Array 1 26578-26972 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIV01000214.1 Streptomyces sp. SID4950 SID4950.c217, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26578 29 96.6 32 ............................T CGAGGGGCGCGTACAGGCTGATCCCGCCGTCC 26639 29 100.0 32 ............................. TCGCCGCATCCGCGGGGGGCCAGCGCGAAGTG 26700 29 100.0 32 ............................. TGTTGGCGCCGGTGCCAGGTGAAGCCGACTTG 26761 29 100.0 32 ............................. GTCCTCGCCGCGGTCTCTTGAGGGCGGCCGTA 26822 29 100.0 32 ............................. CGCCGTCCAGACCGAGACCGACGACCAGGGCG 26883 29 96.6 32 ..........A.................. GGCGTGAGCAAGCCGCAGGCCGCGGGCACCGC 26944 28 96.6 0 ............-................ | T [26969] ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 CTGCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : GATCCCCGCCCGATGAACCGTTGGTCATCCAGGCGGTGTTCCTTCTGGCGCTCGTGCCCTTCGTGCTTGCGCTCGCCGGGGCGGCCGCTCAGTCCAAGCCCCTGTTCGCTGTCCTGCTCAGCCTCACCGCGGTGCGTTTCGCCCTCACGGGCCTCTACGAGGCAGGTCTCGGGAACGCGTTCCAGATCGCCGCGGGCTGGACCGGTCTCGGCATCGGAGCCTTCGCGCTCTACGGCGGTCTCGCTCTTCTGGTCGAGGACGGCAAGCAGCGCACCGTGCTGCCGCTCTTCCGCCGCGGGAAGGCCCGCGAGTCGATCGAGGGTGATCTGCGCGCACAGCTCACTGAGGCGCAGCAGGAGGCCGGGGTCCGTCACCAGCTGTGACGGCGCGCTGCCCGTCGGAGGGAGCCGTCCGGGAAGCGATGTGTGTCCCTTTTGTCGGAATCTCTGCAAGTGGCAGAAACAAGGCCGCTGCACCGGTAAACCCGCTGGTCACGGAGT # Right flank : CGCCTGGTACATGGCGGTAGGTCGCAGTGGGACATATCGGGATTTAATTTGTACCTCACCCTGCGGCTCGGATGCACGCCGGGAAGGGCGCCTGGCAGGTGAAATACCTGTTCAGGCGCCCTTCTTGGCGTCTAGAAGAAGCCCAGCTTCTTAGGCGAGTACGACACCAGAAGATTCTTCGTCTGCTGGTAGTGCTCCAGCATCATCTTGTGGTTCTCCCGCCCGATCCCCGACTGCTTGTACCCTCCGAACGCCGCGTGCGCCGGGTACGCGTGGTAGCAGTTCGTCCAGACGCGACCCGCCTGGATCGAACGGCCCGCCCGGTACGCCGTGTTCATGTCCCGGGTCCACACCCCCGCGCCGAGACCGTACAGCGTGTCGTTGGCGAGCTTGATCGCGTCGTCGAAGTCGTCGAAGGACGTCACCGAGACGACCGGCCCGAAGATCTCCTCCTGGAAGATCCGCATCCGGTTGTCGCCCTCGAAGATGGTCGGCTGGAC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 271-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIV01000378.1 Streptomyces sp. SID4950 SID4950.c390, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 270 29 100.0 32 ............................. GGGTCGGTGCTGCTGTACCAGGGCGGGGTCCT 209 29 96.6 32 ............................T ACGGGCGCCCGTACCGGGTGAGCAGGATCGTC 148 29 100.0 32 ............................. GCGCGAGGCGGCGGTCACCTACGGCCTGCTCA 87 29 96.6 32 ..............T.............. TGGTCCATGATGTCGCCCTCGATGCGGGCGGC 26 26 86.2 0 ..............C...........--- | ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.9 32 CCGCTCCCCGCGCGAGCGGGGATGAGCCC # Left flank : TTCCTCGGCAGCCCCTCCGCCCGCATTCGCGACGCCCTGTGGGACGAAGTTTGCGAGTACGCGGGCAACGGCCGCGCCCTGCTCGCCTACGCCACCGACTCCGAACAGGGCTATGCCTTCCGCACCCACGACCACAAGTGGCACCCCGTCGACCACGAGGGACTCACCCTCATCTTCCGTCCGTCCGACCGCGCGGCGCCCCCGCCCTCGTCACCCAGGCCGGGCTGGAGCAAAGCGTCGAAGCGGCGCCGCTTCGGGGGTGGGACGTAGCCCGCCGACGACGGCGTCCGCCCGAGACAGCCACACCGGCCTCGACGGTCGCCGACAACACGCCGAACCGGACGAGTTGGGCCCGGACCGCCCGGCAGTCTTCCGAGACCGCAGGAGAACGAAGGCTGACCGAGGCAGCGCAGGCGCTCGACGATTTGCCCCCGATGCACCTTTCTCTCATCCTTGCTGAATCCGGCACCGCTCCATGACAAAAGAACAGCTCAGGAAGA # Right flank : G # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5683-5411 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIV01000358.1 Streptomyces sp. SID4950 SID4950.c370, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 5682 30 96.7 29 ............................A. GCGCCGGACGGCCCGGCCTGGACCGTCGC 5623 30 100.0 31 .............................. AGGGCGAGCCGTTCCGTGAGGCCTTCGACGG 5562 30 100.0 31 .............................. GGTCCAAGAAGGGCCCTGACGGCGGCTCAGG 5501 30 100.0 31 .............................. AGCACCAGGCGGTGCACGCGATCTGCCGCAT 5440 30 96.7 0 ............................T. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 98.7 31 GTGGTCCCCGCGCCCGCGGGGGTGGTCCCG # Left flank : TGGCCGGCGGACGCAACTACGGGGACGAGCCCATCTGGTGACCGTCATCGTGCTCACCAACTGCCCCGCCGGACTACGCGGCTTCCTCACCCGCTGGCTCCTGGAGATCTCCCCCGGAGTATTCCTGGGCTCTCCGTCCGCCCGGGTACGCGACCTCCTCTGGAACGAGGTCCGCACCTACTCCGGCCAGGGCCGCGCCCTGCTCGCTCACCAGACGAACAACGAACAGGGCTTCGCCTTCCAAACCCACGAACACGCCTGGAAACCGACCGACCATGAAGGACTAACCCTCCTCCACCGGCCCGCGCCACGCTCCCCTTCGAAAACCCCACGGCCTCACCCCCTCTCTCAGGCTGGAGCAAAGCGGCGAAACGACGCCGGTTCGGCAAAGGCTGACAGCAACAGAAACCAACCAAAGGTTCCAAATGCACCATTCTCCCGCTTCCCTGGAAGTAGGTAAATTCACCGAGGGCACCCGCTAGAAGCCCTGGTCAAGTCCT # Right flank : GCCTGTCCGGTCCTCGCCCCGCACCCAAGATCCAGGGCGAGGACCGGACAGGCCACCAGGCCGGACGCACCACCCACACCACCCGATGCGCCCCGCCGACGCGAGCACGACGTCTGCGGGGCGGGCGCAGTGCTGTCCACCCGACGGCTGGAGGCGATCACTCGTGCTCAACCCGCCGCCCGACGCCGTCAGGCATGGAGGACCTCATCGCGGAGAAGGGCGCGCTTGAGCAGGCCCTCCAGTGCGTGCTGTTCGTCCTGCGTCATGCCGGCGAACAGGGGTTCCTTGGCCAGGGCCTTCAGTAGCTGCTCCCGCAGCTCGATGCCCTCCGGGGTCAGGACAAGCTGTTTGGCCCGGCGGTCGGTGGGATGGGGGCGGCGCTCTATCAGCCGCAGGCTCTCCAGCTTGTCGATCACGACGGTGGCATTGGACGGTTCGCAGCTCATCCGCCCGGCCAGCTCGCGCATGGTCATGGGACCGGTCATCTCGCGCAGGGCCGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCCCGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 33-428 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIV01000129.1 Streptomyces sp. SID4950 SID4950.c132, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 33 28 100.0 33 ............................ GTGCACCAGCTCGTCGGTGCAGCGGCGCAGCGT 94 28 100.0 33 ............................ GCCACGCAGTCCTGCCGACAGCCTTCTCGACCA 155 28 96.4 33 ..A......................... GTGCTCCCCGGCCCGCTCCCGCATGACGCGAAC 216 28 100.0 33 ............................ GACGACTCGCAGCCCGAACTCCGTCGCCTGCTC 277 28 67.9 35 ...GA.........C....G..G.GGTT CCCAAAGACGCCGCCGACGTCCGCCAGCACATCGA 340 28 67.9 33 ..GGT.C......CC....G....TT.. CGGCACGCGGGGCCCGTCGTCGTCGGGCTCTTC 401 28 67.9 0 ..GGT.C......CC.....T...TT.. | ========== ====== ====== ====== ============================ =================================== ================== 7 28 85.7 34 GTCCGCTCCGCGCAGGCGGAGGTGAACC # Left flank : ACCTGCGCGCCGATCTCCGGGTACTCGGAGAAG # Right flank : CCTCGGGCTGGTCCTTGGGCCTGAGCCGCATGACAAGGCCCTGACCGAAACAGGGAGGCTTCCCAGCCGTGCTGGAAGACAGCGAGGAGAATGCCGTGGCACAGGTTTCCGAGGAAACGCCCGTCGAAACAGTGACTCGCTGTGATCGCCACTGGCCGCCACACAAGCAGCAGCATCCCGTACTCGATGCCCCTCTTCGCACCTCACCTGGGGAGAATCTGGGGAGTATGAGTGTCGCTGGGGAGCGCGTGGGGAGAAGCGATTGCATAACACCGGACGATCCTGAAAGACACAGAAAGACGCGTCTGCGCAGGTCAGAATCACTAATGTTCGCATCGACGCAGGTCAGCGCCCCCAGGTAGACAACCTCAGGAAGATCTCGTCGTGGGCGGCCATTCTCTTCGCCCCCACGCTGGTCGGCACGATCTACGGGATGAACTTCGATCGGATGCCGGAGTTGCACTGGTCCTTCGGGTACCCGTTCGCGATCGTGCTGATGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAGGCGGAGGTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [18.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 321-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIV01000421.1 Streptomyces sp. SID4950 SID4950.c445, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 320 28 100.0 33 ............................ GATCCGCGAGCTGGGCGGGTCGGTCCCCGAGCC 259 28 100.0 33 ............................ GGCGTGGACCGGGGCCGCAGCCGCCTACCGGGA 198 28 100.0 33 ............................ GGCGCTGCACGAGATCGCGCTGACGCTGCTGGC 137 28 100.0 33 ............................ GGACGCGCAGATCGCCGCCGAACGCGAGGAGAA 76 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTCCGCTCCGCGCAGGCGGAGGTGAACC # Left flank : CCCCGCATCGTCCGCGACCTCCAGACCCTCCTCGCCCCCGACACCCCCCGGCCCGACCCCGACGAGACCCTCGACGAACAACTCGTCGACCTCTGGGACCCCGTCACCGGCCCTCTCCCCAGCGGCACCAACCACGCCTGACCCCCGACAGGAGCATCCGGCCCGTGCCCGCCATGACCGTCATCTCCGCCACCGCCGTCCCCGACCATCTGCGCGGCGCCCTCACCCGCTGGCTCCTCGAAGTCACCCCCACCCTGTACATCGGCACCATCTCAGCCCGCGTCCGCACCGAACTCTGGAACAACCTCACCACCTGCCTCACCCAAGGAAGCGCCGTCCTGGCCTACCCCGCAGCCAACGAACAGGGCTTTACCCTCCACACAGCCGGCCCCCAACGCCGCGACCCCCTCGACTTCGACGGCCTCACCCTCATCGCCTTCCAACGCCTCCCCACAAGTCAAGAAACTGCAAAGCCAACATAGAACCGCAGGCCACGAAGG # Right flank : CGTCATGCTGCTCCGCACCCGCGAGCGGCTCGAGGTCCGCTCCGCGCAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAGGCGGAGGTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 10246-10578 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIV01000421.1 Streptomyces sp. SID4950 SID4950.c445, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10246 28 100.0 33 ............................ CTCCCCGGCGCCGCTGCCGCGCCGGGTGACGTC 10307 28 100.0 33 ............................ GGCCCAGCGCAGACCCCATACGAGGAACACGAC 10368 28 100.0 33 ............................ GCACGGGCGAGGTGGTGGGGGTGAACGCGGTGT 10429 28 100.0 33 ............................ GTGGCGACGGGCGCGGCGGCGGGGTCAGGGGGC 10490 28 100.0 33 ............................ GAACTGGCCGGTGGCTGCGCCCGCCCCGTTGTC 10551 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 GTCCGCTCCGCGCAGGCGGAGGTGAACC # Left flank : GCGCCTTGAACGCATCCGGCACCTGCGCCTGGAACGGCGGCGTGATCTTCCCCAGATCATGCAGACCCGCCCACCACGCCAGCACCCTTCGCGCATCGCCCACACCCAGCCCAAGCTCCGCGGCGACCCGCTCCCGTAACCGAGGATGCAGCAGGACATCCCACAGCGCACCGAACACCGCCGCCACATCCAGCAGATGACAGATCAAGGGGTATGGATACGGCAGCCCACGTTCCTTTCCCCACACCCGCACATCCACCTGGTCCGGGACCACCACATCACTCATGCCGAGAACTTCTAGCAGCAGCCACTGACAACACGGCCCCACCTGCGGACACCTCCACCGCCGGTCGCCATGCCGGAGATAGTCTGACTTCTGCCACCGCCGTGGCACGCCTCTGAGATGCCACAATCTGATCAAGGCCAGGGAGACTCTGATGTGCCGCAACAGCGTTGGTAAAGGAATTGCCAACCCTCTCTGACGCCGCAGGTCAGGAAGG # Right flank : GGCGGCCGTCGGCGCCTGCTGCTGCTCGGCGATGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAGGCGGAGGTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40-494 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIV01000437.1 Streptomyces sp. SID4950 SID4950.c467, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40 28 100.0 33 ............................ GCGGTATCAGTGGGGCGGCAACGGCGACCCGTC 101 28 100.0 33 ............................ GGATCGCCCCGGACGTCACCTGCTCCACCGCGG 162 28 96.4 33 ..................C......... GTTCAGCCCGGCAGTCCCCGGCCTGGAATGGAG 223 28 100.0 33 ............................ GCACCACGGGGGCGCCGCGCACACACCGGGCCC 284 28 100.0 33 ............................ GCCTTGCCCGCTTCGGAACTGGGGATGGTGGTG 345 28 96.4 33 ......................C..... GGACGTCATCCGCGGCTACGTACCCCTCGACAT 406 28 100.0 33 ............................ GTTCCAGATCCACACCATCACCGGCCACGACGG 467 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 8 28 99.1 33 GTCCGCTCCGCGCAGGCGGAGGTGAACC # Left flank : GGTGAACCGGGTCGAACGGCCAGGTGCGGGTGCCGGGGCG # Right flank : GGGGCACCTGCCCGGCGCGATGCCGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAGGCGGAGGTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [15.0-6.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32-303 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIV01000438.1 Streptomyces sp. SID4950 SID4950.c468, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32 28 92.9 33 ....C..............C........ GCAGAGAGGCCCGGCATCCCCGCAGATCGCTGC 93 28 96.4 33 ...................T........ GGAGCTGGCCGCGATCCGTGAGGCCCTCGGCTT 154 28 100.0 33 ............................ GCGGGCCCCTGCGTCATCCGGGGCACCGACCGG 215 28 92.9 33 ...........TT............... GGAGATCGAGTGGGCAAGAGCCCCCATGATTTC 276 28 96.4 0 .........................G.. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 95.7 33 GTCCGCTCCGCGCAGGCGGAGGTGAACC # Left flank : CACTGGCCGCCAGCGAGATCACCTCTGAGACG # Right flank : GTTGTTCATGTACGTGCTCGATGCGCAGGGTTTGCGACTCGTGGATGGCGGTGGATCGTGTCATCCGACCAGGTGGACCATTTCTCGAACTCGCCGTGGGCGTCGACGAAGGTGTTGAGGAGCGCGTCGTGGTTGCCGGCGTCTGCCAGGTAGACGGGGACGGTCTCCTGCTTCGCCGGTGAGGGCGCGGACGTGGCTGTGGTGACGTCGGACAT # Questionable array : NO Score: 3.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAGGCGGAGGTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55249-54916 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIV01000091.1 Streptomyces sp. SID4950 SID4950.c94, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55248 28 96.4 33 ..............A............. CTCACCTCTTAAGAGGTGAGTTTCGGCGAGTGA 55187 28 96.4 33 ..............A............. CAAGCGGATCTGCCGGGCCTGCTCAGAACAGTG 55126 28 100.0 33 ............................ CGACCCGAAGGGCGCACTGAGGAAGGGCAGCAT 55065 28 100.0 33 ............................ CCGCGTCAAGGAAGCGGCTGCCGAGCAGTGGCT 55004 28 100.0 33 ............................ CAGCCAGGGCCGGGTCCGGCATCCGGCGGTGGC 54943 28 82.1 0 ..A.......T..CC..........C.. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 95.8 33 CCGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : ATGAGCCCCAGCTCGGCGCAGACCCCCTCCCCATGACCG # Right flank : CTCGCGGTGGTAGGTGGTGGCCTCATTCGGACCCGCTTCCCACTCCCCGCGCCCGCAGAACGCTCCAGTTCCCTGTGCACCGTTCCAGTGCGGCGCCCCCACAGCGCATCGGCACCGTGAAAACCCCGCGCGGCGCGGGCCCGCCCCGGAGCAGAATCCCCCCCCATGACCGACATGAACGCGTTCCGGGACGCCGTCGCCGCGTGGGCGGCGGGCGGTGCCGGCGAGGTGGTGGCGGGTGGGGCCGGGGCGGGGGAGCTGGCGCGGCTGCTGCCGGTGCGGACCGCGGTGCTCCTTGAGGGGCCGAGCGACGTCGCCGCCGTCGACGCGCTCGCCGCGCGCACCGGGCGCGACCTCGCCGCCGAGGGCGTCTGCGTCCTGTCGATGGGCGGGGCGATGAACATCGGCCGCTACGCCGCCCTCCTCGGCCCGCCCGGCCTCGGGCTGCGCCTCGCCGGGCTCTGCGACGAGCGCGAGCGCGGCTTCTACGACCGCGGCCT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : CCGCTCCCCGCGCGAGCGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 79607-79022 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIV01000185.1 Streptomyces sp. SID4950 SID4950.c188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 79606 29 100.0 32 ............................. GGCTACGACCCCACGGACTGCGACGAACCGAT 79545 29 100.0 32 ............................. TCATCACCTGGAGCATCTAGCCATGCCGTTCC 79484 29 100.0 32 ............................. CAGCTCGTTGGGGGCGATGTGCCAGAAGTGGG 79423 28 96.6 32 .....-....................... GCCTACGAGCAGCGCACCGGAGACCCCGTCGA 79363 29 100.0 32 ............................. GCGTCGATGAGCGTGCGGATCTGCGCGGCGTC 79302 29 100.0 33 ............................. CAGGCCCATGAGGGGCTCCTTTGCTGGTCGGTG 79240 29 96.6 32 ......T...................... GACCGCTACCCCATCGGAACCCCAGTCACCGC 79179 29 100.0 32 ............................. CTGCGCGCGGGTCTCGCCTCGTGGGTGGTGGC 79118 29 100.0 39 ............................. ACCCGCGAGGGCGTCGCCGCGGCCAAGGCCTGGATGTGG 79050 29 93.1 0 ..........T..............C... | ========== ====== ====== ====== ============================= ======================================= ================== 10 29 98.6 33 CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Left flank : ACTCGTCGGCGGGACCATCTCCGCTCGCGCGGGGAGCAGCAGCCCCTCCGGCCGCCCCCCGGGCCGCCCCCGGGGACCATCCCCGCTCGCGCGGGGAGCAGGCCGCCGCGGCCTTCGGGGTCACCCGTGTCTCGGGACCATCCCCGCTCGCGCGGGGAGCAGGTCGTTTCAGGAGGCCGGAATGCCGAAGGGCAGGGAGCAGACGGTCCAGCTAGGCCGGTGGATACCGAAGTCGGGACCATCCCCGCTCGCGCGGGGAGCAGTGCATTCATGGCCAATTGATACACGCGCCAGACGACACGACGCGCTCAATTCCCCGAAGCCGCTCATGCCACGCCACAGAAAGCGGCCCCTGCTGTAGCGTGCCACCTTTGCGCGCCTCCTGAAGACGAACCGAACAGAACAGAACCCCAGGAAAGGCATGCACATCCCTTTTGCCGGAATCTCTGCAAGTGGCAGAAACAGGGCCGCCACACCAGCAAACCCGCTGGTCAAGAAGA # Right flank : GGCCCGCGCTTCGGGAACGGGCCGCTCGCGGTCTGCTCCCCGGCGCCCCGGCACCACGATGAGGGACTCGGACGGTCCCGGGGCAGCCTGACCTGCAAGATCCACCTCGTCGGCGAAGGCGGCTGCCGTCCCATGTCCCTCCTGCTCACGCCGGGACAGTGGGGCGACGCGCCGCGGATGATCGAGGTCTTGGACCGGATCCGAGTTCCGAGGCCACGGGGCGGAAGGCCCCGGACCCGGCCGGACCACGTCAGCGGCGACAAGGCAAACAGCTCTCGCCGAAACCGCCGCTACCTGCGAAGACGCGACATCCGGCACACGATTCCGGAACCGCAGGACCAGCGGTCCAGCCGCCGCACGGGCAGCGACGGGGGCAGGCCCGTCGGCTTCGACCGCGACCGCTACCGGCGACGCAACGAGGTCGAACGGACCGTCAACCGGCTCAAGAACTCTCCCGCGCGGTCCCGACGCGTTACGACAAACCGGGCCTACGTCTTCCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 79844-80292 **** Predicted by CRISPRDetect 2.4 *** >NZ_WWIV01000185.1 Streptomyces sp. SID4950 SID4950.c188, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================= ================== 79844 28 100.0 73 ............................ CGACTTCGGTATCCACCGGCCTAGCTGGACCGTCTGCTCCCTGCCCTTCGGCATTCCGGCCTCCTGAAACGAC 79945 28 100.0 33 ............................ CGAGACACGGGTGACCCCGAAGGCCGCGGCGGC 80006 28 100.0 34 ............................ CCGGGGGCGGCCCGGGGGGCGGCCGGAGGGGCTG 80068 28 96.4 33 ...................A........ CGCCGACGAGTACGCCCAGCCTCTGTCCGAGGT 80129 28 96.4 33 ..............G............. CGCCCGGGTCACGCTGCGGGTGACCGTCTGGCA 80190 28 92.9 48 ...............A....T....... CTTTGACGAGCTGGCCGTGAAGCTCCGCGAGGAGGCCATCCGCCGCTT 80266 27 92.9 0 ............T............-.. | ========== ====== ====== ====== ============================ ========================================================================= ================== 7 28 96.9 42 CTGCTCCCCGCGCGAGCGGGGATGGTCC # Left flank : CCCGCGGGTGCGGGGAGCAGTCGACGGGGTCTCCGGTGCGCTGCTCGTAGGCGGGACCAACCCCGCGGGTGCGGGAGCAGCCCACTTCTGGCACATCGCCCCCAACGAGCTGGGGACCAACCCCGCGGGTGCGGGGAGCAGGGAACGGCATGGCTAGATGCTCCAGGTGATGAGGGACCAACCCCGCGGGTGCGGGGAGCAGATCGGTTCGTCGCAGTCCGTGGGGTCGTAGCCGGGACCAACCCCGCGGGTGCGGGGAGCAGTCTTCTTGACCAGCGGGTTTGCTGGTGTGGCGGCCCTGTTTCTGCCACTTGCAGAGATTCCGGCAAAAGGGATGTGCATGCCTTTCCTGGGGTTCTGTTCTGTTCGGTTCGTCTTCAGGAGGCGCGCAAAGGTGGCACGCTACAGCAGGGGCCGCTTTCTGTGGCGTGGCATGAGCGGCTTCGGGGAATTGAGCGCGTCGTGTCGTCTGGCGCGTGTATCAATTGGCCATGAATGCA # Right flank : CCACAAGGCCGCGGGCCGTGAGGTCGTACGGGCTGTGCGGGTCCTACCGCCCGGTGCCGTCCCGGCGCCCGGTCCGGCCGACGTCGCCTCGGCAGAACTGCCCCCGGCCGCGCCCACCGGTCCGGCGAAGACCAGGGAGACGGCGTGCGACGGCTACCGCCGCGCGCTCGCCGCGCACCAAGAGGCCGCCGCGCTGTCCCTGGTCGCCCAGGGGATCGTGGCAGCGGTAGACGGCAGACCGCCGCGATGCGTGAGCTGTCCCGCAGGGCGTTCCCCGAGACCGACGTCGTCGCCGACGATGCGCTGGCCCCGATCGAGCGGGCCCGCTCCGAGCGCCGCCGCCAGGCCGACGTCTCCCACGCCGCCGCCGTGCACCGGGCCCGGGCGGAACGTGGCGCTGGATACCAGGACGGCAGCCGTGCCACAACACCGTGAGCCGGGGATCACGGCGTGAAAGGCACAGCTGTCATGAAGTCGCTGTCAGGCCGGTCCGCTCACGG # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.49, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGAGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //