Array 1 39-983 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFZ01000116.1 Salmonella enterica subsp. enterica serovar Hindmarsh strain N30673 NODE_116_length_14141_cov_1.71232, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 100 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 161 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 222 29 100.0 32 ............................. CCCAACGAATCCATTTTTAAATGTCTTCGTAT 283 29 100.0 32 ............................. TTAATCCCCACGGCCAGGAGGTATTGATCAAC 344 29 100.0 32 ............................. TCTTTCAGGCATTGCGTGAAGAACTTCCTGAA 405 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 466 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 527 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 588 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 649 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 710 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGG 771 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 832 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 893 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 954 29 100.0 0 ............................. | A [981] ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTCCGATCTTAAATTTAATGGCGGATTTAATTAAACCG # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGTGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 507-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFZ01000010.1 Salmonella enterica subsp. enterica serovar Hindmarsh strain N30673 NODE_10_length_54794_cov_1.75053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 506 29 100.0 32 ............................. CGCTCCCTGACGCCGCGTTTGTCCCCTGCAGC 445 29 100.0 32 ............................. TAGGAATAGCTCAACCCGTTGATTATTTTGCT 384 29 100.0 32 ............................. CTAACAGGGTTAAATTTTCATTCACCGACAAC 323 29 100.0 32 ............................. CATCCAACAGACGGTTTGATCTTTATTGCTCA 262 29 100.0 32 ............................. CGCGGAGATGGCGTTATCACAATGGGCGTAGT 201 29 100.0 32 ............................. CCATCAGGCCGGATGCCTTCTTTCGTATGCAC 140 29 100.0 32 ............................. GCTACATAGTTGGTCTTCTTTTATCTCACTTC 79 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTCCTCTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGA # Right flank : GCCGGTAAATTTAATGGCGGATTTAATTAAACCGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18137-17071 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXFZ01000010.1 Salmonella enterica subsp. enterica serovar Hindmarsh strain N30673 NODE_10_length_54794_cov_1.75053, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18136 29 100.0 32 ............................. TGGATGGTAATCCTGTCGTATCAGGGATGACA 18075 29 100.0 32 ............................. ATAACGGCCTCGAATTGGCTGTGAACAACCTC 18014 29 100.0 32 ............................. ATTGGAACAGCATGGGTTGTCTTTGGTTTCGC 17953 29 100.0 32 ............................. ATCGATGTCTTTTACCGTATACGGCTCGCACG 17892 29 100.0 32 ............................. CGTCTCATTCATTTCCTGCCCGGTATTTGCAA 17831 29 100.0 32 ............................. CGTCTAATTGCGCGGCTTGACGAGATGATTGC 17770 29 100.0 32 ............................. TCGTGCGCAAACCAACTGAGTACGAAGTCAAA 17709 29 100.0 33 ............................. AATACTACAGGTATTTATATTAATCAATATGGC 17647 29 100.0 32 ............................. ATGCCATGTACGCCCCGTTTTTCTCAGCGACC 17586 29 100.0 32 ............................. TCTGTCAGGCTGGCGATCTGATTAATATTCAG 17525 29 100.0 32 ............................. CACCCTGGACGACTGGAATAATGATGCACTGC 17464 29 100.0 32 ............................. GCGAACAGCGACAAGCCGACAGATTTGATTAG 17403 29 100.0 32 ............................. CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 17342 29 96.6 32 ............T................ GAAGGATTACCACCCCGGCAGCGCTCACCCGT 17281 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 17220 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 17159 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 17098 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGTGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //