATGAGCCCG 71814 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 39 30 100.0 36 GTCCGTGATCATCCCTGGAGGGATTGAAAC # Left flank : CCGCGCGACCGGGCTACGCGGCGGGGAACGGGTCCTGGTCGAGGCGGCGGCCGGCCGGTTGCGTCCGGTGATCGGGCAGCGGTTCCCGCTGGAGCGAGCGGCTGACGCGCATGCAGCCGTCCAGCCGCGGGCCACCATGGGCAAAACCCTGCTGGAAGTGCGGTGATGAGTCTCTCGCTCTCAAGATCTGTTGCGAGTATCTTCACTGGGTTCAGCGCAGCGTGTTCGAAGGGGGCTGTCCGCCGCCCAGTACCAGGCCTTCCCCCCCGTACTGCGCACCAATTTCGATCTTGACTACGACGGCATCCGGATCTATCGGACGCGGTCCCCGCACCTGGTGGAGACCGAGTGGCTCGGACACGAGATGGGCAACCAGGACTCAATCCTCTATGATGAGGATCATGGCTGTGACCTGGGGGTTTGCACTACCGCCGGACCGCTGCAAAACAGTCCTCCGATCAGCCCCGCAAACAGCCCCTGACCTGCGCGTTTATCCTCGG # Right flank : CCGGTCGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTGATCATCCCTGGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA // Array 1 54-1129 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFR010000055.1 Frankia symbiont of Coriaria ruscifolia isolate Cv1_Ct_nod1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 54 30 96.7 36 ....A......................... CAGCACCCGGCCGATGCCCTTGCTGGACCCGGTGAC 120 30 100.0 35 .............................. TCGGCCTGGACCTCGACCGCATGGCCCTGGCCGTC 185 30 100.0 35 .............................. ACTGCGGGTCAGTGTGTGCCGCGGCGGTTGGCCAG 250 30 100.0 36 .............................. CTGTCTGCACGCGGTACGGGGAAACTGCGTCCGCCG 316 30 100.0 36 .............................. CTGCCAGCCGTCAGGTCCATCGACCCGGCGATGCGG 382 30 100.0 37 .............................. GCTGGTCCCCCTACATGCGGGCAGTCTGGCGGGTCAG 449 30 100.0 34 .............................. GGGGTCGGCCAGATCTCCCAGAGCCACAGGCCCG 513 30 100.0 35 .............................. TCGATGGTGGCCTCAAGCTGAGGCCATCCCGACTG 578 30 96.7 35 ...C.......................... ACTTGCCGTACCAGACGTTCGCGAACCGGATCCGC 643 30 96.7 33 ...C.......................... GGCTCGTAGGCCACCCAGTCGACGCCGGGGCGG 706 30 93.3 33 ...CA......................... CCACCGACAGCCCGCTGCTGACCACCGACACGG 769 30 96.7 35 ...C.......................... CGGCGCGAGCCAGCCTGATCGCGTTGAGCGTCGCT 834 30 93.3 33 ..TC.......................... GCGGGAAGGTCTACGCCGAGCGGTGGCGGCGCT 897 30 93.3 37 ..TC.......................... GAGGAGGACGCGCGGGCCGCGGGGGACGCGCTCGCGG 964 30 96.7 38 ...C.......................... CATGGCAGCAGGGATCGGCTGAGCGCGTCGTCGCTGGT 1032 30 96.7 38 ...C.......................... GCCGTGGTCCGATCGGGGCGGCGTCTGGCGTTGTCATC 1100 30 93.3 0 ...C.........T................ | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 97.3 35 GTCTGTGATCATCCCTGGAGGGATTGAAAC # Left flank : AAACAGTTAAGAACTAAAAGCTCAGATTTCCGGCGCAGTACACTAGTAGCGACG # Right flank : CCGTAGGGGCGAGGTGGAGCGTCAGTCTCGGGGATCGCCAGATTCTCAAGCCATGCCTTCCATGCCGGTTGTTCTCGCTCGACGAAGCCGGGGGCGTCATCCTCGGAGAACAGATAGCCCTCGATCGCGGTGGCGGTCACGCCGTCGCCTTTGTCGTGGGCGAAGAACCCGAGAAAGCCGGGTACGGGATCGGTCAGGCGCAGCAGCAGCTCGTTCGGTCCCGGCGACATGCTGATCCGCTCGACATGACCGGTGAGGCCGCGAACGTCGACCGCTCGACCGGCCTTTTCGGCATCGAGGGCCTGGCGCAGGGCCGACCATACGGCGTTGACGCGGCCCGGTATGTCGGCGGCGACCGACATCGAGGTGACTCGCTGGCCCGGGAAGTGCGTGAGGTAGAGGCGGAGGTTGTCGAAGAAGGGCACCCAGTGCTTCTCCATGTCGTCGAAGAACTCCTGCTCCCAGCCGGCGCCCGTACCGAATGCGTTGCTCACGACCTG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGTGATCATCCCTGGAGGGATTGAAAC # Alternate repeat : GTCCGTGATCATCCCTGGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : NA // Array 1 17-2938 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFR010000054.1 Frankia symbiont of Coriaria ruscifolia isolate Cv1_Ct_nod1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 17 30 100.0 34 .............................. TTGGGTTGCATGGTGAGGATGAGCTGGTTGGGGC 81 30 100.0 40 .............................. TGCGGACAGTTCGCGCGCTGACGCTACGCCGTCCGGGCCA 151 30 100.0 34 .............................. AAGAGTGGGCGTGCCGGCGGCGGGTGTCCGGCAG 215 30 96.7 36 .....................A........ AGGTGGTTGCCGTCGTGGCCCGCGGGGAGTCCGCAG 281 30 100.0 36 .............................. GGTTGAAGGTTGACGGTCTCTCCTAGCACGGGCCCG 347 30 100.0 34 .............................. GCGGCCGCCTGGTGGTCGAAGACGGCGGTCGCGA 411 30 100.0 36 .............................. ACCGTCGTCATGCCGACATCGCCTCGTCGTCAGCGG 477 30 100.0 37 .............................. CCGAGGAGCTGGGCCTGGTGGCGCCCGAGCGGCCCTC 544 30 100.0 34 .............................. GGTATCTCCTCTGTGGCCCCGTTAGGATATATAA 608 30 96.7 35 .............T................ AGAACCTGGCGAACGGCCACACGGTGCATTTGGGC 673 30 100.0 35 .............................. CTGAACCGGGGGCGGACATTTCTTAAAAATCTCTA 738 30 100.0 36 .............................. CCGCTGCATTGGGCGGCCACGGTGGCGATCACCGCC 804 30 100.0 37 .............................. TCGAACTGGCCGGCTATCTCTGTCTGGTCATCGCCGC 871 30 100.0 36 .............................. GCGTGGTTGGACACCATGGGCCTGGTCCGTGAGGAC 937 30 100.0 35 .............................. ACGGCAAGAAAGAGTCCTGCGCCCGACAGGTCAAG 1002 30 100.0 37 .............................. ACCACGCGTGTCAACCACCAGTGGGAGCGATGCCCGA 1069 30 100.0 35 .............................. TGGTAGAGCGGTAGCTTAAGATCGGCGCTCAGCTT 1134 30 100.0 36 .............................. CTACGACGCGCCTCCTGGCACGTTCGCTGCTTCACG 1200 30 100.0 35 .............................. CCATAGTCGACTGGTCGACTGGTTGACGTCAACCG 1265 30 100.0 36 .............................. CGGGAATAGCTGACCGCGTCGTCGCCGTAGAGCACC 1331 30 96.7 33 ..............T............... CCGTCCGCCAGCGCGGCCAGGCCCGCGCCGAAG 1394 30 100.0 33 .............................. ACCTCGTTGAGTTGCATGGTCCCTCCTACGCAT 1457 30 100.0 36 .............................. CTGAGCGCCACGGCATCGCGCTGATCGAAGACGCCG 1523 30 100.0 35 .............................. GCGCAACCGCGGCGTCTACCGGGACGCGCTGGGCT T [1552] 1589 30 100.0 35 .............................. CCATCAGCGGGACCAACATCTTGTGCGGGCTCCAG 1654 30 100.0 35 .............................. TTGCTGGCGTAGTAGTGCCCCATCCCTTTCTCAGA 1719 30 100.0 34 .............................. GTGCAGCTCAATGGCGCACAGCTGGCTGGCGCCG 1783 30 100.0 35 .............................. ACGTGCCGGTGGTGGTACTACGGGATCGGATCCAG 1848 30 100.0 35 .............................. TCGGCCGAGTCGGGCGCGACTGTGAGCGCTGGCTC 1913 30 100.0 36 .............................. AGGTCCGCCATAGCTGCCACGACGAGGACGGGCGGC 1979 30 100.0 36 .............................. CATCAACAAAGGGTCGTGCCCGGTTCACGGCAGCCA 2045 30 100.0 36 .............................. GCGCCGGTGGTCTCGGCGAAACCGGCCAGGTACCGG 2111 30 100.0 42 .............................. ATTGGAATCGTGTCCCATCCCCATCCCCATCCGTTCGTCGCC 2183 30 96.7 36 A............................. TCTATGGCGCGTATGGACGGCCATACCAGGAATTTG 2249 30 100.0 35 .............................. ACGCCTGGGCGCCGATGACGCTACCGCAGGTCCAG 2314 30 100.0 36 .............................. CCGACCGCCGAGGGCGATGCGATCGTGGCGGCGCTG 2380 30 100.0 35 .............................. CTGAGCCGTTGGCGTCCAGCGGGCGCTTGGTCCCT 2445 30 100.0 38 .............................. ATGAGCCTCCGCGACCACCACAACCTCACCGCTCGGAC 2513 30 93.3 36 ...T.............A............ ACCTCCCAATCGGCCCACGCGATCGCATGGGTCACG 2579 30 96.7 36 .....C........................ ACCTCGTGGGGCTCGACCGCCCCGGCCAGCGTGTAG 2645 30 96.7 36 ............................G. ATCGCAAACGTCGCGCCGTGACGTGCGGCGATGCGG G [2674] 2712 30 100.0 35 .............................. CGCCACACGGGCGGGCGCTTGGCCCCGACGTGCAG 2777 30 100.0 36 .............................. GCTCGGTGCCGGGCCGTGGCGAGCTGGACCGTGGTG 2843 30 100.0 36 .............................. TCGGTGACGGGGTATCCCAGCACCTCCTTGATCAGC 2909 30 96.7 0 ......................G....... | ========== ====== ====== ====== ============================== ========================================== ================== 45 30 99.3 36 GTCCGTGATCATCCCTGGAGGGATTGAAAC # Left flank : TGTCTGGACCAGCCAAG # Right flank : CACCGCCGGTGATCGCGAGATTGAAAAACTGGGAGTCGAAGTCCTGCCCGTATACGGTCGTACCTATGACGCGCAGACGAAGTGCGTCGCTTGCCAGAACGCGGGGGATTCGCTCCTCCCGGGTCTTCGATCCGAAGATCTTGTCGGTGACCGTCCGTCTGCTCGGCGGCCACGGAGCTTATGACGTCGTCGCCACCGTACGTGGTGGCGGCCGCTGTGAACTCGCGGAACCGTTCTCTGCCGCGTTCCGCCTTGCCGGCCTACTGGCCTGATGTTCTCTACTTGAGACCACGCCTTGGCCGATGGACGGCCGTTCCAGGTTCATGATGATTTTGATCATGGTGGCCGCGCTGCCGCTGGCCGAAGCCAAGTCCCACCTGTCGGAACTCGTCGGGCGGGTTCACGAGCAGTATGAACGTGTCATCGTCATGGTCCACGGACGCCCATCGGCCGTCCTGGTGGCCATCGAGGATCTGGGGTCGCGGGAGGGGATGGTGGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTGATCATCCCTGGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 2 12370-12664 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAAFR010000054.1 Frankia symbiont of Coriaria ruscifolia isolate Cv1_Ct_nod1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 12370 30 100.0 34 .............................. CCGATGGCCTCGGCCACCAGTGGTTCGATCGCGG 12434 30 100.0 38 .............................. CCGCTGCGCGGGCGTGGCCGGTGCTCGGCACGACCCCA 12502 30 100.0 37 .............................. CGGTCAGCGTTGACGATCCGGCCGATCTGAACCGCAG 12569 30 100.0 36 .............................. GCGCGAACTGACGCGCGACCGTCCCACGAGAGAGGA 12635 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 100.0 36 GTCCGTGATCATCCCTGGAGGGATTGAAAC # Left flank : GTTCAGCACAGAGGATTACGCCGCAAGGTCTCCTACGAGGAGATCATTCATCTCGAAGCCCTCAAGATTGTCCGCCTCTGCCTGGAGGGCACGCCGTACAAGCCCTTCCGGCCCTGGTGGTGAGCCATGTTCGTCGTCCTCGTCTACGACACCGCGGCCGAACGCAACCCTCTCGTCCTCAAGACCTGCCGCAAGTACCTTCACTGGGTTCAGCGCAGCGTGTTCGAAGGGGAGCTGTCCGCTGCCCAGTACCGGGCCCTCCTCGCCGCGCTGCGCACCCATCTTGATCTTGGCTACGACAGCATCCGGATCTATCGGACGCGGTCCCCGCACCTTGTGGAGGCCGAGTGGCTCGGACGCGAGATGGGCAACCAGGACTCGATCCTCTAAGATAAGGATCATGGCTGTGACCTGGGGGTTTGCACTACCGCCGGACCGCTGCAAAACAGCCCTCCGATCGGCCCCACAAACAGCCCCTGACCTGCGCGTTTATCCTCGGG # Right flank : | # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTGATCATCCCTGGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : NA //