Array 1 3941259-3942728 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJVC02000001.1 Lelliottia amnigena strain JUb66 Ga0439274_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3941259 28 100.0 32 ............................ AGGCAGCTGCTTCGCACCGGCCAGTCTCCGCC 3941319 28 100.0 32 ............................ CAAGACGATACCGATGACATGATTTACGACGA 3941379 28 100.0 32 ............................ TCGTGGCCCGGCATGGAGTGAAGTTGATCCAT 3941439 28 100.0 33 ............................ GGATGCGATCGCTACGTTTTATGCCCGCCATTA 3941500 28 100.0 32 ............................ AATTGCATTTATACCACCTCCTGACTTAAATC 3941560 28 100.0 32 ............................ GATGGGGATCTGCAGCACAGTCAGTGTTTCAA 3941620 28 100.0 32 ............................ GTGACTTTGGTAATTCGATTAGCGATATGACG 3941680 28 100.0 32 ............................ GATAGAGCCGAACGCCGTTTCATCCATCAGCC 3941740 28 100.0 32 ............................ ATAGCCCGCATTCCCGCGCATGTCGGTGCCAT 3941800 28 100.0 32 ............................ GTCATGCGGCCTCGGTCCTTGCCTGCAGGATG 3941860 28 100.0 32 ............................ CCTTGATAATTGCGATATACCCATGCGCGAGA 3941920 28 100.0 32 ............................ TGAACACCGTATTTATTTGTTATAGATGATAC 3941980 28 100.0 32 ............................ GGACTGGACGGCGAGAAACTGGACGGCGCGGA 3942040 28 100.0 32 ............................ CGAAAGGACTGAAAGAGCTTTCAATGGCAATT 3942100 28 100.0 32 ............................ TTATCTGTGGCAGCGGCGCACTTGCTGCACTG 3942160 28 100.0 32 ............................ ACCCTCTGTGGTCATCTCTGATTTAGTGTGAT 3942220 28 100.0 33 ............................ CTGATAGAGGCAAAGTGCTCCCGCGCTGACCTG 3942281 28 100.0 32 ............................ TTTGGCGGCGCATCAATCATGACACGTTCCAT 3942341 28 100.0 32 ............................ GCAATGAAACTTGCTGCGGTGTACGCCTGTAT 3942401 28 100.0 32 ............................ AGCAAAACCGGGTGATTCTTCAGCCGCTTATC 3942461 28 100.0 32 ............................ GATAGCGTCCATCATGGTTATGCCGTATGCGC 3942521 28 100.0 32 ............................ TTTCATATCAACCGCATGGAAACCATTAAACC 3942581 28 100.0 32 ............................ GTAATATCCGCACCCTCTTCGACAGGGTACTG 3942641 28 100.0 32 ............................ AACGCAGCGAGACGAACCTCAAAGGGGTAAAC 3942701 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCATTAGCGGCATGCTGGTGGCAAAAGGATTACCAGGGTTTATCGCCTATGGTGTGTTGATTGGCGAAGTGGTTGCGCCTGTGCTGATTGTGTTGGGCATTCTGACGCGTCCGGCAGCGCTGGTGCTGGCCTTCACGATGATTGTCGCCTGGCTGATGGTCGGCACCGGCAAAACGTTCGCGCTGGACGCAGTAGGTGCATGGGCGATCGAAAGTCTGGTGTATTTCTTTATCGGCGCGTTAGCCGTGGCGTTTTTAGGTGCAGGGCGTTATGCCTTAGCCAAAGACCCGGCCTGGAAGTAAGGTTTTATCCGGGCGGCGCGAGCTTATGTCGAGATAAAAACCAGCATCTGCAAAAAGGGTTCTTCGGAACCCTTTTTTGTGGGTTCTGTTTAACTCATTGATATTGTTGAGTGGAATGAGTTTCCAGGAAAAAAGGGTTTGCCGCGCTGGAGTCGAGTTTCACTTTAAGTATCAAAAGGAAAGGTGTAGATTGCTTCA # Right flank : ACTGGTGAGTTCTTTCGCGGCAAAGGGCAAAAGGGTGCACTGTCGTGCAGGCAGGAATACCCGCCGAGGCGGGTATTTAGTATTTCAAATTAAAGGGCTACAGTGTAATCAAGGTTGCCGATCTGACTTTCCATTTTCCATCCTCGCGAACAAGGCAATCCGCGACGACATGTTTTTTGTCCTTACCAAATGCAATGTAGATATTCATGCACACCGCATCAAAATCAGACGAGATTACACTCACGTGATCCCAGTCCTCCTCCCAATCCTGGGCTTTGATAAACATATCTGAATCTGGCATATCTTTATCATTGCTGTCGCCCGAATAGAGAGCTTTTATCGCTTCGATGGATTTTTTTGACACGTAAGGGGTAAGAGTGTCGGGATTAAGAAGCGGGGATTTATCCTGCTTGAGGGCGTCTACATACCAGCGATTAAAATTCAATGCGGCAATTTGTGGCGTTACCGCAAGTGGGCTGGCATAAATCGGCGAGCATAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3962246-3963536 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJVC02000001.1 Lelliottia amnigena strain JUb66 Ga0439274_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3962246 28 100.0 33 ............................ TGGTTGAAGCTGAGCAAGGTCTGATGCCTCGCC 3962307 28 100.0 32 ............................ TGCAAACATCGCCATTAACCGCTCTGTTATCT 3962367 28 100.0 32 ............................ TCGCCGGTATCAGCCAGAAAAGAGAGCGTGAC 3962427 28 100.0 32 ............................ AGAATCAAAGGCTTGCATTCCAGCAGCCCATT 3962487 28 100.0 32 ............................ TGGAGAAGTGCACTATGATGTCTCGCCGTTCT 3962547 28 100.0 32 ............................ AGAAGGTACTAACAGGTAAATCATAGAATAGG 3962607 28 100.0 33 ............................ CTGATACGCAAACTTCTCGCGATTATCATATTG 3962668 28 100.0 32 ............................ AGATGCGGCGCCCGGTTCTTTGCGTGGGCATT 3962728 28 96.4 32 ............G............... GCTTTTGCATCCCTCGCGGCAATCATATTCAT 3962788 28 100.0 32 ............................ TGATACGCAAACATCACGTGATTATCATATTG 3962848 28 100.0 32 ............................ GTCTGCGCCCTCCTGCGTCAGCAGGTTATAAC 3962908 28 100.0 32 ............................ AAGGCTTAGATCGAGGCATACCGCCACAAAAA 3962968 28 100.0 32 ............................ TTTGAAGGCGGTGACGCAATATACAGGGCGGG 3963028 28 100.0 33 ............................ ATCGACGTCATATCCAGACGCCCAGACGTTAGT 3963089 28 96.4 32 ............G............... GGGCTGTCGTCGCCGAACTGAGCTCGGGCGAT 3963149 28 96.4 32 ............G............... GTTAACGAACGAGACCGGCAGCGCGACCAGCT 3963209 28 96.4 32 ............G............... GTGCTCGGCAACAATCCCGACTAAATCGACGA 3963269 28 96.4 32 ............G............... AGTTTGAGCCGTCTCCTTCTTTCTTGTAAGAA 3963329 28 92.9 32 ............G.............G. TGTTAAAGCACCCACAGCAAAACCAATAGAAT 3963389 28 96.4 32 ............G............... ACACCAAAATAACCACTAATCTGCATCGCAGA 3963449 28 100.0 32 ............................ TTGCAGAGTCTCAGAGCAAGCTAGCGCAGATG 3963509 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTGCTCGACTGCCACTCTCTTTCGCAAATGCAACCTGTATGTCGATGCCTTACTGCTTATCTGGACACCCTTCAACGCGAGGTGGCAAAATCGATGACCGATTTTTACGTTGTCGAAAGCGCCGATGACCAGCCTCTGAAGCGAAAAGAGTGGCTTTTAGAAGATACCGAAACGCTTTGTGATTACAGCCGCGCGTTAAATCACGTTTTGCAGATTTCACACGTTGATGGCGAGATGCGCCCTCATCTTACCGGCCTGCTGCACGACATCACGCACGCGATTGCTGACGATCTCAATGGCTCTCAGATCCAGGTCACTAACCGTTCCCTCTAACCGAACCGGGCCGGGATAGTTCCCGGCACCATGCAAAACCCTTTTTTCAGATGATTTGTAACGTATTGATTTTATTACACGTAAATAACCACTCAGAAAAAAGGGTAGAAATGGCTGAATGTTGATTATTTTGCGTCGCAACAATAAGATAGCGCCGTAACACTTTA # Right flank : AGCGCTTAAGCCGCGCCGCTGAACGTGAAAGACGTTAACTGCCGCTCAGGCAGCCACCCGTCATCAAATAAACACTCCACCAGTCACTGACGCCTTCCCCTGCATATCACTCGCAACGATGTCTCTTCTCACGGAAATATCGCGACATCAGAATGAATAACACCGCGTCATGGTTAAATAATACAAATAAATAATCTTAAAAAACGCACATAATTAAATTTATTGCTCTTGTGAATAATGTCTGAAAATAAACGGGAATTTAATCGTGTATTAGTCCTATTTATTTTGCGGTTTGATATTCATCACATTTAATGTGGCCGACTGTCTACTAACATACTTGACTAAATATCGCTGTTGAAAAAGGTTTTTTAATGCCTGCTAATTTTGTCATGCCTTCCGATCTTAAAACGATTTTGCATTCGAAACGGGCCAATATTTATTATCTCGAGAAATGCCGTGTACAGGTTAATGGCGGCCGGGTGGAATATATCACCCAGGAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3973129-3973877 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJVC02000001.1 Lelliottia amnigena strain JUb66 Ga0439274_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3973129 28 100.0 32 ............................ ATAGACAAACCGATGCGTGACTACCTGCGCGA 3973189 28 100.0 32 ............................ ACTTGGTACCGCTTTGAATCGCTGCATCAGGT 3973249 28 100.0 33 ............................ GTCCATTCTGGGCACTACGGCAGTGGCGGCGAT 3973310 28 100.0 32 ............................ GTTCACCTCCGCTGAAGCACTGGCTGCGCTGA 3973370 28 100.0 32 ............................ GAAAAAGGCGGCGCTAACGTCGAATCCGGTAG 3973430 28 100.0 33 ............................ TACGCGTGCCCCGCGCTACCGAAAATACGCATT 3973491 28 100.0 32 ............................ ATGCCAGCGAGTACCACAACAGCCAGAACTGC 3973551 28 100.0 32 ............................ TTGCACGGCATCCTCAATGCTAATAGTGCCAC 3973611 28 100.0 32 ............................ GGTCTGATTGAACTGCTGAAGCTTATCTAACT 3973671 28 100.0 32 ............................ GCGTGACCTGCATAGCAGTGTGGCGTGCTACG 3973731 28 100.0 32 ............................ AATGAGCATGACAACGAATAAGCAGACACCGC 3973791 28 92.9 32 ...........T.............C.. CTGGAAGACATTGAAGGATATGGCAGTGCTCT 3973851 27 75.0 0 ..........AG...A...-A.G.T... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACGTTCGCTTTCATCAGGCGTAAGTGTTCTGCCCGTGCTTTTTCGGCGGGCGACATTGCGCTCGTTGATGCCGGTGACGCGCAGAATGTCCGCCTTAGACATCTCGGTCCATTCATGAATATGATCAAGCACGCTGACGGGCAGACCCTGGTTGAGCATCTCAATCAGTCGAATACCGCGATTGGCTGGCAGACCTGCATATCGCCACAGCGCATTGTCAGCAGGTTGTTGTGCGGGCACCCATGATCTCATAACGCCTCCCGTTTATGACATATGTCATGCTTTATTATAGTCATTTGTCAGCTCTGAGAGTAGCGATCTTGCGCATGAAAATCCTTCTCTCGAAATATCATTTCCCTTTAGTCTCTAACCCTAATTTTTGGTTCAAATTTAGGTTATTGATTTATAAGGTAAATAATTAATAAGTAAAAAAAGGGTCATGAACGGTTAAAGATGCTTTTTTGTATAAAAAAACAGCGTAGTGGGGTGATAATCTGTCA # Right flank : AACGCCAATATTGCGCATTTCGCACTGAGCTTAATTGCCCACACGTGCTCATTCACTGCTGCTGCGATATAGGTATCAATAACAATCCAGAAATACAAAAAAATAAGGCCGGGGATATCCCGGCCTTATTTATATCTGTACGCCTTCAGCGGCGAAATTAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATACGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCGGTGACCACGTGACCGTTTTCCAGTTCTACGCGAAACATGGTGTTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTAAAACGCAACAAAACAGTTTCGGCGCATTGCCCAGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //