Array 1 22263-20652 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDK010000319.1 Salmonella enterica isolate 4516_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 22262 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 22201 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 22140 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 22079 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 22017 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 21956 29 100.0 44 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGACCGAGA 21883 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 21822 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 21761 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 21700 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 21639 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 21578 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 21517 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 21456 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 21395 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 21333 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 21230 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 21169 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 21108 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 21047 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 20986 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 20925 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 20864 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 20803 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 20742 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 20681 29 96.6 0 A............................ | A [20654] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7545-9525 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZDK010000135.1 Salmonella enterica isolate 4516_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7545 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 7606 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 7667 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 7728 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 7789 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 7850 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 7911 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 7972 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 8033 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 8094 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8155 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8216 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8277 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 8338 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 8399 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 8460 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 8521 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8582 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 8643 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 8704 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 8765 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 8826 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 8887 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 8948 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 9010 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 9071 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 9132 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 9193 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 9254 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 9315 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 9376 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 9437 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 9498 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //