Array 1 42653-41724 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJXJ010000007.1 Providencia rettgeri strain Pvs3 NODE_7_length_87242_cov_20.394387, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 42652 28 100.0 32 ............................ TTCACCTCTGTAATTCGAGGAACAATATCGAT 42592 28 100.0 32 ............................ ATTTTTTGCCGTTCCACTTATCAAATTCTGTT 42532 28 100.0 32 ............................ TGTGAAATACCGATATAATGAATCCGTGTACC 42472 28 100.0 32 ............................ CGAACCAAAGAGATCACCGCTGTTAATTTGCC 42412 28 100.0 32 ............................ GAAGATTTAATTTCCCTTGGCAATATCAACCA 42352 28 100.0 32 ............................ ATTGAAGTTAATACTGGTGTAGCCGCTGTTGT 42292 28 100.0 32 ............................ TTGAAATTTCAATTCTAGCAGATGATATTTCT 42232 28 100.0 32 ............................ TTATCACCTAATGCCTTACCAGCATCATATTG 42172 28 100.0 32 ............................ AATAGCGCACCATGATTTTATAACTCATTGAT 42112 28 100.0 32 ............................ AACTTGCGATCTATTGCCTTAATTTCCTCGTC 42052 28 100.0 32 ............................ CTAGGAACCCGATCACCCTCATGCATAGCTAA 41992 28 100.0 32 ............................ ACTGCTCGCAATCCGTTTTCATGCTCCTGCGG 41932 28 100.0 32 ............................ TCACTATTAATAGCGATATGAATGATTAAGTG 41872 28 100.0 32 ............................ CTAACACCCCTCATTTAAAGCTGGTATATCAG 41812 28 100.0 32 ............................ AGTGGATTAAAGAGCTTAATTTATCAACTTAA 41752 28 89.3 0 ...T......A.........T....... | G [41726] ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGTCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACCGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAAGTTTTAAATCAGCATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : GAATATTAAAGAATAGATATCTAGATTCTCTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGACCGGGTAATCAGATAATAATAGAGATAACTAGGAGGGGTTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAACCTGCATTTAATTAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAGCATACTGATACCTATAGTTAAGGTGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 51978-51290 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJXJ010000007.1 Providencia rettgeri strain Pvs3 NODE_7_length_87242_cov_20.394387, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 51977 28 100.0 32 ............................ TTTTTAACTTCTGGCCAGTGATGATTTAATAC 51917 28 100.0 32 ............................ TAGCATGAACACTGAATATCAGTGGCCTTATG 51857 28 100.0 32 ............................ ATAATCCCTTGCTGCATTCCAGACGGTCTATT 51797 28 100.0 32 ............................ TGAGTAAGCAAATCATCACGATAATCATAGAA 51737 28 100.0 32 ............................ TTGTTCAGATAGCGGAAGCAATCGGCATGAAT 51677 28 100.0 32 ............................ GTAGGCATGTAAGCCGACATACATTTGCTTAA 51617 28 100.0 32 ............................ CGCAGAAGTTGAAGTAATAACGCAAGTATATT 51557 28 100.0 32 ............................ GCAGGAAGGCAAGCCTAGCAATAACGCAATAC 51497 28 100.0 32 ............................ GAGAGGGGCAATCATTACCTGAATCGCTTTGT 51437 28 100.0 32 ............................ GTTAACGATAATCATAACGTCACTATGTATCT 51377 28 100.0 32 ............................ ACAAGGTGTTTATGAGGCAGTCGCAACAAACT 51317 28 89.3 0 ............A.........A.A... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.1 32 GTTCACTGCCATGCAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACTTATATTTACGCACTATTTTTGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : CAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGGAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCATGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //