Array 1 1663836-1666203 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053706.1 Pseudomonas aeruginosa strain PAC1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1663836 28 100.0 32 ............................ TTCGTGACGGCTCGTCGTTCACCACCAGTAGC 1663896 28 100.0 32 ............................ TACCTCCAGTTGCGGGGCTCGGTAGAGCTCGT 1663956 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 1664016 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 1664076 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 1664136 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 1664196 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 1664256 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 1664316 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 1664376 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 1664436 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 1664496 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 1664556 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 1664616 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 1664676 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 1664736 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 1664796 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 1664856 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 1664916 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 1664976 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 1665036 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 1665096 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 1665156 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 1665216 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 1665276 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 1665336 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 1665396 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 1665456 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 1665516 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 1665576 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 1665636 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 1665696 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 1665756 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 1665816 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 1665876 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 1665936 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 1665996 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 1666056 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 1666116 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 1666176 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 40 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1675656-1674728 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP053706.1 Pseudomonas aeruginosa strain PAC1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1675655 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 1675595 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 1675535 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 1675475 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 1675415 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 1675355 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 1675295 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 1675235 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 1675175 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 1675115 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 1675055 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 1674995 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 1674935 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 1674875 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 1674815 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 1674755 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 97.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //