Array 1 4-512 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLE010000003.1 Pasteurella multocida strain B:2 'Soron' Scaffold_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 32 ............................ ACGTTGTAATCCAACCCGATTGCAGTACGATA 64 28 100.0 32 ............................ ATTTGACTAAACCACCATTTATTTTCTTTAGT 124 28 100.0 32 ............................ CCAGAGTCGATATTCGTACAAAAATAGATTCA 184 28 100.0 33 ............................ ATGAGTTGCGGTGGCACTCGGTGCGCTGCAAGA 245 28 100.0 32 ............................ AAAACCGTCAGGCTCTTGAAGTTGAACACCTA 305 28 100.0 32 ............................ GTTTACTGGACAGAAACGTATGTTTCTCAAAC 365 28 100.0 32 ............................ AGTAAGCCCAAGAACGTTGAGTGACTTTTCCT 425 28 100.0 32 ............................ GCCATTTAAACGCCCCAATAAATCACTGACAA 485 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 GTTAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CAAG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 180484-177213 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLE010000028.1 Pasteurella multocida strain B:2 'Soron' Scaffold_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 180483 28 100.0 32 ............................ TTTAGTTAGCTTAGGCGGCGGTACCCTCAACG 180423 28 100.0 32 ............................ AGATATATTTTTACCTGTACCAAAACATAATT 180363 28 100.0 32 ............................ TGAATAAAATCGAATTCTATACTGCTTACAAA 180303 28 100.0 33 ............................ CAAGAGGGTGCAACACGTCGTTTCATTCAAAAC 180242 28 100.0 32 ............................ TTCTTCACTAACACGGTTAATCACGCCCTCTG 180182 28 100.0 32 ............................ TATTGGCGCCCGCTTCCACAGCCACCGAAAGA 180122 28 100.0 32 ............................ ACTTTTCTTTGTCGTAAAAAAAGCAAAACTGC 180062 28 100.0 32 ............................ ACCGCACTTTTGAAACGCACACAGTTAGAAAA 180002 28 100.0 32 ............................ ATCACCGTCTGCTTGCACTTCAACGTGTTGCA 179942 28 100.0 32 ............................ TAGCAGATATCGAGGATTTATTGTTGAGTATG 179882 28 100.0 32 ............................ TTCTGAATTGTTGCAATACGCAATACGAATGT 179822 28 100.0 32 ............................ GCTAGAAAACGGTGAGTATTTATGTGCAATTA 179762 28 100.0 32 ............................ GTCATCTTTGACCGATCGATATGTTTTTAAAT 179702 28 100.0 32 ............................ GAATTAATTACAGATTTTGTATGCGTGGCAAC 179642 28 100.0 32 ............................ ATGTTGAGTTTTCTTTCTCTAACTTCTCGTTT 179582 28 100.0 33 ............................ TGTTCGGGTAAGAGACCTAACAGGTCAATTTAA 179521 28 100.0 32 ............................ ATTTTCTTTGCCGTTGGGCGCATAGATAAATA 179461 28 100.0 32 ............................ GATTAAGTTAATTGACAGACCAGAACGTGGGC 179401 28 100.0 32 ............................ TCGTACTTATGTAAGAGTTAGTTTTGGATGGA 179341 28 100.0 32 ............................ TTGACGTTTCAAACTTGCACGAATTTTTGCGA 179281 28 100.0 32 ............................ CAGTCGATTGCTTTCGCTGTAAAGCGGTGTTC 179221 28 100.0 32 ............................ AGTTAGGGTTAAATGGCTGATTTATGGCAAGT 179161 28 100.0 32 ............................ ACCACCGCAAATGTGTTTAATCTTGCATTTCT 179101 28 100.0 32 ............................ AACATTGATCCCATTCCCCGCATTACGTATAA 179041 28 100.0 32 ............................ AAGTGATTTTAGCTCATTGAAAACCGCACGTA 178981 28 100.0 32 ............................ AAGAAGGTGCAACCCGTCGTTTTATTCAAAAC 178921 28 100.0 32 ............................ ACACTTGGGCGAGTTGGCATGTTCAGAATGGA 178861 28 100.0 32 ............................ GTCACTGTTAAAGACTGAATGCGCGGGATCGT 178801 28 100.0 32 ............................ TCGTTCAGCGTTTGCCCGTACAGTTCATACCA 178741 28 100.0 32 ............................ TCGCCCAACAGTAACGCTTACTTTGCCTTGTC 178681 28 100.0 32 ............................ TTTTGTGAATTTTCTTACTAAAAAATCAGCAC 178621 28 100.0 32 ............................ GCAGGTTTAGCAGACCTTGGACAAGCTGCTAA 178561 28 100.0 32 ............................ ATCATTGCAGGCATCTTCAATTGTAATCGTAT 178501 28 100.0 32 ............................ CATTCGTTGGACAAAAACGACTCTTCTTAAAT 178441 28 100.0 33 ............................ AAATATTGAACCGTCGCATTTTAAAAATCCTTG 178380 28 100.0 32 ............................ TTCCATTGCCCACTCACGCGGAAAAACAAGAA 178320 28 100.0 32 ............................ TTATGCGGAGTATGCTAAAGCTATGAATATGA 178260 28 100.0 32 ............................ GTTTTGTTGGTAGCCTTCCGCTTGGACGATTC 178200 28 100.0 32 ............................ ATTGCAATGCGTTTACAGAATTTACAAACACA 178140 28 100.0 32 ............................ AAAACTGGCGATAAAACGCTCGGTCGCTTTGG 178080 28 100.0 32 ............................ ACTGCGAAGTTTTTCGGATTTAACTGGCAGTC 178020 28 100.0 32 ............................ CACTGATGATGTGACGATTCTGCGATAGTACA 177960 28 100.0 32 ............................ ACTTGCTTGTAGTGTTCGGCAAGCTTCGCAAT 177900 28 100.0 32 ............................ AAGTTTCCCTTGATGTTTTTCCAATAGAACTG 177840 28 100.0 32 ............................ ACGATAACGAATTACGTGCAGGTAAGATTGAT 177780 28 100.0 32 ............................ ATCTCGTTTGTCTGCGTACATTAAAGTTAACC 177720 28 100.0 32 ............................ AAGACCACCATTTTTCAAATAAATCAGCAATT 177660 28 100.0 32 ............................ TCATTGGTTCTTGGATCAAACGATTGCACAGC 177600 28 100.0 32 ............................ AAAAAGTACCAGCGGGCGCAGTTGAAATCAGC 177540 28 100.0 32 ............................ TCTCTCGCCCCATTACTAATGACCAAGCTCTC 177480 28 100.0 32 ............................ TATCGGCTAGGTTCAGGACGCTTGTTTTCAAA 177420 28 100.0 32 ............................ ACTCTTCAAAATCTTCTTTTCTTAAATCCCGA 177360 28 100.0 32 ............................ TATAAACCGCCTGAGAATGAAGAAAAGAAAGC 177300 28 100.0 32 ............................ TCTTAAAATCCCAGTACCAAGCACCGCAGCAT 177240 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 55 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAGCACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAACGCAACCGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAACAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCTGTTAAGCAACTTCAGTTAAAGAACAGAAAAGGCCCATTATGCTTATCAGATAACGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGTGGAGGTGGCACCCCCTTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 258157-259626 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLE010000030.1 Pasteurella multocida strain B:2 'Soron' Scaffold_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 258157 28 100.0 32 ............................ TCTTTCATAATCTTACCTGTAATTTTGCCCTC 258217 28 100.0 32 ............................ TTTAAAGCAGGTCTAAATAGTGTTAGCGGTAG 258277 28 100.0 32 ............................ TTTTCACACGGGGACATTGATTTTAACGAAGA 258337 28 100.0 32 ............................ ACTTTCATCTCAATATACAGCCCACAATAATT 258397 28 100.0 32 ............................ TTTCCACCCTGTCCCAGTAGTGACTTGAGTAT 258457 28 100.0 32 ............................ ATTCTTCTCCTCATTAGAAGAGAAATCTTTTG 258517 28 100.0 32 ............................ TATGCGACGTTAGTGAAAATATCTTGTGGTGA 258577 28 100.0 33 ............................ GTCTCACTGCAATAATTGACCAAATCAATACAA 258638 28 100.0 32 ............................ AGAATTAGAATCACCTACAGCACGACAAATTT 258698 28 100.0 32 ............................ TGGCTAATGAAGTTGAAGATCATCCCTACAAC 258758 28 100.0 32 ............................ AAGTGAAAAGATAAAAGATAATCACCGTAGTT 258818 28 100.0 32 ............................ AACGGGTGCAATATCGTCCCATTTGTCACGTT 258878 28 100.0 32 ............................ TTGGGGAATTCAAGGCGGTGATGCCGAAGATA 258938 28 100.0 33 ............................ ACAACCAACATTTAGCCCAAGCGATACCATTGG 258999 28 100.0 32 ............................ TACTAAAGCTTCTGCTCGTGGTGAAACATTTC 259059 28 100.0 32 ............................ AAGAATGTCATTAATTGCGAAGCGGGCATCAC 259119 28 100.0 32 ............................ ATCAACTGTGAAACCGTCTTGCTGTTCAAGAT 259179 28 100.0 32 ............................ AGACGGATGGATTGCGTTTGATAGTATTCAAT 259239 28 100.0 32 ............................ TCGTAATTCTGGTTCAGGTTCAGGTTCTGGTA 259299 28 100.0 32 ............................ GTTTTGGCGCTTAATCACCGCAATCGCGGTCA 259359 28 100.0 32 ............................ AAAATTACAAGAGCTCGGTTGGTGGGGAAAGC 259419 28 100.0 32 ............................ AAAATTACAAGAGCTCGGTTGGTGGGGAAAGC 259479 28 100.0 32 ............................ GATCGCGCGGTTCATTTCAATTGCGGGGGCAA 259539 28 100.0 32 ............................ ACGTTGTAATCCAACCCGATTGCAGTACGATA 259599 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 32 GTTAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTAG # Right flank : ATTTGACTAAACCACCATTTATTTTCTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 33-720 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBLE010000031.1 Pasteurella multocida strain B:2 'Soron' Scaffold_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 33 28 100.0 32 ............................ GCCATTTAAACGCCCCAATAAATCACTGACAA 93 28 100.0 32 ............................ GTTTTCAAAGCTCAAATCTTCGATGACTTTCG 153 28 96.4 32 .................T.......... CAATGCGTTTCAAGCTGTCCCATAATTTGCCG 213 28 100.0 32 ............................ AATATCATTTAGATATTTTAGAAGAAAACGGC 273 28 96.4 32 A........................... ATCTTATGGTTATACCGTGCGTCGTAAAAATG 333 28 100.0 32 ............................ AGAACTTGCGAAAACTATTTTTAAACTGATTA 393 28 100.0 32 ............................ TATTACACCGCTCACTTTATTTGCTTGTGTAA 453 28 100.0 33 ............................ GTCATACCGACATCAGAACGTGTGAGATTTGGC 514 28 92.9 32 ...C........A............... GTTACACCTGGGTCATTCGTTAGTGCTGCCAT 574 28 96.4 32 ............A............... TGTGCAAAAAGTCCAAAAATACGGTGCAGGAC 634 28 96.4 32 ............A............... GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGA 694 27 82.1 0 ............A.......-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 12 28 96.7 32 GTTAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGTAAGCCCAAGAACGTTGAGTGACTTTTCCTG # Right flank : TTGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAACGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //