Array 1 23470-20957 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGZ01000003.1 Streptomyces sp. rh34 scaffold3.1.size116847, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================ ================== 23469 30 93.3 32 ........G....................A AGGAGTTCGCTCGCCTGTTCCCCGACGGCGCT 23407 30 93.3 31 ........G....................C ATCGGGATCGGCTGGGCGTGGGCGACGCGGT 23346 30 93.3 32 ........G....................C CCGATGAGCCGCCTCAGCAAGCCCGACACCAC 23284 30 96.7 31 ........G..................... CTGGCGAGGCTGACGCTCGCCTCTTCGGCGA 23223 30 93.3 31 ........G....................C CAGACGGCGGCGGCGCGCAGTTGGTCGGCGG 23162 30 93.3 31 ........G....................C ATTCGGCAGGGCTCCCCACGCGATGACATTG 23101 30 96.7 31 .............................C TTGAGGGTGCCGCCGCTCGGGACTATTCAGG 23040 30 100.0 31 .............................. AGCCGGAGCCCGTTCTCGTCAACCTCTTTGA 22979 30 96.7 31 .............................C TGCGGTCGATCGCACGCCGGGCCCGTGCGGC 22918 30 96.7 31 .............................T CGACCGGACGGAGGGGGGCCCTACGCGTACG 22857 30 100.0 31 .............................. CGGCATCGTGTGCGTCGCATGGGTCGACCGG 22796 30 96.7 31 .............................C ATCGATCCACGGGGAGGACGAGATCAGCAGT 22735 30 100.0 31 .............................. ACAACAAGAACCTGACGCGCCGCCGTCAGAA 22674 30 96.7 31 .............................A GCCGGGTCTGGGACGCGAAGGCGGAGATCTG 22613 30 100.0 31 .............................. ACGAGGACACTCCACTGGGCGTCCACATCAG 22552 30 96.7 31 .............................A AGGGCCGCGACGGCAACGGCCTGGAGCCGTT 22491 30 96.7 31 ...........A.................. TGAAGGTCATCTGGACCGGCCACACGTCGGT 22430 30 86.7 31 .............CC........A.....A GGGGGGCGTCCACCGAACGGGACAGCGGTGC 22369 30 70.0 30 ...T.....A...AG.T.A...C.AG.... GCGTGGATGTGTGGAAGTTGGGTTCGCCGG 22309 28 83.3 80 .....T..-....C.....T-......... ACGGTTTGGCAGTTCCTGGGCGCTGTTCCCGGCGGCCCGTACCAACGCCTCCGTCAGGTCCCCCCGCCGCCACAGCACTC 22201 30 73.3 31 .........A..TAC.TA.......CG... GTCCGTCGCCGTCGACACCTGGAAGGCGTCG 22140 30 93.3 31 ..A..........................T CCAGGGGCGCGGCCACGAACAGCATGCGCGT 22079 30 93.3 31 ...........A..C............... AGACGATCAAGCTCCTGATGACCCGGACCGG 22018 30 90.0 31 ...........A.CC............... CCGTGGTGGGCATCCAGACCCGTTGGCACCC 21957 30 86.7 31 ...........A.CC........A...... GCTCCAGGTGGTCGGTACGGTTGGTGGGCCG 21896 30 90.0 28 ...........A.CC............... TGACCACGGGCACGGGTCGTCGGGGGTC 21838 30 93.3 31 .............CC............... AAGCGGCGCCGCGACCGTGGACGAGGACGAA 21777 30 83.3 31 ........T..A.CC.T............. GCCCCCCGAGTCCTCGGCATTTCAGCTGCCG 21716 30 83.3 27 ........T..A.CC..............A CCATCGCGACCGGGAATCTCCGTCCGG 21659 30 90.0 31 .............CC..........C.... CCACGCCGGGCCTTGCCGACGTGCGGTCGCT 21598 30 90.0 31 ...........A.C...........C.... CCTGCTGTCCTGCCTCGGCCTCGCGACCCGG 21537 30 83.3 31 ...........A.CC.....A........T CCCTGGCCACCGACTGGTCGTCGGTGCTCGT 21476 30 86.7 31 ...........A.CC..A............ CAGCATGACCCCCGAAGACGCCGTCCCCACC 21415 30 93.3 31 .....T......A................. GCTTCGGTTCGGCACCGTCGAGGAGTGCGTC 21354 30 100.0 31 .............................. GTGCACGGCGGTTGGTGTTCCTGGTCCGGAC 21293 30 90.0 31 .............CC..........C.... ACGGCGGCACCGCCCCGGTTCGGGACAGGAT 21232 30 80.0 31 ....C....C..T.C..........C...T ACCCGCGCGTGGTCCAGGTCCCGTACGGCTC CC [21216] 21169 30 93.3 31 .............CC............... AGGTGGAGCGGGCGGTCAAGAAGCTGGTCCG 21108 30 86.7 31 ........T....CC..............A ACGCCGCGCAGGTCGCCGAACGGCGGGCCGC 21047 30 93.3 31 ...........A.............C.... CCATGACCTGGAGCGGGAGGGAGACGACGAC 20986 30 66.7 0 .............AC.T...CC...CGGGC | ========== ====== ====== ====== ============================== ================================================================================ ================== 41 30 90.7 32 CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Left flank : GGTGCCGCGTGGCCTGCTCCCCGCACCCGCGGGGATGGTCCCAGGCAGGAGTCCTCCTCACGCTTCCGCGCCTCCTGCTCCCCGCACCCGCGGGGATGGTCCCCGGATCTGGGACGGGGTGCCGGACACGGCCCCCTGCTCCCCGCACCCGCGGGGATGGCCCCTGGGGGATGGTCGGGACGATGTCGACCGCCGCCTGCTCCCCGCCCGTGCGGGGGTGGCCCCACGTCGGTGTAGGCGTGGGACGGGCCGGTACGCTGCTCCGCGCCGCGAGCATGTGGTCCCTCCGTGGTCGCGGACAGCCGACCAACGTGCTGTTCCCCGCACCCGCGGTTGGCGTCCGTGCTGTCGAGGTGCTCCACCACGATCCGCGGGCTATAAGCTCGATGCCACGGCATCAGCCACACGGAGGCGGAGTCAACTTCATGACCGATATGTCGCATTCGGTGAAAGTGCTCGAGAAGTGCACCAACCCGCTGTAAAGCTGCAGGTCAAGAAGT # Right flank : CAAGTCGACACCGGACACCTCGCCGCCGCTCACGACTGCCCCCAGGTGGAGTAGCTGAGGTTCAGGTGCCCGAGCCCGGATAGGTGCTGCGCCTGGTCGACCAGTTGGTTGCTGAACAGTCGCCTCGCTGACGGCTCGCCGTAGCGGTCGATGTGGTCGAAGACGACGCTGTGGTCCTTCATCGCCCGCACCCGCCAGTCGCGCACCTGGTCGGGGGTCAGGTCCTCGAGGACTAGCTCCTGGTCGTTGTCGACGTCGGCGGTCTCCGGCTCCAAGGCCGGAGCGGCGGCGGCCGGGCGCGGTGTGGGCAGCACGACCGGGGCGACCGGCGCGGCCGGGACGTCGTCGTCCGGCTGCGCGGCGACGGCCTCGGTGCGAGCCGCCTTCGCTTCGGCCTTCCGGGCGCGGTACTGCTCCCACTCGGACGCCTGCGCCCACGCCCTGGCGGTCACGGTTTCGTGCAGTTGCCGGTCGGTGGCTGCCCGCCGCTCGGTCTCGGA # Questionable array : NO Score: 4.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:-0.07, 8:1, 9:0.16, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [51-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 25424-23685 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGZ01000003.1 Streptomyces sp. rh34 scaffold3.1.size116847, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 25423 29 100.0 32 ............................. CAGTGGAGGCTGTCGTCAGGACGGTTCCACTC 25362 29 100.0 32 ............................. CGCAACATCGTCTCCGCCTTCGGCTGGGCCTC 25301 29 96.6 32 ............................A CAGGGAGAAGCCATGGCATACAAGGCACCGGA 25240 29 100.0 32 ............................. AGCGCCGCGATCAGCGTCGCGATCAGCGACGT 25179 29 100.0 32 ............................. GGCAGCCTTCTGGAGCCCCGACATGCCCTGGA 25118 29 100.0 32 ............................. CCTCGCCTACGGGGGAGCAGCCGGCTTCCTCG 25057 29 100.0 32 ............................. GGGTTCTTGCTCGCCGCCTTCGCCGCGGTCCG 24996 29 96.6 32 ............................T CACTCAGAAATCGAGGACACCGTGAAACAGAA 24935 29 100.0 32 ............................. TTGGTCGGGGACTCCGACGGGTCACCGACGGA 24874 29 100.0 32 ............................. TCCCTTACCAGAGCTCCACAGTATGTCTCGAC 24813 29 100.0 32 ............................. GCGGCCGAGGACGCCGACCTCTCCGGCTGGAA 24752 29 100.0 32 ............................. ACGGAGAGGTGTCGGGTGAGGCAGGTGGTTAC 24691 29 100.0 32 ............................. CCTGCGTGTCGGCGACACCCCCTCCGGACAGC 24630 29 100.0 32 ............................. TCGGCACGGGCTTCCTCGAAGGCGTGCTCTCC 24569 29 100.0 32 ............................. CGCAACCGCTTGTCGACCGCCCGGCGCAGCTC 24508 29 100.0 32 ............................. CGGTGCCGTCGCGGACCAGGAGTGCGGCGTCG 24447 29 100.0 32 ............................. GCGCCCTTGCTCGGCGCACCACTTCTTGAACA 24386 29 100.0 32 ............................. GCGCCCTTGCTCGGCGCACCACTTCTTGAACA 24325 29 100.0 32 ............................. TGCGACTGGGACGGCGGCGAACGCCCCATCCC 24264 29 100.0 32 ............................. GGTCGCGGACCCGGGCGTCTCGGACCGTGGCA 24203 29 100.0 32 ............................. GTCGGCTCCCGCCGAACGCCGGGCGCCGGAGG 24142 29 100.0 32 ............................. CAGACCGTCACCCTCGACCTCACCGCGTTCGA 24081 29 93.1 35 .............GT.............. GTCGACATCATGTGGTGCGTCCCCGTAGCCATGGC 24017 29 96.6 32 ...........A................. TGACAACCCGGAGTTGTCGGGTGCCGCGTGGC 23956 29 96.6 32 ...........A................. AGGCAGGAGTCCTCCTCACGCTTCCGCGCCTC 23895 29 96.6 32 ...........A................. CGGATCTGGGACGGGGTGCCGGACACGGCCCC 23834 29 93.1 32 ...........A.............C... TGGGGGATGGTCGGGACGATGTCGACCGCCGC 23773 29 82.8 32 ...........C.GT......G...C... ACGTCGGTGTAGGCGTGGGACGGGCCGGTACG 23712 28 69.0 0 .......G...C-G..A.CATG....... | ========== ====== ====== ====== ============================= =================================== ================== 29 29 97.3 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CTGCTGTCAGCCCTGGTCACGGTCGGCGACCGGCAGATGCACCCGCGATTCCCCACCATCGCTGAGCAGCTCGGCGTACCGCCGGACGCTATCTGACGCAGCAGCGCTCCACCTGGAGCTACGAGGTCCTGAAGTCCCATCAGCGCTGGCGCCACCCGTGCTGATGCGGAAGTCTGCTCCCCACGCACGTGAGGATGGTCCCATCGGCATGGGCGCGGTCGCGCTCGCCCTCACCTGCTCCCCACCAGGTGGGGATGGCCCTGGGCGGGTACGGGCGGGCTGGTGCTCTCCGCACTTCTCCCCTCATATACGTGGGGATGATGGCCCCTCCGTGATCGCCGGCCAAGAGGCGCGATTACCTGGCGGGACCAGAACTGTTCGCCGAGTGCTGGGGATAGCCTTGTCGTCACGGCAGGAGAAAGCTGATGGTCGATATGTCGGATTCGGTGAAAGTGCTTGTAAATCACGCTTTCCCGCTGTAACGCTGCAGGTCAGGAAGT # Right flank : TCCGTGGTCGCGGACAGCCGACCAACGTGCTGTTCCCCGCACCCGCGGTTGGCGTCCGTGCTGTCGAGGTGCTCCACCACGATCCGCGGGCTATAAGCTCGATGCCACGGCATCAGCCACACGGAGGCGGAGTCAACTTCATGACCGATATGTCGCATTCGGTGAAAGTGCTCGAGAAGTGCACCAACCCGCTGTAAAGCTGCAGGTCAAGAAGTCTGCTCCCGGCGCGTGCGGGGATGGTCCCAAGGAGTTCGCTCGCCTGTTCCCCGACGGCGCTCTGCTCCCGGCGCGTGCGGGGATGGTCCCCATCGGGATCGGCTGGGCGTGGGCGACGCGGTCTGCTCCCGGCGCGTGCGGGGATGGTCCCCCCGATGAGCCGCCTCAGCAAGCCCGACACCACCTGCTCCCGGCGCGTGCGGGGATGGTCCCGCTGGCGAGGCTGACGCTCGCCTCTTCGGCGACTGCTCCCGGCGCGTGCGGGGATGGTCCCCCAGACGGCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 27409-26768 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGZ01000003.1 Streptomyces sp. rh34 scaffold3.1.size116847, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 27408 29 75.9 32 .G.A...AT.TG................T GTGGTGACCCTGTACGCCCACATGAGCCGGAT T [27395] 27346 29 100.0 32 ............................. AGGCTGCGGCCATGCACGCCGCGTGGGCTTCC 27285 29 100.0 34 ............................. TGGATGCCGTTGATGCCGACGTAGAGGGAGGCGG 27222 29 75.9 32 .........ATGTA..TA........... GGTCCGTCGCCATCGACACCCGAAAGTCTTCG 27161 29 96.6 32 ..............T.............. CACTTCTCAGGGTGACCGTCCTCGGTTCCCTG 27100 29 89.7 33 ...........G..T...A.......... CGCACGGCCAGCTCGAGGGCCCGCGGGCCCGTA 27038 29 96.6 32 ...........G................. GTCGCGCTCCTCCTGGTCGTCGCCGTGGTCCT A [27029] 26976 29 86.2 32 ...........G..T...........T.A GACGCCCGGCACCCCTTCGAGACGTGGGCGGC 26915 27 82.8 31 ...........G.--..A.......C... TACCGTTGAAGTACTCCGTACGCACCGGAAG 26857 28 86.2 33 .....T........T.G........-... TCCGTGGGCCGGTTTGCCAGGGCTTGTCGTGGA 26796 29 79.3 0 .......G..TT.T.......T..T.... | ========== ====== ====== ====== ============================= ================================== ================== 11 29 88.1 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GTTCTCTATCCGTTCGTGTGCTCGGTCTGGTTCGAACGGGATGCTGGATCGGGTGAGTTGGCTGACGTCAGGGCATGAAGAGAAGGGCCTCTTGGTAGCTCGCGGTTGTCGAGTCCAGCGGGAAGCAAAAGGCCCTGTTGTCGAAGTGTTGCGTGGTCACGGTGGCCTGGCCCAGTCCGTTCACTCCTGGGTGTGACTGTCCCGCCCACAGGTTCGGGAACGCGGCCGACCGGCCGGAGCACCAGCCCCGGCACGGCTCGGACAAGACTGATGCGGAGTGGGCCCTGGTGCGGGGTCTGCTGCCGGTGGCGGGATGGCTGGAGGGCCGGGCGGGCGTTCGTTCTGTCCGTACTCGTGGCGGTGCGGGATGAGCAGGCCGGTGCCTCGGTAGCACCGTCGGCGATCACGGTGGTGCGGCCGACGGCTTGTAGGCCACGGTCTAGTGTCCTAGACGTCAGCTATTCCGTGGTGTGAAGTGTCTCTCGTGTCAGTCCCAGTGC # Right flank : ACCTCCGAGCAACATGCGGATCGCGTTGCGAAGCGCTCTTGTGCGCAGCGGAGTTGTGAGCCACCTTGGGTGGGTAGTGACAGATCAAGGCACGGCGTCGTGCCTGCGGGTTGGGGGCGGCTCTTGGCGAACGGGCGCGTGCGGCTCAGTGGCGGAACAGCGTGGCAGACCGATTTCCGGCGGCGAACAACAGGCCGCCCGGTTCTGAGCGCTATGGATATCGCGATGATCCGTCGCTCGCTGAACGGCACGCTCACCGAACTGCAGCGTGATCGATCGCTTTGACGTGGTCAAGGCGGCGGATCTCTTCGAGTGGGCCTGGCACCAAGCTTCCCAGGCTCCGCCGCGCGAGACCCGGGAGCAGCGGGTGCAGCTCAGGGATCTTAAGGAAGTGTTGGGATCACGCCGGTGGCGAGAGGAGGAGCGTCGCCTGGCCGCGCAGGAGCTGACTTCGCGGCCGGTGGAGGGCATGCCTGCGCCTGGTTGGAAAGTCGCGAAGC # Questionable array : NO Score: 4.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 42243-40373 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGZ01000003.1 Streptomyces sp. rh34 scaffold3.1.size116847, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 42242 29 100.0 32 ............................. GACCCCGAGCCCATGGACGACCCGAAGCCGGA 42181 29 100.0 32 ............................. TCGCGGAACGGTTCAGTGTGTCGCGAGCCGTC 42120 29 100.0 32 ............................. CCCTGCCGCCCTCCTCGTAACCGAGCAGTAGC 42059 29 100.0 32 ............................. GAACGCCGTTACGGCCGGAGCTGTGTCCGGTT 41998 29 100.0 32 ............................. GGCCGGCAGGTCGAGCACCTCGTCGAGCCGGA 41937 29 100.0 32 ............................. TTCTAGAGGTCACGTCAAGGCATTCACGCAGG 41876 29 100.0 32 ............................. GCCACCGGCCTGCCACGCCCACGCCGTACGCA 41815 29 100.0 32 ............................. CCGGATCCATCCCGGACGGCCGCCCCGTATGC 41754 29 96.6 32 ............................T CCGGAGACGCCGACGCCGATCTGTACGTATCC 41693 29 100.0 32 ............................. AACCTGCGGACCGGCGGGGACATGGCGCGGCG 41632 29 100.0 32 ............................. GAGCTGGCCCGCGGCGACCTCAAGTCGGGCCG 41571 29 100.0 32 ............................. AAGCTGGAGGACGGCGGCTGGCTAAAGCGGGA 41510 29 100.0 33 ............................. GGAGGCAGACGAGCGGGTGACTGCATGGGTGCC 41448 29 100.0 32 ............................. GTCTGCCCCTTCTGCGCACGGCTCGCGAGGGT 41387 29 100.0 32 ............................. TCGGCGCCCTCGATGAGCAACGCCTCGTTGTC 41326 29 100.0 32 ............................. GCGCTAATCGCCGATGCGGCAGAGCACGCGGA 41265 29 100.0 32 ............................. GGACAACCCGGGCAGCCGCACGGCAAAAAGGG 41204 29 100.0 32 ............................. CTGAACAAGGTCGCGAACGAGGCGGCAGGGAA 41143 29 100.0 32 ............................. GGGACGAATCCGGGGTCCGTCGAGGCGTGGAC 41082 29 100.0 32 ............................. ACAAGCGTAGGTACCACCGGACCGCCGAGCAG 41021 29 100.0 32 ............................. GTGACCGACAGATCGCCGCCCTACGGAGGACC 40960 29 100.0 32 ............................. CGGGGTCAGCCCGGTGACGGCGCGCCGCGTCC 40899 29 100.0 32 ............................. GTCTTCGTCGATGCCGAGGGTGAACCCGTCGA 40838 29 100.0 32 ............................. GCCCCGCGCACCAAGCCGTCCCAGCTGAGCAA 40777 29 100.0 32 ............................. CAGGACCGGTGAGGCCGGTCGGCCCGGTCGAG 40716 29 100.0 32 ............................. GCCCGCCGACCAAAAGGCCGGCGGGCGCCGTC 40655 29 100.0 32 ............................. AACCGGAACCACAAAGGCGCGTGGGGGCCGGT 40594 29 96.6 41 ............................G ATTTCGCCCCCGAGCGTCTCCAGACCGCAGGGTCCGGGGCG 40524 29 96.6 32 ............................T GGACCGCTCCCCTGCCGAGGGCGTGAAGGCTC 40463 29 100.0 32 ............................. GCAGACTCCGGGTGGCTTTGACCGACCGGTCC 40402 29 86.2 0 ...........A..........G....TG | A [40375] ========== ====== ====== ====== ============================= ========================================= ================== 31 29 99.2 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GAGCGACAGAGGGCTGAATGTGGCGTCCGGGGTGAACTACGGAACGGACGAGCAAGAGGCAGCAATCTGGTGACCGTGATCGTCCTCACCAACTGCCCTCCAGGCCTGCGGGGCTTCCTCACCCGATGGCTCCTGGAGATCTCCGCCGGCGTGTTCATCGGCAATCCTTCATCCCGCATCCGAGACGTGCTGTGGGACGAAGTCCAGCAGTACGCCGGACAAGGGCGTGCGCTTCTCGCCCACACAACCAACAACGAGCAGGGCTTCACGTTCCGTACCCACGACCACTCCTGGCACCCCACCGACCACGAAGGCCTCACTCTGATCCAGCGCCCCAACGACAGCAAGGGCTCAACGAGTAGCGCTAAGAAGACAGGGTGGAGCGCAGCATCCAAGCGCCGCCGCTTCGGAAAGAGGTAGGCGGAATGTCTTATATGTCGGAATCAGTGAAAGTGCTTGAGAAACTGATGAACCCACGGTAAACCTGCAGGTCATCGAGT # Right flank : TCTAAAACCCCAAAGCCGCAGGTCACAGGCACGGGCTTCGAAGCCCCGAAACGTATTCTCCCCTTCTCGAAACGCCCCAGAGTCCGTCTCACTGTGCAGGCACCGTGCTCCTGGGCTCGACACAGGCTCGCTCCAGGAGCTGATCGACGGGCGGCCGGGCACCCGACCGCCTCGGTCCGCAGCCGCCCGTATCACCGCCGACCTCTCCGAGCTGTCCGAGCGCCGCGACTCGAAGCCCGCGCAGCGCGAGGCGCAGGAGGAACTGTGCACCGTCAGGGCCGGGACTCGCACCACATCCATGACCTGGTTCCCGGTGACATGCTCCGCGTCACCGGCTGCCCACACGCTGGGCAAGCCGATATGGCTGGTCGTCACCGAGCTCCGCCGTGCTGGAGACCGCGCCGGAGCTGTCCGAGTCGGCCGCCGTCGGCCATGGCCGTCATCGAGCGCTACGGGTCGTATGTCTGCTACTTCGACGCCGATACCACCGGCGTGGAGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 53141-55672 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGZ01000003.1 Streptomyces sp. rh34 scaffold3.1.size116847, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 53141 29 100.0 32 ............................. TGGGTTCAGGCAGCCGAGCAGCGAGGAGACCT 53202 29 100.0 32 ............................. TGGGTGATGGCCGCGTCGCATGGGTGGGAGCC 53263 29 100.0 32 ............................. TCCACCCCGGCCTGCCGCTGGACCGGAAGCTC 53324 29 100.0 32 ............................. AGGGTGGAGCTGGCGGCCCGCGCCGACGTGTG 53385 29 96.6 32 ............................A TCCCGCGGCGCTTCATGTCCGCCTTCCGGCGG 53446 29 100.0 32 ............................. GCGGTCGGCCTCCGTGGCGTCGGGCGCGGGCG 53507 29 100.0 32 ............................. CAGACCATGGGCCCGCAGGGCGGCGGCGCGGG 53568 29 100.0 32 ............................. CGGGCGTACTTCTCGTGCTCCCCCTGCGAGAT 53629 29 100.0 32 ............................. CGCGGTGACGGGCACGCGTGATACTGCGGGGC 53690 29 100.0 32 ............................. AGACTCGGCATCCGGGCGCTGGGAGGCGAAGT 53751 29 100.0 32 ............................. GGCGGAGGCGGCGAGCTGCTGGGCTGCGGTGT 53812 29 100.0 32 ............................. GCGATGTCGTCGGCGTACTCGGCGATGAGGCT 53873 29 100.0 32 ............................. GGCAACGCCACGAAACGTGAGGGAACGTGAGA 53934 29 100.0 32 ............................. TGGCCATGCGTCTCCAACTCGCGCACGCCTCC 53995 29 100.0 32 ............................. CAGTGGAGGCTGTCGTCAGGACGGTTCCACTC 54056 29 100.0 32 ............................. ATCTGCCGGTCACGGCGAGGGTTCGCGATCGT 54117 29 100.0 32 ............................. CAGGCGTCGCAGCAGAAGCGGGCCGCCGAGAA 54178 29 100.0 32 ............................. GACGAGCGGCAGGATCGGGGCGGACCACTTTC 54239 29 100.0 32 ............................. GGTGAGCCACCTGGTCCAGGCTGTAGTAGCCC 54300 29 100.0 32 ............................. GGGGTCTGACCTGCACAAACGCCGAATCGGAC 54361 29 100.0 32 ............................. GACGCGCTGTCGGACCAGGACGCCCGTATCTC 54422 29 100.0 32 ............................. GACGACGACCAGGACGACGAGGACGCTGGGCT 54483 29 100.0 32 ............................. GCCTGGGAGGCCAACCGATGAACGCCCGCAAG 54544 29 100.0 32 ............................. GCGCACCCAGGCGGCGGCCCGTGCGGTGAGAC 54605 29 100.0 32 ............................. GGGGCCGGGGAGATCGTGCAGCTGTGGCCGAT 54666 29 100.0 32 ............................. CTTGGCGGGCCGTCCGTCCTGCGGATCCTGGA 54727 29 100.0 32 ............................. CAGTTCGGCACGATCGCCCAGCGCCTCAACGA 54788 29 100.0 32 ............................. ACCATCACCACAGCGAAGCTCGCCGCCGGGTC 54849 29 100.0 32 ............................. CGTCCCGGGTGGGCCATCAACGCGGGGACCGG 54910 29 100.0 33 ............................. GTCTCCGGGGGCAAGGTTCGACAGGCCCTCCAG 54972 29 100.0 32 ............................. GGGCCGGTGCGGACAGCGTCGACTCCCAGTAC 55033 29 100.0 32 ............................. CGCAGCCTTACCCCCCGCCGGGAGCAGGAAAT 55094 29 100.0 32 ............................. GCACGCCTGTACTCGGCGTTGGCTGCCAGCAG 55155 29 100.0 32 ............................. TGCTCAGCCTCGCTGAAGGCACGCTCCAGGTA 55216 29 96.6 32 ............................G TACGGGGGGACGACGTTGGGCGGCTTGCTGCC 55277 29 100.0 32 ............................. CGCGTCCTGGTATTTCGTCTCGGCCTCGGACG 55338 29 100.0 32 ............................. AACGGCTGGGTGCGCGACTCCGAGGCCGGTAC 55399 29 100.0 32 ............................. GACCTCACCCTCCGCGCCTACGTCAAGCTCCA 55460 29 100.0 32 ............................. GCCGCCGCACGAGCAGCCGGGCCGGTCGCACG 55521 29 100.0 32 ............................. TGAGCCCACGCCAAAGCCCCGCCGGGACCTCA 55582 29 100.0 32 ............................. TCGACGAGCCGTACGGAAAGGCGTACGTGGAC 55643 29 82.8 0 ......................C..CGGT | C [55665] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.4 32 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : TCCGCGAGGTGCAGGGACACCCGCCGGCCGCCATCGGCGACCGCGGCCCGCACCAACGCCTCCGTCAGATCCTCCGCAGCTTGGTCGGCCTCTCGGTATCCCCAATCGTGCAGCTGGCGCACGACATTGGTGCAGGCCTTCTTCGGCGACCAGGCAGCTGCCTCGAGCGACCAGTTCGCCGACCGCCGGTTCCGTACCAGCATCCGAGCCCGCGCCGTTCCTTCCAGGCTCGTTTCAGGACGCGGCGGCTGTACAGGTCGCTTCGGCGGTGGTGGAGTCTTCGGCGGGTAGTCCGGGGTGTGATCCAGCACGAGTGCTCCCAGGATCGGCGCGGGTACCCATCGTAGAGGCGCGATTACCTGGCGGGACCAGAACTGTTCGCCGGGTGCTGGGGAGAGCCTTGTAGTCACGGCAGGAGAAAGCTGATGGTCGATATGTCGGATTCGGTGAAAGTGCTCGAGAATCACGCTTTCCCGCTGTAACGCTGCAGGTCAGGAAGT # Right flank : TTCGTGAACTGGGCTTCACCGTGTGCGTGTGCTCTCCGTGCGAGCGGAGGTGAGCCGCCGGGTCCCCGCGACCACCCGAGGGCCCGGAGCCGCCGTGGCAGGCGGCTACCTCACCGCACGACGCCTGAAGCGCGGATCAACGTCGTGATCACACCGCCTGGTGCTGCCTGACCGGCATCCTGCCCCGCACCACCAGTTCACGACTGTGACCCCGGCATCTGGGCCACGAAGCGGCGTGAGCCGTCGGTTTCGATCCGCCGTTCGCCTCAGCGAGCACGTCGCCCGTACGCGCCCGTGCGCTTACGCGAAGTGCCGGGGTGTCCGGCCGGGGGAGGTGGGTGGAGCTCCCGGGCGGGCGGCGTGACGGCGGAAGCCCGGGAACTCCCCCTTGCGGCGCCAAGCTGCGCCGGATCAAAGCGCCATTGAAACCAGACCTTTCACCGGGTCGGGGTCTCCGGCCCGGGCGGCGCACCGCCCCGTGTGCCGGGTTCACTCCGGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35418-34876 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGZ01000014.1 Streptomyces sp. rh34 scaffold14.1.size56867, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 35417 37 100.0 37 ..................................... GACCGCACCCGCGACCCCGGGGCCAGGTCCACCAGCT 35343 37 100.0 35 ..................................... CTCACGGAGAACGGGCACAAGATGACGCGTCAGAA 35271 35 91.9 36 ....T...................--........... GAGGTGTAGAGCGTCGGCCGGCAGGCGTTGTACCGC 35200 37 94.6 35 ....................T...........A.... GTGGCGTACGGGCTCGAGCCTCTGCCACACCCGGG 35128 37 97.3 36 .....................A............... ACCACCGGAGAGGTGGTCACCACGGTGCTCGCCGTC 35055 37 100.0 34 ..................................... TGCTCGCAACAGTGCGGGTGGAGTACGGGTACAC 34984 37 89.2 36 ..A....T........A...T................ AGCTCGGCGGACGCGCGTGCATACGCGATGCGTGCG 34911 36 73.0 0 .......T....T.......T.A......G-..GGGG | ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 93.2 36 GTGGCGGCCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : CCACCGGACCCGTGCGCACGATCTCCGGAACCCGTTCGGCAACTCGTCGAGTCGCTTCCCGCGCGGCCTCGGCGTCCCGCCCGCTGCCCTGGAGCGCGGTCAGCACGTCCTTGATCTTCTGCTGGTCCGGAAGACCACCATGATGTCCCTGTACCACAGCGGCGAACGGCAGGCTCGCGTACTCGGCGGCCAGACGGGTGCCGGCCTCCTTGTGCGGAATCCCCACCGGCTTTCCTTCCGGCTCGGCCCGCTGCAGCAGGCCGTCCTGCCAAGCACAGCACCCCTTGCCGACGTCGTGCACCAGAGCGAGGTACTCCGCGAGTTCACCAGCCCCGAAGACCTCTCCGAACCTACGAGCGAGAACCGCCGATTCACGCAGGTGATCCGCCAGTTCATGCCGCACTCCCGAGACCGGACTGCGACTATGCGCATACAACTGCCTTGAAGACATAGAGGATCGCAACGTCATGGTTTGTGGGGGCTGAGCTAGTGGGGTAGCT # Right flank : CGGCCCCTTTGGAGGGACCACGGCCATGGGGTCCGGCGATGACCTCGACCGCACCCTTCGTGTCCTCATTGCACACACTTCGGCCGCAGGTGAAGCGGCTGTATCGCGGTCTAGGAAGCGGGGAGGCTTGGGTTCATGTCCGGCCTCACCGCTGCACACAACCTTCGACGTGATAGGTCACCGCGTGGCGATCCGTACCGTCTGCGGGTGAAGTGCTCTTGGGAGTGCTTACGCAGGAAAAGGATCGGCTGCAGGAGGCACTGTGGAAGGCCCACAATCCGCCTGAGGCTCCTAGTTGTAGCCATCAGTGCGCCCTCCGGTGGCCAGCCGGTGGCCGGACGCCCTTGGACATCAAAATACCAGCGGGTACAGGCCAACCAGCCACACGTGCTCTGATCAGGCAAAACGTCACTCGGTAGTACGGTCAAGCACCACGCAACACGAACGCTCACGGTCTCGTAATGCGTAGGTCCCAGGTCCGAGTCGCCAGGGACTTTTCA # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGCCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-18.90,-21.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 44618-43727 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGZ01000014.1 Streptomyces sp. rh34 scaffold14.1.size56867, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 44617 36 86.1 39 ........AC.T...A....T............... ACCGGAACCGCGTCTCAGCCCAGCGACATCATCCGGGGG 44542 36 88.9 36 ........AC.T...A.................... TGGCCCCGGGTGACGGACTCGATGGCGCTGACCAGG 44470 36 94.4 36 ..A............G.................... CTCGGCAAGGCCGGCTACGGCAAGACCGAGATGAGG 44398 36 100.0 37 .................................... GACGAGGTGGTCACCGGGATTCGTCACCACCTAGCTG 44325 35 91.7 36 ..........T..-.....G................ TTGCGCTCGCGGCGGGCGGCAGCCTGATCGGTGAGG 44254 36 86.1 18 .C.............GA..T.G.............. CACGTCTTCGCCGCCTTG Deletion [44201] 44200 36 77.8 35 ...T.TG..CTG...G.....G.............. GTGTCACGGGCCAGCAGCAGGTTCAGGGCAGCCAG G [44189] 44128 36 94.4 36 .............T.G.................... CTTGGTGTGGGCCGGGATCACCCGGCAGCAGGAGCG 44056 36 88.9 36 .........C.....G.....G.....C........ CCACTGCCTCGGCGCCCCGCTGGCCACCGGCGAAGG 43983 36 91.7 38 .............T.G..A................. AACCCGGGCTCCCCTCTACAGCCCTCCGCGCGGACACG 43909 36 86.1 38 .A.......C.T...A...........A........ CACGGCACGGTCAACGAGCGGCCGGTGACGTGGAGCGG 43835 36 86.1 36 .........C..A.GAA................... TCAGGATTCGTGGGCGAACAGGCCGTCGAAGTGCGT 43763 36 61.1 0 GT.GC.GTCGG.CT.GA.......A........... | A [43746] ========== ====== ====== ====== ==================================== ======================================= ================== 13 36 87.2 35 TGGCGGTCGTCCTCCCGGGCGACCGAGGATCGCAAC # Left flank : CCGCGGATGTGCTGCACCGCGAACTTCAGGGCACGTTCAGCGTCGATGCCTTGGCCGTAGTCCGGCGCGCTCGTCATTTGTCCCGCTTCCGCCATCACAACTGCTGGAGATACAGCTTAGGTATTCCAGGCGTTCGTCACGAGAAGCTGCCGTTCAGCTGCCGGCCGCAGTTCTTCGTCGCCCCGAAGGACAACCACCGCCAGGACGCAGTCGACCCTGTGCGATGCGCACCCGGCGAGCGTAGTAACGGCGAGACCGAGTCTGGGTTGCGGCTCTTGGTGTACCTGCCACACTCACCTCACCGCGAAGACCTCGCGCTCTAACGGCTATGCGGATTCACATCGCCGATCCCGTGGTGCTTACCGACCACTTCGGAACCGGAAGCACACACGCGACACGCGGACCAGACCGAAGCCAGATGCCCGAATCAACCGGAGTCATCACCTCCAGCGCTCTCGCTCTACGAAGCGCACTAGGCTGTTTGTACTGCTCAGACAGGG # Right flank : GGCTGTGTCAGTGGCCGATCTTATGGTGTCGGTTACAGGGAGGTTGGTGGTTCGGCGGTCAGGAGGTCAGGTGTCAGAGCGTGGGTTGTTCGCCCATAGTCGTAGTCCGCGGTCGGGGTGCCGGCATCGGCTCGAGGATCATCTGCGTGGCTCGGCTGCTTTGGCCAGGGTTTTCGCCGAGCGTTTCGGTGCTGGGGATGTGGCCGAGTACCTGGCCTTGGTTCATGACGTGGGGAAGGGTTGTTGTGCCTGGCAGGATCGCTTGATCTTTCATGCTGAGCCGACGGGTAAGCCGGTGGGCATCCCGCATAAGGAAGCCGGCACGGTGCTTGCTGCGCGGACGGTGGGGCGTCAGCTCGCTGCTGTGGTGCAGGGGCATCATGGAGGGCTGCCGGATCAGAAAAAGATCAAGGATGTTCTGGCCGAGCTCCGGGGGACCGGTGTGGACGCGGACCGTGCTCGGGAGGCGACCGAGGCTGTGGCCCGGGTGGTGCCGGAGA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.36, 5:-1.5, 6:0.25, 7:-0.08, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCGGTCGTCCTCCCGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TGGCGGTCGCCCTCCGGGGCGACCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 46671-46132 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGZ01000014.1 Streptomyces sp. rh34 scaffold14.1.size56867, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 46670 36 78.4 34 ......A..A-...T..A.G..A.......C...... ACCTAGGCGCGCACCGTGGCGTAGGAGGTCGAAG 46600 37 91.9 37 ................G..G............A.... GATCCGCCGTAGGCGAGATGCGGGTAGTAGCGCGCGA 46526 37 86.5 35 ............T...A..G..A........G..... ATCGAGCCGTACGGGCCTGACCACGTGTACGGGGA 46454 36 86.5 34 ..........T...-G...G..A.............. GTCGCCCATCTCCGCGAACTGCGGGGTGGCCAGT 46384 37 100.0 35 ..................................... TTCGCCGGGTCGAAGCCCTTCGTCCACGGGAGGGT 46312 37 91.9 35 ...........T.......G...G............. CCTTACCCCAGCCACCTATGAGGTTCAGGTTCAGA 46240 37 83.8 34 ....T..........GAA.G..A.............. CTGGTCCTGCACCGCGAGGGCGACAGCGAGCCGA 46169 37 83.8 0 ..............TTG..G..A..C........... | A [46142] ========== ====== ====== ====== ===================================== ===================================== ================== 8 37 87.8 35 GTGGCGGTCGCCCTCCCGGACGGCCGAGGATCGCAAC # Left flank : ACTTCGGGTTGCGATCCTTGGCCACCCCAGAGGGCGACCGCCACCGGCGACCGGCCGGCTCGGGCTGCTGCTGATGGTGCTGTTGCGATCCTGGGTCGCCCCGAAGGGCGACCGCCACCCCGCCGCGCGAGAGGGGCGTCGCGTGGTCGAGGGTGTTGCGATCCTCGGTCGCCCCGAAGGGCGACCGCCACTCCGCCTGCCGTGGACGTTCCGCGGCTCGGACCTGGAGTTGCGATCCTCGGTCGCCCCGAAGGGCGACCGCCACCCTGTCTGACCAGTAAAAAAAGCCTAGCGCTCTTCATAGAGGGAGCGCACTGGAGGTGATGATTCAGGCGGATTCGGGCATCTGGCTTCGGTGCGGTCCGCGTGTGTGCTTCCGGTTCCGAAGCGGACGGGAAGTAACCCGCAATCGTGGACGTGGGTGACCCGCACGCTCGTCAGAGTACGCGTCTCCGCGGTGAGGTGAGTCTGGCCGATACACAGGTCCAGGAAATAGCTGA # Right flank : TGGACGGGCCAGCCGCAGTCGAAACACTTCACCTGGTGGCCGGCCCGCTTCGGTGTCGACGTGGCGGTCGCCTTCCAGGGCGACCGCCACCGGCGACCGGCCGGCTCGGGCTGCTGCTGATGGTGCTGTTGCGATCCTGGGTCGCCCCGAAGGGCGACCGCCACCTGTTCGCGTCATTCGACCGCGCCTCGTCTTCCTGGAGTTGCGATCCTCGGTCGCCCTGAAGGGCGACCGCCACGGCACGGCTCAGGGCGGCGGGGTCGATGGTGGCGAGGTTGTGATCTTCGGTCGTTTTGGAGGACGAGCGCCATGTCGTAGACCCGGCGCGTGAGGGTGCCCGGCTTGGGTTGCGATCCTCGGCCGCCCCCGGAGGGCGACCGCCACGCCCACGGTCGCCGGTCCTAACCCAGCCTTCCGGCAGGTTGCGATCCCCGGCCGCCCTGGAAGGCGACCGCCACAGCGATATCTGCTGCTGCTCCTGCCGGTACTGACAGCTGTGA # Questionable array : NO Score: 3.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCCGGACGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGACGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 46906-48198 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGZ01000014.1 Streptomyces sp. rh34 scaffold14.1.size56867, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================== ================== 46906 37 100.0 37 ..................................... TCCAGGTCCGAGCCGCGGAACGTCCACGGCAGGCGGA 46980 37 100.0 36 ..................................... ACCCTCGACCACGCGACGCCCCTCTCGCGCGGCGGG 47053 37 97.3 37 .........................C........... AGCACCATCAGCAGCAGCCCGAGCCGGCCGGTCGCCG 47127 37 86.5 35 ..............CT....T.G..A........... CCGAAGTGGGGTGCACTCGGCGAGCTGGACACCCT 47199 37 86.5 98 ........T.....C..........A.A..C...... CGGCACGGTGACCGCCACGTTGCGATCCTCGGTCGCTCCGGAGGGCGACCACCACTGCGCTACATCGGCACCGAGGCGCTCGATCCTGGGATGGGGCT 47334 37 86.5 36 ............T.C.AA..T................ GTCGGCTGGTGCCACCGGCTGATCGAGCGAGTCAAA 47407 36 81.1 37 ........T.....C.AC...-.......G.T..... TCCTGCGCGAGCAGAACCCGGGCGGCGTCGTCGGCGG 47480 37 94.6 35 .............C.......A............... TTCCGTACGGGTTGCGGTGGTGCGGGTGGTGGCCC 47552 37 91.9 106 ..........T...C.......G.............. ACCGGCCACTCGGCCGCGTCGACCTGGACGTACGCCGTGGCGGTCGCCCTCGGCGACCGAGAATCGCAACATCTACTGCCCGTTCTCGGCGTTCGGTGACGGCCTG 47695 36 89.2 69 ..........-...C......AG.............. TCCCCCTGCGACCGAGTCCCCGAGGATCGCAATCCGGGGACGGTCTTGCCGTCGGTCCAGTCGGTCGTG A,A [47709,47712] 47802 37 83.8 35 ..............C.C..A.....A.AA........ CTGTCCCGCCTCGACCGCTTCGACGCCGGGAAGCG 47874 37 97.3 35 .............G....................... CGGGGTTCGGGTGTGGCCGCCTGTGGTGGGGCAGC 47946 36 89.2 35 .....A....-...........G.............T TTGTACGCGACGACGAGGGCGGACCCGAGCGCAAC 48017 37 81.1 35 .........A..T.C.AA....G....A......... GGTCTTGGCACACAGCTCAACGACCGCAAGTGCGT 48089 37 78.4 36 .C.....C..T.T.C.....T.G.............A GACATCAAGCACAAGGTGCTCCCGGCGAGCGACAAG 48162 37 78.4 0 ..........T.T.C.CA....G......GG...... | ========== ====== ====== ====== ===================================== ========================================================================================================== ================== 16 37 88.9 47 GTGGCGGTCGCCCTTCGGGGCGACCGAGGATCGCAAC # Left flank : GGAGATGGGCGACGTTGCGATCCTCGGTCGCCCGCAGGACGACCGCCACTCCCCGTACACGTGGTCAGGCCCGTACGGCTCGATGTTGCCATCCTCGGTCGCCCTGGAAGGCGACCGCCACTCGCGCGCTACTACCCGCATCTCGCCTACGGCGGATCGTTGTGATCCTCGGCCGCCCCGGAGGGCGACCGCCACCTTCGACCTCCTACGCCACGGTGCGCGCCTAGGTGTTGCGGTCCTCGGTCGCCTGGAAGGTGATCGCCACTCAGCTATTTCCTGGACCTGTGTATCGGCCAGACTCACCTCACCGCGGAGACGCGTACTCTGACGAGCGTGCGGGTCACCCACGTCCACGATTGCGGGTTACTTCCCGTCCGCTTCGGAACCGGAAGCACACACGCGGACCGCACCGAAGCCAGATGCCCGAATCCGCCTGAATCATCACCTCCAGTGCGCTCCCTCTATGAAGAGCGCTAGGCTTTTTTTACTGGTCAGACAGG # Right flank : CATGCTGCTGGCTCGCAGGCCGGTAATGCCTAGTGGCGGTCGCCCGGAGGCCGCCCGCCACCAGAGGGGCGCTCTTATTGGTCCCGGTCGAGCAAGGACGTTGCGATCCTCGGCCGCCCAAGAGGGCGACCGCCACGCTGGCGGGCGGTGGTGCGCGGGCACGGCCTGAGTAGGGCTGCGTTCCTCGGCCGTCCCGAAGGGCGACCGCCGCGACGCGGCCGCAAGCCCGGACCGACCCGGGTGATGATGTTGCGATCCTCGGTCGTCCCGGAGGGCGACCGCCACCGGGCGGGGCTCCGTAGCAGCACACCTCGTGAGGGTTGCGATCCGCAGTCGTCTTGAAGGGTAACCGCCATACGGAGCCAAGGGCGCTCCGGGCATCGCGACATGTTCGTTGCGATCCAGAGTCGCCGCGAAAGGTGACCGCCGCACCGGAGTCAGCCAGCCGGCCTCGACGCAGTAGTCGTTGCGATCCACGGTCGCCATTAGGCGACCGCCAC # Questionable array : NO Score: 4.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.58, 5:0, 6:0.25, 7:-0.70, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTTCGGGGCGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.00,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 50377-48297 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGZ01000014.1 Streptomyces sp. rh34 scaffold14.1.size56867, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 50376 37 91.9 34 ............T...A.....A.............. CCCGATGGGGAGGACCAGGGTCAATAACTCCACC 50305 36 89.2 36 ...........A.......-........C.......A AGTTCCGGCCCGTACTCCAGGTAGCCCAGCGGTAGT 50233 37 94.6 35 ..............T..A................... GAGAAAGTCCCGGGCCAGAAGTACGCACGGGCCCG 50161 37 94.6 46 ....................T.A.............. TACCCGCACGCGTACCGGTCGGTGGTGTGGAAGTGGTGGCGGTCGC 50078 37 100.0 36 ..................................... ACGGTCCACGGCCGCACCCAGGACGAGTGCCAGCAG 50005 37 97.3 35 ...............T..................... GCGGAGTGGCTACGCGGCTGCGCGACCCTCCTGGT 49933 37 97.3 35 ............T........................ CTCCAGCGGATGGAACGCTGGCAGGCAGGTCTGGC 49861 37 89.2 36 ..............T....A..A.......C...... TCCACGATGGTCCCCCGCGCGCCGCGTGAGGCGACT 49788 37 83.8 37 ............G.T....A.AA...G.......... TGTCCCCGGCGGCCGCCGACCGGTTGACCGCCGACGG 49714 37 89.2 36 ..............T....A.AA.............. GTCAACCATATGGACCACAAGGCCAAGCGCGACAAG 49641 37 97.3 35 .....A............................... GTCCGCTGGGCGGCCGACGGGACCGACGGCGAGTC T [49627] 49568 37 97.3 36 ................C.................... GATGAGCTGGCGCTGAAACTCCGCGAGGAAGCGGTG 49495 35 89.2 35 .................C......T.--......... GCTAGGGCCGTGTGCTCGACGGCAGCTCGCGGGCT 49425 35 86.5 37 ....A.................C.....--..T.... TCCATTGGCTTGCTGCACAGTTCGGACAGGTCCCTGG 49353 37 100.0 36 ..................................... ACGACCAGCTCGCGCTGCGCGGGCGACATGGTCGAC T [49339] 49279 36 91.9 38 ..........T...........-.....C........ GTGCGCAGCACCGCGCCGGACAGGTCAACAAGCCACGG 49205 37 91.9 36 ...................A..A..........G... GGCGGACCGGACGAGGGCGCCCAGTCGAAAGTGCCA 49132 37 89.2 35 ...........G..T.AA................... TCCGGCGTGCGGAGCTGCATCCGGCGGTCCGCCTT 49060 37 97.3 35 ....................T................ GCCGTTCACCGCTCCCTCACCGTCGAGGAGCGCGA 48988 37 91.9 35 ...............G...A..A.............. TTGGTCCGTGAGAGCGGATACCGGGATACCCAGCA 48916 37 97.3 37 ......................A.............. GCCCACGCCCTGGCCGTCACGGTCTCGTGCAGCTGCC 48842 37 94.6 35 .............C............G.......... TTCGCCGGGTCGAAGCCCTTCGTCCACGGGGAGGC 48770 37 91.9 36 ....T......T....C.................... AGCCCGACCGGCGTCACGGCCAGCACCCGGTGGCCT 48697 35 81.1 35 ............-.AAT..-..A...T.......... GACTACTGCGTCGAGGCCGGCTGGCTGACTCCGGT 48627 37 75.7 37 .C.......A..T.T..C....A.TCT.......... GAACATGTCGCGATGCCCGGAGCGCCCTTGGCTCCGT 48553 37 73.0 34 A.......TA....T.AA.A..A.T.C.......... CCTCACGAGGTGTGCTGCTACGGAGCCCCGCCCG 48482 37 94.6 37 ...................A..A.............. ATCATCACCCGGGTCGGTCCGGGCTTGCGGCCGCGTC 48408 37 86.5 38 .C............T....A..........A....G. CCTACTCAGGCCGTGCCCGCGCACCACCGCCCGCCAGC 48333 37 94.6 0 ...............TT.................... | ========== ====== ====== ====== ===================================== ============================================== ================== 29 37 91.3 36 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : CCGAACCGGCTCCGCGGCCGACTGCACCCGCCGCACCGATGCGGCGCGCGGATCTGTCGGAGGGCTACCGCGAGGCTCTCGCCGCCCACCGCGCCGCCTGGAACACGAGCCGGCAGCACACCCGCCTCGAGATCCAGGAGGCCGCCGAGCGGCAGCTCCGCGAACGAACGGCTTCGGGACCCTGAGGAGCACTTCGCCGACGGCCGCTGGCCCTGAGGAGCGAGCTCCACGCCAAAGCAGCCGCCCAGCGGGCCCGGCCGAGCGATGGTCCCCGGGCGCGGGGGCCCTGAAAAGGTATGGCCGCCAAACGCGCTGGCCTGACCAGCATCACCTCGGCGGCGGCCGCGCCGCAGCGGCTGCTGGACTGTACGGCATGAACCGGACCGACGGCGCAGGTCCCGGCTCTACGAGGTTCCTGAGAAACCTCAAGGGCAGCCCGTTCTCCACCAGGTAGCAATCCGCGTTCCGCAGCCGCTCTCCGAGGCACCTGGCACGCCTGA # Right flank : GTCCTTGCTCGACCGGGACCAATAAGAGCGCCCCTCTGGTGGCGGGCGGCCTCCGGGCGACCGCCACTAGGCATTACCGGCCTGCGAGCCAGCAGCATGTTGCGCCCCTCGGCCGCCTGGGAAGACGACCGCCACCTTGTCGCTCGCCGGGAGCACCTTGTGCTTGATGTCTTTGCGATCCTCGGCCACCCCGGAAGACGGCCGCCGCACGCACTTGCGGTCGTTGAGCTGTGTGCCAAGACCGTTGCGATCTTCGGCCGCCTTGGAAGGTGACCGCCACGTTGCGCTCGGGTCCGCCCTCGTCGTCGCGTACAAATTGCGATCCTCGGCCGCCCCGAAGGCGACTGCCACGCTGCCCCACCACAGGCGGCCACACCCGAACCCCGGTTGCGATCCTCGGTCGCCCCGACGGGCGACCGCCACCGCTTCCCGGCGTCGAAGCGGTCGAGGCGGGACAGGTTGCGATTTTTGGTCGTCCGGGAGGGCGACCGCCACCACGA # Questionable array : NO Score: 4.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.11, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-18.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [44-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 54411-52993 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTGZ01000014.1 Streptomyces sp. rh34 scaffold14.1.size56867, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 54410 37 97.3 36 .....................C............... GGCGTAGCGGCCAAGACGGTGTCGCGGGCCCTCGGG 54337 37 100.0 37 ..................................... TCGTCCACGCGGGCGAGTCCGACGTTCGGAGCCAGGC 54263 37 89.2 36 ...............GCA.C................. ACCAGGTCGCCGGACCCGGTGAGCGCCTTGACCAGC 54190 37 89.2 34 ...............GAA.......A........... TTCAAGTCCACCGCGGGTGAGGTGCTGTCGAAGT 54119 37 94.6 35 ...............G.A................... CCGGTCCATCCGGCGGGGTCGACACAGGCCAGCTC 54047 37 89.2 37 ...............GAA.....T............. GTCGTACCGCCCATCGTTCGGGGCTTCAGGCTGGCAA 53973 37 91.9 36 ......................C......GC...... ATGCGCATGGTGCGCGAGGCGCTGCCCGGCGCGGAG 53900 37 97.3 37 ..............T...................... CCGATCGGCACGATCTCGACACGGGAGGACGCGTGAG G [53884] 53825 37 91.9 35 ...........A........T.T.............. GACGAGCTGGAAGAGATCGCCCGCAAGGCGCTGTC 53753 37 91.9 36 ...............GAC................... CACAAGAGCGCCATGCTTCTGGTTTCGGCTTGCCCG 53680 37 91.9 33 ............T.G...................G.. GCCAGCAGTACGGCAGCCGGGGGCGACACCGAC 53609 37 89.2 35 ..............T....A..A.....A........ CGCGAGGCGCCGAGGCAATGTTGCAGCAGGCACAG 53537 37 94.6 35 .......C.........A................... TGGTACTTCGTTCCGCCCTGGTGCAGCGGCAGGTG 53465 37 91.9 37 ...............GAA................... GTCGTACCGCCCATCGTTCGGGGCTTCAGGCTGGCAA 53391 37 97.3 35 ....................T................ ACGAGGTGGTTACCGGGATTCGTCACCACCTGGCT 53318 36 89.2 35 ..........TT........-.A.............. CTGTGCTCGTACTCCGCACGGTCTACTCGGACGAT 53247 37 94.6 36 ..............T.C.................... CCCGCGTACGACGGCGTCTGGGACTACACCGTGCAG 53174 37 94.6 35 ................C............G....... TTGGTCTCGGTGTCACCGGATCAGCGGACGACGCC 53102 37 97.3 36 ..........G.......................... TCGTCCACGCGGGCGAGTCCGACGTTCGGAGCGAGG 53029 37 89.2 0 ........T.T...T....T................. | ========== ====== ====== ====== ===================================== ===================================== ================== 20 37 93.1 36 GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Left flank : ACGCCACCTGGACGGTGATTGCGTGATTGGCGAGCTGAGCGGCGTCGACGCGGACACCAGCCGCCGGGGCACCAAGCTGCACTGGAGCGCCCCGAAGCTCATCGCGGCGGCCAACCGGCGGTGTCGGAGGCCAACGTTCGCTTCCTGCGCGTGATTTCCGCGCCGCTGGTCGACTTCACGGCCCACGCCCCGCTCCGAGCCACGTTCGGAGCGCTGGCCGTGATGGCGTCGGAGGTCTGGTGGAACCAGTTGAAGCCGAAGTTGGTGTTGTAGCCTCCGGCGATCAGGTCCTTGCCCGCTGGACCGGAACCGGAGACTCCGACCCCTTGCCGCAAAGCCCCCCTCGGATGTGGCTGGAACCTCCAGACCGCTTCGGAACCGGAAGCACACACGCGACACGCGGACCACACCGAAGCCAGATGCCCGAATCCACCAGAACTGTCACCTCCAGCAGGCTCCCTCTACGAAGGGCGCTACGCTCTTTGCACTGTTCAGACAGG # Right flank : CTGTGGTCCGGGCGCGACGTCGCCGCCTGGGGCGTGGCGGTGGCCCCTCGCATCGGTGACCTCGGCCTCGTCGTAGTAGGACATCCAGCTGCCTCCGCTGAGCGTGCACCGGGCACCCTGCTCCGGGCGGTGACCGCTTCGGCGAGGAGGACTTCCTGACGGGTCGGACAGCCGTCGTCGTCCTCGTCGACCCAGTGCTTGAAAGCATCGCGCTCATACCCGGTGCGCTGCTCCTCGGCGACGGGGATCTTCCTTATGGCGTCCGCGAGGGCCAGGCCGCCCTCGTCCGGGGCTCCGCCGGGCGCGCCGGACGGTGCGGTGGTGCCGTTGGCGGAGGGCTTGGGGTCGTCGGCCTCCACCGGCTCGGTGGAGCAGGCGGTCAGGGCGGCGGCGGTGAGCAGGGCGGCGGACAGGAAGCCGAGACGGCGCAGCGACACGAGGGCACCGCAGGATTCCGGCAAGCCATTCACACGCCGGCTGGTGCTGCGCTGCATCGAAGG # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.11, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-18.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [23-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //