Array 1 34717-32119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRIC010000067.1 Streptomyces sp. BV129 BV129_67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 34716 29 100.0 32 ............................. TCCGGCGACACCGGCGGGGACGGTAAGGCGAA 34655 29 100.0 32 ............................. TCGTGGTGTTCCACTGCATGGTCGCCCCGGCT 34594 29 100.0 40 ............................. TCCCCCGGCCGCGGGTCGACAGCGGCGTCCCGCGCGGGGG 34525 29 100.0 32 ............................. CGGACGGCGTAGATGTCGGTGTAGTTACCGGT 34464 29 100.0 32 ............................. GCCCTTCCAGACCTCCCGGACCTGAACCCGGA 34403 29 100.0 32 ............................. CCTTCGAAATCTTTGCAGTACGGCAGCGGGAC 34342 29 100.0 32 ............................. CCCTCCGACCACTCGCGCCGCCTCAGCAGCAC 34281 29 100.0 32 ............................. GTCGACAGCTCCCGGACCGACGTGCAGTCACT 34220 29 100.0 32 ............................. CTGAACAAGAACGTCCTGATGGCGGGCGGGGC 34159 29 100.0 32 ............................. GTGGCGGGCTCCGCGTTGTGCAGCGGCACGTT 34098 29 100.0 32 ............................. TAGTGCCCGCGCTCCTCGTCGGCCGTGGCGAG 34037 29 100.0 32 ............................. CCCGTCACCGTCCGGGTCGGCGGACGTCTGCT 33976 29 100.0 32 ............................. GTGATCGGTGACATTTTCGCCACGGTCGGGAA 33915 29 100.0 32 ............................. GCGCCGTTCGGCTACAACGCGGACGGGAACCC 33854 29 100.0 32 ............................. GCGCTCCGCACCATCAGCGCGGGCCAGTCGTC 33793 29 100.0 32 ............................. ACGGACTGAGTGGCGTGCACACCTCGGCTGGT 33732 29 100.0 32 ............................. CCGTCCAACGCTCCACCGTCAACCGGCAGGAA 33671 29 100.0 32 ............................. CCGCACACCGGGCGCAGCGTACGGCCGGCGCC 33610 29 100.0 32 ............................. TTGGTGCAGGCCGGTGTGCTCCCGGCGGACTC 33549 29 100.0 32 ............................. CTCCGCACCCTCGCCGCCACCGCAACGCCTGG 33488 29 100.0 32 ............................. ACCATCGACGTTGTCTTCGATGCGGTGATGCC 33427 29 100.0 32 ............................. CAGCGCGACCTCATCGCCTCGAAGATCACGGC 33366 29 100.0 32 ............................. TCGTGCCCGGGCTCGCTGAAGCCGGTGCAGGC 33305 29 100.0 32 ............................. ATCCCCGACAAGAAGACCCGCGTCACCATGAA 33244 29 100.0 32 ............................. CCCGTCACCATCCGGGTCGGCGGACGACTGCT 33183 29 100.0 32 ............................. GTGTCCAGGCGCCGGGTGGTGAGCCGGGCGCC 33122 29 100.0 32 ............................. CTCGTGCAGGCCGGTGTGCTCCCGGCGGACTC 33061 29 100.0 32 ............................. GTGACGGCTACGCAGGGCCGGTGGATCGCCCG 33000 29 100.0 32 ............................. ATCGGCGTGCAGACCAGCACCGCCGTGACGTT 32939 29 100.0 32 ............................. ACGAGCCGGGTGGCGTTCCAACGCGTCCTGTC 32878 29 100.0 32 ............................. TCCGCGAGGCGGCGCGCGCGCAACCCGGCATC 32817 29 100.0 32 ............................. GCCATCAACACCGCTCTCGATGTGGCCGTGCA 32756 29 100.0 32 ............................. TTCACGGGCGGCAGCAAAAGGTCATCGAACTG 32695 29 96.6 32 ............................A ATTGCGCGATCCCCTGCGCACCCACTGGCGAT 32634 29 100.0 32 ............................. CTCGTCGACCCGCGGGCGGTGCACGAGGGTGG 32573 29 100.0 32 ............................. TCATCAACACCCGCATGGAGCCCAACGGCTCC 32512 29 100.0 33 ............................. ACCCCCCTTGTGGGCCTCGGCCACCTGAACCCC 32450 29 100.0 33 ............................. GCGTCGGGGTGAGAGGGGGTGTGGGCAGGGCGG 32388 29 100.0 32 ............................. CCGAAGCCGTGGCCGCCGACGGTCCCCAAGCA 32327 29 100.0 32 ............................. GCGACGGTGTCGGCGATGAGCCGGCGGAGTTT 32266 29 96.6 32 ...T......................... TGCAACGACGCCGTTATCAACGGTGACAGCGC 32205 28 93.1 28 .....................-......C TGCCGACGTGAACGGAGGCGCCGCCGGA 32149 29 82.8 0 .C...................A..GC..C | C,G [32138,32144] ========== ====== ====== ====== ============================= ======================================== ================== 43 29 99.3 32 GTCCTCCCCGCAGGTGCGGGGGTGTTCCG # Left flank : CGAGCTGTTCTCGCCCGTGACGGGAACAGAACTGAAACCCGGAGAGCTTGCCGATGTCGTGCAGCCCCGCACACAGGCCGACCAGTGCCCGTGCGGCGTCCTCGTCATCCTCCAGTCCCAGACCGGCCGCGATGCTGCGACGCTGGTTCGCCGACAGGTACACGTCCCAGAGATGCAGTGCCATTGCCGCCGCATCCAGCAGGTGCCGCACGAGCGGATACGCAGGCAGATCCGGGTCCAGCCCTCGGGACTTTCCCCAGAACATCTCGTCCGGTACTTCCCTGGAACCCATGCCAACTCCCTCTCCCCGCGGTTTTTCAACGGCTTTATCAGTGCGACAGATCCAAGCACTACGCACTGACAACGCTCCCAGCCTCTGACATCAGCTACGACGGGGAGTCGTCTAGGCTGATCGATGTGAGGCCCTCAACAACAGACCGCCATACGGTCGATCAGGCAAAGGAAGTGCAAACGGGCCGCTGAGTGCCTGGTCAGGAAGG # Right flank : AGCCCGTCAGCATCTGGGCAGCGCAACCTCGTGATCGCTGCCCGATGGTGCCCAGCCGTGCGCGGCTTTCCGGCCCCCGGCCACGAGGTCCGTGCGAAGGAGGCTCGGGACGGAGGCTGTCCGTCCCGAGCCTTGGTGCCGTTCGGCGAGTGGACCCCGTGAGGGGCCGTTTGGGAGTGGTCTCGTGGCTGTCAGGCGCTGATCTCGGTGCGGTCGCCGCCCCAGAGGGTGTGGAAGGTGCCGTCGCGGTCGGTGCGGTGGTAGGTGTGGGCGCCGAAGTAGTCGCGCTGGCCCTGGGTGAGGGCGGCGGGGAGGCGGGGGGCGCGCAGGGAGTCGTAGTAGGCGAGGGTGGCGGCGAAGGCGGGGGTGGGGACGCCCTGGGTGACGGCGGTGGCGATGACGTCGCGCCAGTCGTCCTGGGCGGCGGCGATCTCGTCGGCGAAGCCCTCGTCGGCCAGGAGACTGGGGAGGTCGGGCTGGGCCTCGTAGGCCTGGGTGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCAGGTGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGATGCGGGGGTGTTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 44156-46440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRIC010000067.1 Streptomyces sp. BV129 BV129_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 44156 28 100.0 33 ............................ CTGAGGCCACAGTACACCGGCGGTGATCACTTG 44217 28 100.0 33 ............................ GCGGAGGCGGCGCGGTTCCAGCGGTTCCCGAAG 44278 28 100.0 33 ............................ GCGTTCACCTGGTTGTGCTCCTTGCTGCGGGAG 44339 28 100.0 33 ............................ GCGGGTGCGGCCCGCACCCACCGGTCGATCACG 44400 28 100.0 33 ............................ ATCATGATGTTCGACCCGTGGTCACTGGAGACG 44461 28 100.0 33 ............................ GCCGCCGGCCGGTGGGTCATCGACATCGCCTCG 44522 28 100.0 33 ............................ CCGTCCACAAACTCACCGGCCACGACACCACCG 44583 28 100.0 33 ............................ CGATACCGAGTCGAGTGCCTGAACCCGCAGTGG 44644 28 100.0 33 ............................ ACCAATTTCAGCAAGCAGGCGTGGCGGTACGCG 44705 28 100.0 33 ............................ CAGCGGGCGGCGCGGTACGCGGCGGCCTGGGGG 44766 28 100.0 33 ............................ CACTGGGGCGGCTGAAAACCGCTCATCTAGCCG 44827 28 100.0 33 ............................ ATGATCGAGTCACCCTTGACGTACCGGTCCCGG 44888 28 100.0 33 ............................ CTTCCGGGCCCGCTCTACCCCATCGTGGTGGAG 44949 28 100.0 33 ............................ GCTGCGGACGCCGGACCGGTCCGCGCTCGAATG 45010 28 96.4 33 ...........................A TGTGAGCGTTCTAGGGGGCGGGCTCCCGGATCG 45071 28 96.4 33 ...........................T CCAGGCGTCCTACGGCGGCGGGTCCGGTGTGGG 45132 28 100.0 33 ............................ ACCTTCACGGGTAAAATGATGCGCGTGCATGAG 45193 28 100.0 33 ............................ CCGTTCACCGGCTGGCCCTGGGTGATGTACGAG 45254 28 96.4 33 .....................C...... TCCTCGACCAGGGCGGTCTAGGCGACCGTCCAG 45315 28 100.0 33 ............................ TCGACAATGCCGTTGCTGATGTTGAGGAGCATG 45376 28 100.0 33 ............................ AACCCGGCGACCATGCCGGGCAGACGACCGAGG 45437 28 100.0 33 ............................ GCCCTCGGGATCACGGGCCTGCCCCGCACCTCG 45498 28 100.0 33 ............................ TCCCCGCCGTCGTCGGCCGCGCCGCCAGCGCCG 45559 28 96.4 33 ...........................A TTCGCGCAGGCAGTGCACGGAATGTCGCCTGAG 45620 28 100.0 33 ............................ TGGGCGACCGGCTCGAAGGCCAGCACGGCCACG 45681 28 100.0 33 ............................ TCCGAGGGCGGGTCGACCCCGTCCCTGAGCCTG 45742 28 100.0 33 ............................ GTCGCTGCGCTGAGCGGAGTACTCATGCGACGG 45803 28 100.0 33 ............................ GCGGCCGCCGGACCGCTGCTCGCGCTTGAGGCG 45864 28 100.0 33 ............................ TCCGGGTCCGGCCCCGAGCCGTCCGGGAACCCG 45925 28 100.0 33 ............................ TCCACGGGGTTGTAGGTGAGGCTGGCGGGGCTG 45986 28 100.0 33 ............................ ACCCACCCGCTCGACACCGTCGGCGTGCAGTGG 46047 28 100.0 33 ............................ CCGGAAACCCACAGGTGGCAGGGCCGCCGCATG 46108 28 100.0 33 ............................ TAGAAGCGCTGGCGCGAACCTGACGGCGCGCGG 46169 28 100.0 33 ............................ ACGAGGCTGTGCGTGAGCCCGCGGATAAGGGGG 46230 28 100.0 33 ............................ GCGTTCTGCAACACGTGCTCCGTCCTGGCCGAG 46291 28 96.4 33 ....T....................... GCGACGGCGGGGTGCTTGCCGCGCTGCCCGCAG 46352 28 100.0 33 ............................ GGGGCCGGAGAGCAACCGGCCCCCGCCCCATCG 46413 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.5 33 TTCTCCCCGCAGGCGCGGGGGTGTTCCG # Left flank : CTCCGTCTCCTGCCGCGCATCGTCACCGACACTCAGCGCCTTCTCACCCTTGGTTCCGCCACCGAAGTCCCGGATCCCGCCGAACGGCGTGACGTGCACATGGTTCACCTCTGGGATCCCAAAAAGGGCGTGCTTCCCGCCGGGGTCAACTACGCGGACGGGATCTCCTGATGCCGGCCATGCTCGTCATCGCCACCACCGCCGTCCCCGACCACCTACGGGGAGCCCTCAGCCGGTGGACCAGCGAAGTAGTTCCCGGCATCTTCGTCGGCACCGCCTCCGCGCGCGTCCGCGACCAACTCTGGAAAGCAGTCACCGAAACCGTCGGCGACGGAGCAGCCGTTCTCGTACACCCCGCACCCACCGAACAGGGCTACGCCATCCACACCGCAGGTAGCCGCCGTCGTACCCCTGTCGACTTCGACGGCCTCACCCTCATCCGTATGACCGGCCAGGCAAAGAACGAGCAAAGCCACTCTTGATGCCCAGCTCAGGAAGGG # Right flank : GCACGTGGCCGACGTACGCACGTTCGCCGGTCTGTTCATCGGGAACGCGGGGGGAGCGGGGCCTCCCGGGCGGCAGACCCACCTGGGGCCCGCCCGGCCGGGAGTCACTGCGCCGCCTGCTGGAGACCGCCGGCTGAACGCCCGGCCCGCGCGCGTCCCGTGCCGGGCGAACAGGGCGTGTCCGCGCGGGATCCGGTCCGCGCGGCTCAGGAACCGGCCGAGCCGGCGGCCGCCGCGGCGATCATCGCGGCCCGTACGGCGTCCAGTGCCTGGCGCACGGCGTCGCCGCCGGGGTTCTGGTCGGCGATCTCCTTCGCCCGCGTCCGCACCGTCCTCCGGTCGCCGTCGACCACCTTGTGCGCCGCCCGCACGGCGTGCAGCAGCGCGACGAGGTCGGCGGTGCGCCGGTCGGGGGCCGCACCCGCCACAAGGACGTCCTTGATGCGGCGCGTCACGAGTTCCTCGTGTCCCGTGTCCGTCGCCGGCCAGCGCCTGCGCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTCCCCGCAGGCGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCTCCCCGCCGACGCGGGGGTGTTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 406114-407339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRIC010000066.1 Streptomyces sp. BV129 BV129_66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================== ================== 406114 29 100.0 32 ............................. GCGTCTGGGACTGGTACCAATCCGTCTTCTAC 406175 29 100.0 32 ............................. CGACCACCCTGAACTGAACATCCGCGCGACAA 406236 29 100.0 33 ............................. CTCATCTTCCCGGCAGGCTCCACCGTCCTGCCC 406298 29 100.0 32 ............................. CCGACGGAGATCCAGGCATTCGTCCGGGAAAT 406359 29 100.0 32 ............................. ACCTCGTCCAGGAACTCGCGGTGCCCGTACCG 406420 29 100.0 32 ............................. GGCGCGGCGGACACCAGTCGACCGGCCAGCTT 406481 29 100.0 32 ............................. CGGAGCCTGTACGCGGCCAGTTCGGCCGATGA 406542 29 100.0 32 ............................. GCCGCCGACTGGAACGACGACGGCGAGGACCA 406603 29 100.0 32 ............................. TGGATCTGGGGCAAAGTCAAGGCCGCCGTCGC 406664 29 100.0 32 ............................. AGGCCGCTCGGGTTGATGACTGCGACGCTGAC 406725 29 100.0 32 ............................. GTGTACTCGGTGTTGGGCTGGAGCCCGGAGAC 406786 29 100.0 32 ............................. CAGAGCGGCAGAGCGGCCGGGGGAGTTTCGTT 406847 29 100.0 32 ............................. GTCTGCGGCGTGCCGCTCCCGAGCCGGCCGCT 406908 29 100.0 32 ............................. GCTCCGCGTCAGCTCCCCTTCCCGAACGCCAA 406969 29 100.0 32 ............................. GCCGGCCTCGGTGCGGGCCTGGTGCACGGTGT 407030 29 100.0 32 ............................. GGCTGGCCGTCAGGGCGCAGGGTGTCGCGGAC 407091 29 100.0 32 ............................. ACGGTGAGGTCGTGCAGTGAGTAGGCGGTGCC 407152 29 100.0 32 ............................. ACGGTGGTCGACGCGATCCTCTCCTACCAGGA 407213 29 93.1 68 ..C....A..................... TACCAGGACTGGTCGGACAGCCTGTCCGGCGACACGATGGGCGGCTTCATCAAGGGCGTCGCCATCGT G [407220] 407311 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ==================================================================== ================== 20 29 99.7 34 CTGCTCCCCGCCCGCGCGGGGATGGCCCC # Left flank : TTTTTGATCTTGGCGGTCCTTGGCGGCCTGAGGCGGGCTCCGGCGGTCCTGATGCTGACTTCGTGCTGACTTTCGTGATGGGTCGTCAGGTGTCGGTGGGTGGTCCGTGACGTCGGGATCGCAGTACTACTGTCGGCAGTATCGACCTTGCGGCTGCGAAGGTCACGTGGAGGGGGAGAGGTGCTTGCGCTCGCTCCGCCTGTCTCCGTCGCGCGTGGGTCACGGTCGGCTCAAGCCGCGTGTGGTGTGTGCCGCTGCGCTCGACCTGCAGAAGCCCCGATGGGCGCGGGCCGTGCAGTGAGTGCGGTCATCCGGCAGAATCGCCCCGTAACCTAGAAAAATCACCATCGGCCATTGGGGTGATCTTGACGGTGGGAGGCGGGTTGCGTGGGCGCTTCACGGAAAGTGGGCGGTGCGGCGAACCTTGTCATGAAACGTCGGTTTCAGTGAAAGTCCTGGAATCAGGTTCCCCGCAGGAGTAAAGCCGCAGCTCACGGAGT # Right flank : CGCTTGTCTTCCTGGTCGCGGGCGATCGACCGTGCCTCGTCAGCAGATCGTCCAGGGAACAGAGTGATCATGGCACCCACAGGTCTCATCCTCGGCGTGGGCGCGTCAGCGGGTGCTGTTCGTCCGGTTGCGGACGATCTCGGCGAGGCGGGTGGCCTGCTCGTCGACTGCCTGGGGGCCGTTGCCCGTCAGCAGGGCGTGGTCGTCGTCCCAGACGACCTTGACCGCAGCGGGGTTGAGGGTGAGGCTGACGTCGTAGCCGGCGTCTTTGAGTGCCACGTCGACGTAGTAGAGCAGGCGGGTGCGCTCCCCGGGCACCTTCGGGTAGCCGAAGGTGAGGATGGCGTCCTCTCCCCACTTCGGCACGGTGGTGATGTGCGCGCCCTTGAAGGCGTGGTCGGCTGTGGTGGTGATCTTGCCGGTGTCGTCGACCCGGTACTTCGCGGAGGTGAGGGCGATCGGCGCGTGGCAGATCAGCGAGATCGGTACGCGCTCGTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCCCGCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 460238-463803 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRIC010000066.1 Streptomyces sp. BV129 BV129_66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 460238 29 100.0 32 ............................. TGGGCCTGGCAGTCCTGCAGGACGGAGCTGTA 460299 29 100.0 32 ............................. TGGGCGTAACGAGCGCCGCGGCAGATCTCCCC 460360 29 100.0 32 ............................. AGCCGACCGGATCTGCGCGACCGTAGAGCCAC 460421 29 100.0 32 ............................. CCCGGCAGCGAGTCACGGAGCCTCGTCGATGG 460482 29 100.0 32 ............................. CGGGCTTGATCTCCCCGGTTGGCGTGCCGCCA 460543 29 100.0 32 ............................. TTGGGCGGTGCCGTAGGTGGAGGCGCTGTAGT 460604 29 100.0 32 ............................. GACGAGGGCGCGGAGGTGTTCTCCACCAGGTC 460665 29 100.0 32 ............................. GCAGGGGACAGTTCGGAGGCCAGATCGGCGGC 460726 29 100.0 32 ............................. GTCAGCGGCCTGAAGCTGAAGGTGCGCGAGTT 460787 29 100.0 32 ............................. CTTCAGATCCGCACGGGTCATCTCCTGGGCCA 460848 29 100.0 32 ............................. CGGCCCCGACATGCGCGAGACGGCTAGCTGAC 460909 29 100.0 32 ............................. TATCTGACCGACGCCGACCACCTGGCCCGGTA 460970 29 100.0 32 ............................. TTGGGCTGGTCGTTCACGGAACGTCCTCTCGG 461031 29 100.0 32 ............................. TGGCCCCCGACGGTGAACTGCTGCGCTACACC 461092 29 100.0 32 ............................. GCGACACCGCCGCCCACTACGGAACCGACGAA 461153 29 100.0 32 ............................. GCGACGCGGATCGGGAACTGGGAGTCCTGGCC 461214 29 100.0 32 ............................. GGCGGCATCGACCCGCAGGTGGCCGCACAGAT 461275 29 100.0 32 ............................. GAGGATCTCGCCGCCCGCGCGAGGGACCTGCT 461336 29 100.0 32 ............................. GAAACGTCGCTTCGCACCACGCGAAGCGAGAG 461397 29 100.0 32 ............................. GAGGCGGGCGAGCTGGGCGCGAAGTCCGGCCG 461458 29 100.0 32 ............................. GGGCGCGGTGATGGTGTCGCCTGGCACGTGGC 461519 29 100.0 32 ............................. GACGGTCGGTTCGCGGCGACGGCCCGTGTCAC 461580 29 100.0 32 ............................. GTCTTCGGCGTCCACCGGCCGTCGAGCCGGAC 461641 29 100.0 32 ............................. GCCCGCGTCTGGATGGGGTGCGGCCGGGACTT 461702 29 100.0 32 ............................. TCGGTTACGCGCGCAGCCCTTGAAGCGGTCAC 461763 29 100.0 32 ............................. GACTCCGTCCATTCCTCGCCGCCCGAGGTGAG 461824 29 100.0 32 ............................. GCCGAGCTGGAGCAGGAGCAGCAGGACCAGGC 461885 29 96.6 32 ............................T GAAGTCAGGCCAATGAGGGCACCATGCAAAGG 461946 29 100.0 32 ............................. AGTTTTCGGCTGAGATCGTCCGAACCGGTTGC 462007 29 100.0 32 ............................. GTCGTCCAGGGAGGTGACGCGGCCGTGCTCCT 462068 29 100.0 32 ............................. GGGCTACGCGGCGAGCAGCTCCGTCCAGGGTT 462129 29 100.0 32 ............................. CGAACCCGCCAGGGTTCCTCGGTCACAACGCA 462190 29 100.0 32 ............................. GGCAGCGTGTGGCTGGGCCGGGTCAACAGCAG 462251 29 100.0 32 ............................. CAGGGTGGCTCGCCGTAGCTCGCGGACGGACT 462312 29 100.0 32 ............................. TGCGCGGCGAAGTCGATGACCGCGCGGGCGAT 462373 29 100.0 32 ............................. AGCCCGCAGGAGCGGGGATTCGAGGTCACCGA 462434 29 100.0 32 ............................. GGCAGGTCGTGGACGCGGTCACGGGCATCGAA 462495 29 100.0 32 ............................. ATCGCGTGGATGTGAGCGCGGGCGGTGGTGAG 462556 29 100.0 32 ............................. CACTGGATGAGCATGCCGGCGGCGGGCCGGTC 462617 29 96.6 32 ............................T CCGGCACCGTGCTCCGCCTTGTACCAGTCACG 462678 28 96.6 32 ....................-........ GGCATCGTGAGTATCGTCGCCGACGCCCAGGA 462738 29 100.0 32 ............................. TACCCGTTTTCCACGGAAGATTTTGAGGGGTA 462799 29 100.0 32 ............................. AGTCCTCCCCCAGCGACGGCTCCGGCGACTCC 462860 29 100.0 32 ............................. CGTTGGAGCAGCCCGGCGAACCGGCAGAAGTC 462921 29 100.0 32 ............................. TTGGGCTGTGCGGACAGGTGGACCCAGGTGGT 462982 29 100.0 32 ............................. GACTACGAGGGCGTTCTCGATGAGACGGAGAT 463043 29 100.0 32 ............................. GAGAACGGCTCCGAGGCCGCACAGCCCCGGAG 463104 29 96.6 32 ............................T GACCGACCCGACCCCGGAGCGCGGCCGTGTGC 463165 29 100.0 32 ............................. GTGGCGCCGCCCGCGTGCTTCTTGGCCACCGA 463226 29 100.0 32 ............................. ACGGTGGACGGGCGCTCGCCGCGCCAGCGGAT 463287 29 100.0 32 ............................. TACGCCGCGCTCGCGGCCGCGCGACAGATCGG 463348 29 96.6 32 .....G....................... CAGCGTGACGCCCTGCTCGTGCTGCTCACCCG 463409 29 100.0 32 ............................. CTGAGTCGCCGTGATGCGCAGCGCGGACGCCA 463470 29 100.0 32 ............................. GACCCGCTCCACAGCCCGGCGGGTACGGCGAG 463531 29 100.0 32 ............................. TCCTCCACGGTGGAGTCGAAGCAGTTCGCCGC 463592 29 100.0 32 ............................. AACACCATCGCCGTCCTGAACGACGACGCGCT 463653 29 100.0 32 ............................. CATGGGGACACGAAGATCGAGCACATGATCTA 463714 29 96.6 32 ...T......................... GGCTCATCAGCCGCGCTGGCCGCGTACAGGCT 463775 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 59 29 99.6 32 CTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : TCAATTTTTGATCTTGGCGGTCGTTGGCGGCCTGAGGCGGGCTCCGGCGGTCCTGATGCTGACTTCGTGCTGACTTTCGTGATGGGGTGTCAGGTGTCGATGGGTGGTCTGTGACGTCGGGATCGCAGTACTACTGTCGGCAGTATCGACCTTGCGGCTGCGAAGGTCACGTGGAGGGGGCAGGCGCTTGTACTCGCTCCTCTTGTCTCCGTCGCGCGTGGGTCACGGTCAGCTCAAGCATTGCGTGGAGTCTGCTGCTGGGCTCGACCGGCAGAAGCCCCGATGGGCGCGGGCCGTGCAGTGAGTGCGGCGATCCGGCAGGATCGCCCTGCGACCCAAAAAATCCGTATCGGCCATTGGGGTGATCTCGACGGTGAGGCGTGGGCGTGTGGGGCTTTGTGAAAAGTGGCCAGTTTGGCGTACTTTGTGATGAAACTTCGGGTTCAGTGAAAGTCATAAGAACAGGATCCCCGCAGGGGGAAAGCCGCAGTTCACGGAGT # Right flank : CGTGGGCGGCGTCCTCCAGCCGCAGAACATGGCCTGCGCCCCGCCCACGGGGGGCCCGGGGGTGCCCCTATATGTTTGGTCAAGGTCTAGGACCACATGACGGGGCGGGTGTTCGGGGAACCCCTCTTTCGGCGCTCGCAGGCCCCCAGGATCATCCCCGCGTGCGCGGGGACCCCCGCGAGGCCGGGCTCGGTTTTGAACCACTTTCCGAGAAGCGGACTATTGGGTCAGAAGATGTCAAGATGTCTCGCCCGGTCACGGGACGGTGGCCCCGCATGTTTGCAGGCCGCAGCACGTGGCGCCAGTCCAGTTGCGGGATTGCTGTTCGTTCTCCCAATCTGAAGCGCGATGCCCTAGGCGCCCTGTATGTATGTGCCATGACCACTGGGGGGATGGTGGGCCTGGGACTTCGGGCCCGACTCGGCAGGGCAGCTCGGACGGTGTGGGCCAAGCACGATCACGATGCTGCCGGCTGGCTGCCGTTGTGGCGCCACATGGAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 473631-475492 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRIC010000066.1 Streptomyces sp. BV129 BV129_66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 473631 29 100.0 32 ............................. CGGCCTCTACCCCGTGACGAGGTCCCGGACTA 473692 29 100.0 32 ............................. AGCGCCCACATCCCCCTCCCGCCGGTCGACCT 473753 29 100.0 32 ............................. CAGGTTGCCGCGCTGTACTCCGGCGCCGGTGC 473814 29 100.0 32 ............................. CACGCGGGCACACCGATGGCCTCCACCCGGAA 473875 29 100.0 32 ............................. GGCGGCATCGACCCGCAGGTGGCCGCACAGAT 473936 29 100.0 32 ............................. CACTGGTCGAACAGTGGATGCAGGGCATCCCA 473997 29 100.0 32 ............................. AGCCCTCATTGTGCCGATCTTTCACGGAGATT 474058 29 100.0 32 ............................. CGGCCGAAGCGGTCCCGAGGGTGTAGAGCAGG 474119 29 100.0 32 ............................. GCTGCCAAGCTCGGCGGGTCGATCATCGAGAC 474180 29 100.0 32 ............................. CCCGACAGCATGATGCAGGTCGGTGCGGACTT 474241 29 100.0 32 ............................. GTCACCGCGCCCTCGCCGTACGGCAGCATGTA 474302 29 100.0 32 ............................. ATGCTCGGGATCTGGAACGGCGAGGTGGCGAG 474363 29 100.0 32 ............................. CAGCGCGCGGAACTGCCCGCCCAGCGCGACTG 474424 29 100.0 32 ............................. CTGATGCAGGCCCGCGAGATACGCGCCATGCG 474485 29 100.0 32 ............................. TACGTCAGAGCTCGTCCTTGTGCTCCGGGCAG 474546 29 100.0 32 ............................. GAGGAGAGCCCGCGCGGTCTCCAGGGCTCGAC 474607 29 100.0 32 ............................. CAGGGCTTCACCACCCGCACCTGATGAGCAAC 474668 29 100.0 32 ............................. GTCTTCCATTCCTTGCGGGGGAGCAGCGTGAA 474729 29 100.0 32 ............................. CAGATGCGGCTGGGCGGTCCGATCACGGACCC 474790 29 100.0 32 ............................. TCCACGGCCGAGCAGATCAGCCGTCACCGCCC 474851 29 100.0 32 ............................. CCGTAGCGCTCCTCAACCTCGTCGAGGAGGTC 474912 29 100.0 32 ............................. GACACCCACCCCGGAGCCGTACCACCCCGAGA 474973 29 100.0 32 ............................. GCCGGGCTGACCGAGACGGAGTGGGACGCGTG 475034 29 100.0 32 ............................. GGGTGGGGTGCGGGCGGGCGCCGAGGTCGATA 475095 29 100.0 32 ............................. CCGCGCGCCCACCCCTGGGCGAGCGGGTGTTC 475156 29 100.0 32 ............................. ATCCGGGCCCGCGCCGGGGAACAGACCGGGTT 475217 29 100.0 32 ............................. CGCTTCCGAGTGCACCAGGTGCAGCGGTTCAG 475278 29 100.0 32 ............................. CCGAATCCTGGGCCACGGCGTCCGGGGAAGAG 475339 29 100.0 32 ............................. TCCCAGACCAGGGACGTCACGCCGTCGCTGGT 475400 29 100.0 32 ............................. TGGGAACGCCTCAGCGCCCACCCCACCGGTCT 475461 29 86.2 0 ....................TC.....GG | C,C,A [475484,475486,475488] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.6 32 CTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : CGTCAACCACGATGGCCCGGACGTCTACGGAGACACGAGCTGGTGACCGTCATCGTCCTCACCAACTGCCCCGCCGGCTTGCGTGGGTTCCTCACCCGCTGGCTCCTGGAGATCTCGGCAGGCGTATTCGTGGGCAGCCCCTCGGCCCGAATCCGCGACGTGCTCTGGAACGAGGTCCAGCAGTATGCCGGCCAAGGCCGTGCCCTCCTGGCCCACACCGACAACTCCGAACAGGGCTACACCTTCCGCACCCACGATCACGCATGGCACCCCGTCGACCACGAAGGCATCACGCTGATCCGTCGCCCTGAGAGTCCCGCCCGGGTCAGTGAAGAGACCACTTCGGAAGTAGGCCCACCACCTGGGTGGAGCAGGGCTGCCAAACGGCGACGCTTCGGTAGCCGATGAGGTTCTATGCCCGCTTGCAGGGTGATGTGTCGGAATCGATGAAAGTAATGAAAATGCCCTCCTGCCGCTCTTAAAGCCGCAGCTCACGGAGG # Right flank : GCGTCCGGGATCTGCGGCGGCCAGTGTGATGCCTGGTCGAGCGGTGGTCGGGAATGCTGCACGGGTCGATCTCCATGCGGCTGACAACGGAGGATGGTGTGACGAGCCCGGGGCCTGTCCGGCGATGCGTCGTCGGACAGGCCCCGGGCTCGGGTTGCGGCTCAGGCGCGTTCGAACCACAGCCGGCGGTCGGTGTCACTGACCTGCTGGTCGTGCGTGGCGACGAGGGCGCGGCCCAGGGTTACGTAGTGCTCGACCACGTCGGCGCCGAGGGCCTCGCGCGCCGCGGGACTGTCGAAGGCGTCCATTGCGTCGGGAAGCGTCGGCGGGAGGTGGGGGGCCACGTCGTCGTACCCACTCGCCGCGATCGGCGTGGGCGGCTTCACCTGCTTCGTCAGACCGTGCACGATGCTGGCGACGGCGCTGGCGACGGCCAGGAAGGGGTGCGCGTCGGCGCCGGGCACCCGGATCTCCAAGTGCCGGCCCGCGCCTTCGCCCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 587919-589226 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRIC010000066.1 Streptomyces sp. BV129 BV129_66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 587919 29 96.6 32 ........G.................... CCGTCATAGACTTCCGAGCACGTGTTCACTTC 587980 29 93.1 32 ........G...................G AGCCGCCGTCATCTCCGACAACTGACACGTTA 588041 29 93.1 32 ........G...................T TCGGCCTGATTACGTAGCCTCACGCTCCGTCA 588102 29 96.6 32 ........G.................... CAGAACAGCCGGTTGACGGCCGTCGCCCACAT 588163 29 100.0 32 ............................. CGGATTGACCCCCGCGTCTACACCCCGCAGCA 588224 29 100.0 32 ............................. CGCGTCAGGGCGTCCAGCACCTTCGGGGTCTG 588285 29 100.0 32 ............................. GTGCTGCTCACGGCGGGCGAGCGTGTGCCAGC 588346 29 100.0 32 ............................. ATGTGCGCCAGGTCGTTGCGGGAGTTGTACAG 588407 29 100.0 32 ............................. GAGGCGCTGCGCGGCTCCCGGGTGCCGACCAG 588468 29 100.0 32 ............................. GGCATCCGGCGGGCGAACATGGCCCGCCACTG 588529 29 100.0 32 ............................. GGTCGTGCGGACTGGGCGTCGTGGTCGGATCT 588590 29 100.0 33 ............................. GTCCTCCGGGCCGAGCTGTCCACCACCGGGAAG 588652 29 96.6 32 ............................T CGTGGGTGGTCTTTCCCTGGGCCCGTAGCTCA 588713 29 100.0 32 ............................. ACCAGCAACACTCGCGCCCTGTGGCCGGACAC 588774 29 100.0 32 ............................. AGCCTCACCCTCACCGTCACCGGCTCCACCTC 588835 29 100.0 32 ............................. CGGGCCGTCCTCATCAAGGGCGCCGACCAGGC 588896 29 100.0 32 ............................. AGCCACGCCAGAGCGACATGGTCGTACGCGCC 588957 29 96.6 29 ................T............ CAGCCGTGGGTGGACCAGGTGGCCGAGCC 589015 29 100.0 32 ............................. CTGTACGAGACCACCGTCGCGGCGAGCCTCGT 589076 29 89.7 32 .............T.........A....G GCGACGCAGAAGGCGCTCGACTCCGAGGCGAC 589137 29 100.0 32 ............................. ACCCACTTCGTGCTGTAGTCATCGGCGCGATA 589198 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.3 32 CTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : AACTAGAAGCAGTCGGAAACGCTGTACAGCAGGCCCTCACCGAATCCACCGGAATCCCGCTCGACGACCGGTTCCAGGTCCTGACCAACCACGACGGCGCGGCCGGAACGCTCCGGCACGGCACCTACCTTGAGATCCCGCGCGACGACGGCATCGTCTACATTGACATCACAATGCGGCGCGGCAGGACCGCCGAACAAAAGCGGCAGATGTATGCACAGGTGTGCCAGCGCCTCACGGAACAGACGCGGGTAGCACCCCACAACGTGTTCATCGTGGTCCACGAGAACCGTGAGGCCGACTGGTCGCTCGGCAATGGCCAAGCGCAGTACCTGTAGGTGTCCTGCGGCAGCCCCCTCACCCCGACCCTCCTGACACATAGTCATCCCGAGAAAGAGCCCCGTGACCCACGCCACCTGGGGCTTTTGCGTGAAATGTCGGAGTCGGTGAAAGTCATAGGAACGGGGCCTCGACGGGGCTAGAGTTGCAGGTCAGCGAGT # Right flank : CGAAATCCAGCGCTGGAACGAGCAGCGCAACGGCTGCTCCCCGCCAGGTTACGAACGCCGGACAGCTCGCTGACAGAGCTGCCGCTAGGGCCTGTTCGAGGGGTCATGTTGGGAACCCGTCCCCTGTCTTCTGGCTGCAGAGCCAGCCCTAGGCTGTAGCCATGCTGTTGATCTACGCCGGAGAACCCGCCGCTGACGCGCCCGTGCTGCGTACTGGTGGTGTCCCACTGGTACCGGATGAGTTCGTCTGGCCGGGGTGCCGTGAATGCGGTGGGAGCATGCAGTTCCTAGCCCATCTGCCGCTCGGCACCGACGTGTTCTCGGTGTTCGTATGCCAGAACGACCCCGGCCTGTGTGACGACTGGGATGCCATGGCTGGTGCCAACCGCGCCTTCCTGTTCAACGGCGATCTCTCCCCAGCCGCTGTCCCCGCCGAGGGCACGATACTGCTCGGCGCGGTCACCGCTCTACGAGGCCACCCCGCTGACACGCCGACTGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //