Array 1 5323-5943 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPF01000079.1 Salmonella enterica strain NGUA-33_S9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5323 29 100.0 33 ............................. GCGAGAATCCGCGCCGAATCAGTCGCGGTGCTG 5385 29 100.0 32 ............................. AAAACGACCTGCCCTATTGAGGAGGAGGTTCA 5446 29 100.0 32 ............................. AAAACGACCTGCCCTATTGAGGAGGAGGTTCA 5507 29 100.0 33 ............................. CATGGTTTCAAGCGCTACTCCCTGCCCGGTCTC 5569 29 100.0 32 ............................. TTGACGAACGGAGTATTGAAGATGTCACACCT 5630 29 100.0 32 ............................. TAATAACAGGCGGTTCTATTACTACCGATTTC 5691 29 100.0 32 ............................. TCATACACAGAGTCTTCTGGAAACAAGCCTCG 5752 29 100.0 32 ............................. CCGCAACGATCGAGAGCGAACTGGACAGTAAA 5813 29 79.3 12 ..................AT...CGC.T. CTAAACATAGAA T [5833] Deletion [5854] 5855 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 5916 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.6 30 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACACACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGCCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22080-23146 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCPF01000079.1 Salmonella enterica strain NGUA-33_S9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22080 29 100.0 32 ............................. CGATTCAATATCAGCGGCCAATTCCGCTAACG 22141 29 100.0 32 ............................. ACGGGACTGTTAGGGATAGACCCCGGAGATTT 22202 29 100.0 32 ............................. GGTTACCCGGCGTTTCTGGCTGCGTACCGGCA 22263 29 100.0 32 ............................. TTCGAGTGTCTCGTTAAAAGGCGCGAAAATAC 22324 29 100.0 32 ............................. GTTTAATCTGATATCCCCAGCACCAAAGGAGT 22385 29 100.0 32 ............................. GAGTGGCGAAAGGGGCCGGCCTTGAAAAGTGG 22446 29 100.0 32 ............................. CTTCAGGCCAAACGTACAGCGGAGCTACCAGC 22507 29 100.0 32 ............................. ATCCAGCGCCTCGCGAGTGTTGCCAGTTTTGC 22568 29 100.0 32 ............................. CCAATTCCTCTCCGCGCTGCTGCGTGATTTTC 22629 29 100.0 32 ............................. GCACCCCCATATCTCCAGCCAACGTCTTGAAT 22690 29 100.0 32 ............................. TTGTCTTTTTTCATGTTGATGACGTCGCCCTC 22751 29 100.0 32 ............................. ATCGTTGTCCCGATCAGAATGTCGCCGCAACA 22812 29 100.0 32 ............................. TGTTGGTATACTAACTGTCGCTAAGTGTTCAA 22873 29 100.0 32 ............................. CCATCACCAACTCTCGGTGTTATGGCTCCTTG 22934 29 100.0 32 ............................. ATGATGAAATCACCCCGGAGGGGCGGGGCGAA 22995 29 100.0 32 ............................. CCTACGGGGATATAAGTAAAGAGATCCAACGA 23056 29 100.0 32 ............................. GCTGGAGTGTTACGCCCTGACTCATAATTTGA 23117 29 96.6 0 ............T................ | A [23144] ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAAAATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGTAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //