Array 1 1-761 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJTJU010000002.1 Lactobacillus intestinalis isolate A48_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. CTATAAAGATTTAAAGGCAGGTAAAACAGTGT 62 29 100.0 32 ............................. TAATAAGATTATTGATTCCATGAAGAAACGTC 123 29 100.0 32 ............................. TAGAAATCATGTTGATGAAGAAGATAACCTGA 184 29 100.0 32 ............................. AATAATTATCTGATCTTACCTAGCATTTTACC 245 29 100.0 32 ............................. GCTATTAAGCAGGTTCAAGAAATGGATATTGA 306 29 100.0 32 ............................. TCAACAGCCGGCACCATCTTATAAGGATTAAC 367 29 100.0 32 ............................. TCAACAGCCGGCACCATCTTATAAGGATTAAC 428 29 100.0 32 ............................. CACAATCTTCACTCCTACTTGCTCAATCTCTT 489 29 96.6 32 ............................C TAATGGAAGATTGTTTCAGGCTATCGATGAAG 550 29 100.0 32 ............................. TCAACAGCCGGCACCATCTTATAAGGATTAAC 611 29 100.0 32 ............................. CACAATCTTCACTCCTACTTGCTCAATCTCTT 672 29 100.0 32 ............................. AACCAGCAACAACAGCTTCAGGCAAGAATTCT 733 29 79.3 0 ...........G.AA...A....A..T.. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.1 32 GTATTCCCCACATGCGTGGGGGTGATCCT # Left flank : | # Right flank : TGGTCTCCCAATGACTCTAAACTTGTGGAAAATTATATTTTTGGAGGTTTCTTCAGATGAAGAAAAAGTGGATTGCTATTTTATTAGCACTAGTTTCTTTAGTAGTATGTGGTACAACAAGTACTCAAAGTGTAAAGGCTAGTACGCCGTCAATTAACTCAAGCTACTGGAAGCGTAATCGCAAAGTAATCGTGACTAGAAATGTAAAGATCTATAAAATGCGTACTGCTACAAGACAAGTAATTAAGTCTAATTCTAAAACTTTAAGGAAAGGCACGATAGTTTTTATAACCAGAAACAAATCTAAAGTTTGGATTTTTAGAGGTAGAATTCCATCCATAGGTGCAGCTTCTTTGAAAGGATATACTTGGGTAGCTGTTCAGAATAATAGTAAATGGATTGCTACTTACAGTAAAAGTAATGTAAAGAAGTACACTAAAAAATCTGTAACATCTTCTAAAACAGTGGCTTATGATGAAGATAATCAAGGAGATGAAGAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGCGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 46987-47350 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJTJU010000002.1 Lactobacillus intestinalis isolate A48_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 46987 30 100.0 37 .............................. ATCTCCTTGTTGAAATTTTTAATATGATTTTATATTT 47054 30 100.0 36 .............................. ATGCAACGGGGATGCTCGAAAAGCACTTGTGCTTAG 47120 30 100.0 36 .............................. AATTACCAAGAATACGTTAACAAACGTATTTTCGAG 47186 30 100.0 38 .............................. TTTTCCCAGTCAACGGCTGGAACAGCTTCACCCACATA 47254 30 100.0 37 .............................. GATGGTGAATATGTACTTCTTGCTAAACATTTAGGGC 47321 30 86.7 0 ..................G.A...A....C | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 97.8 37 GTTTTTATCTAACTTAAGAGGAATGTAAAT # Left flank : AATTTCCAAATTTGGGTCGACGAGAAGATTTGGCAAATTTTGAAGAGGTAAAGATTGTTGATATAGAAGAAAAAGATGAAGATATACCCGTAAATCATAGCGCGTATATACCAGTTCAAATGTCTGAAGATGTGGGTCTAGAAAATGATGGTGTTGGAAATAAAGGGACACATTATTATTTAAATAAGAATTATAAGTTGGTAACAATTAGAAAAGGTCAGACACAACGTCGTTGGAATAAAGTTGAGGCAATATATGCTTCTGGATTTGTAGTTTATAAATCATATGTTGATGAAGATGGCAATGTAGTATTCTTAGTTTAGAGCTGTCGATGTCCAATAATCAATTTTTCACCTGGGATCGACAGGTACTATTAAGCTTGATATGATAGCTTTTCTGAAATTTTATAGTAATTTTTATCAAAAATAGGATTATATTTAAGATGGTCGACAGAATCGGGACTGTAAAGTATTGATTTGTAAGGTCTGTCGAAGGGAACA # Right flank : CGAAACAACAGGATATTAGTTAGTAAAGAAAATTTAGAGAATAGTGATACGAGGTATATTGAAGTGCATCTTGCATTTACTCTATAAAATAGAAAGTGTGGAAAAATGAATGACTATTTAGGTAAGTCTTTAAATCAATCTGAAGGAAATCACTGTGAGACGATTGTAGAACATACTAATAATTTGTTGAGGCAATATAATTTATTGAAACAAACGTATCCTGACATATTTCAAAACTTTTGGCTTTGTCAGAATAAGTTCAATAATATGTTGGAGCAGCCAAATATTCATGGCAAGGATGACTGGCGACTCTTAGAAATTGCTTGTGCATATCATGATTTAGGTAAAATGAATCTACGCTTTCAGAAAAAAGTAAAGGCCGGGAAAAGTTATTGTGAAGATGAAATTCCTCATGCCTTGTTAAGTATTACAATGCTTCCAATTGAGGAGTTGAAAAAACAATATACAAAAGAAGAACTCATAGCCTTAATTTTTGCAAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 3 51862-52089 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJTJU010000002.1 Lactobacillus intestinalis isolate A48_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 51862 30 100.0 37 .............................. TCTTTTTATCGATTCGAGTATCCTTAGTGATAGTATC 51929 30 100.0 35 .............................. TTTAATGCGTTTGGTACTAGTCGCTTGAGGGTAGT 51994 30 100.0 36 .............................. GTCCCTAACATCAAGTAAAAAGCGGCTCTCGCATTA 52060 30 96.7 0 ....................A......... | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 99.2 36 GTTTTTATTTAACTTAAGAGGAATGTAAAT # Left flank : GCGTATGAGCCTTACATTATGGGATGGTAGTAATTATGTATATAATTTTGGTTTATGACATTGTAATGGATAAACAAGGCTCTAAAGTAAGTAGACATGTTTTTAAAATTTGTAAAAAATACTTAACTCATGTTCAAAATTCTGTTTTTGAGGGAGAATTAACCAAGGCACAGCTTGCAAGACTGCGAAGTGAATTAAATAGATGGATTAGAAAAGATGTTGATTCAGTAATTATATTTAAAAATAGAAATAAGAATTGGCTTGATAAAGAATTTATGGGACAGGATTTGACTGATTTAACATCGAATATTTTTTAAAATTAATCTGTCGATATGAGATATGTGGAAAAAACACGGAGATCGACAGATGAAAAGAATGCCCATATAATACTATTGTTGAATTATATCTAATAAGGTAAGTAATCTATATATGCTTTTTCGGTTAGGGCGACAGATATAGCTTTTGAAACTAGTGATATAGCAGGGCTTACGATGGCTAAG # Right flank : TGTTTACTAACACAACACTTATTCTTTCATTCCAAATGTTTTTCATGTTTTTATCTATTCTCTAAAATTCTAACTATAAAAGGAGCTCAAGAAAATTTTCTTGAACTCCTTTTTCTTTTATTTAGGCCAATTCTTAGCTAATTCTTTCAAGAAAGGTTGAATGACCGATCTTTGATTTTTTAGATAAGTACCATACAATTCGATATAATTGTCTTCATCCTTAATAGGTACTAAAATTCGATCATCATCGTCTCTTTCTTTATAACCAGTTGCTAAGGTTAGGTTCGTTCTAAAAACCGGAAAATTGGAATAGTGGGTTAATTCATCTAAAGCTGGCAGATCTTTTTGATATAAAAATTGTGCTTCTGGAATATGATCTTCAATTACTTGAACCCATGGCCCAATATCTTGAACTACTAAGAAGCTCAACCCGGCTAAATCTTTGAAAGTGACACTCTCCTTTTGGGCTAAAGGGTTCATTTTGTCAATGCGAACGGCTA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 4 203257-202372 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJTJU010000002.1 Lactobacillus intestinalis isolate A48_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 203256 29 100.0 32 ............................. TTTTAACTTTACGATGTTTCAGTATGTCAAGG 203195 29 100.0 32 ............................. AATAACGTAATTACCATCACCGGTAGTTGGGA 203134 29 100.0 32 ............................. AGAGAGTTTTGAATGATTGATCTACTCCATTG 203073 29 100.0 32 ............................. ACAAGTCCCATAATTACATGAATTGGGTTAAA 203012 29 100.0 32 ............................. TGACTTAGCATCTACTACTTCAAAAGGCTTTG 202951 29 100.0 32 ............................. CAATGGGGGATGGGTACTTAATCCCAGAAAAA 202890 29 100.0 32 ............................. GATAAATTGGCTTCAGTTGCACGTGTTTTAGG 202829 29 96.6 32 ............................A AAGTGTTGTAGCTGGCCACCCGGCTATTTTAG 202768 29 100.0 32 ............................. TACCGACCCTGACTTAATTAAAGCAATCAATG 202707 29 100.0 32 ............................. ACTTTGTTGACTCTTTTATTTACCAAGTCGAA 202646 29 100.0 33 ............................. GTAAATTCATTGTAGTTAATGAATCCGATAATT 202584 29 100.0 32 ............................. ATAAACCCAAAAGACATACAGTATGTTTTAGG 202523 29 96.6 32 ........T.................... CAATATAATCAGTCTTTAGCCAATGCTGAGGG 202462 29 100.0 32 ............................. TATTCAGCGTCTTTATCTTCAGTAGTGAAGAT 202401 29 86.2 0 .....................A..T.TT. | T [202375] ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.6 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ATTGAAGGCTGCTAATCGTGAAAAAACTCAAAATAATCCACTAGAGCTTGCGATGGATTTACCTGAGTCAACATGACCTAGTTTATTCAAACTTGGACCATAATCTTAAGGTAGTCAATGAGGACTTTTTTTATTTTAATATGGCGGTCAATTTTCTAATAAAAAAATTGCTCCTTTTCTTTCAGAAAGAGGGTATGGCCCAATCTCCAATTGCTCGGTGAAATTATTGCTGAAGATGGTAGTTGATAAAAGTGATGCGGAAATTGTATAGTTCAATAGATGTAGTAAAAGCCCTAACTTGTAATAATGATCTTCATAAGAGTGCTTGTATTTTCTAATTATTTAATATAATAATTTAAGATTGTTATTATATGAGATAGCTATATATAGAAGAATATTTGATATAATTGAGTCGATGATTTGATGGGGAGGAAGTACAAACTAAAGAAAAATTGCTTTTCAGCAAATTTGAAATGGCTTAATGACGGCGTTTCTTTAGT # Right flank : TGAGGATGAGTCCTCAACAAGAAAAATTATAGAGCTATCAACATGATTTCCTAAAGGTTGTTTATGGAAAATCACTCTAAATGTCTCTAAAATGAAGATGACATGGATAGAAAGGGAGAACAATTATGAACGCAATTTTTGAAAGAAGAGCTGTTAGAGAGTATAGGGATCAAAAAGTTGATGATGAGAAAATCAAGAAACTAATTGAATCTTTTCAAGCAGCTCCGTGTGCACTCCATCAAACGGATGTGATGGAATTAAGTGTAATTACGGTTCCTGAATTGTTGAAAAAGTTAGAAGAAAAGACTAAGAATTCGTGTTATAACGCACCTTTGGTATTTATGATTAATACTAAAAAAGATAGTCAATTTGGTGAGAGGGATGCTTTTGTTGCTGCTGAAAATGTGATGGTTGAAGCATTTGACTTAGGCTTAGCTTCAGTTTACGTAATGGGTGGTGTAATCGCTCTTAATAAATTTCCAGATTTACAAAAAGAATTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 313245-313823 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJTJU010000002.1 Lactobacillus intestinalis isolate A48_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 313245 29 100.0 32 ............................. TTATTAAATCCAGATTGTCCTTTTGATAATCC 313306 29 100.0 32 ............................. CTAGGTTCGAGTCCTAGCGAGTCTGTTGCCAC 313367 29 100.0 33 ............................. TCCTCTTTTTCTTCCTCCAGCCGCTTAACTCTA 313429 29 100.0 33 ............................. AACTTCTTCTTCAGTCACGTCACGCGAAAAGTA 313491 29 100.0 32 ............................. AGCTCAGTAGAAAGGAGAAAGCATGGCATATA 313552 29 100.0 32 ............................. CTATAAAGATTTAAAGGCAGGTAAAACAGTGT 313613 29 100.0 32 ............................. TAATAAGATTATTGATTCCATGAAGAAACGTC 313674 29 100.0 32 ............................. AATAATTATCTGATCTTACCTAGCATTTTACC 313735 29 100.0 32 ............................. GCTATTAAGCAGGTTCAAGAAATGGATATTGA 313796 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================= ================== 10 29 99.7 32 GTATTCCCCACATGCGTGGGGGTGATCCT # Left flank : AAATTTCTGGGTTAATTAATACTTCTAAAGATTTACTTCCAATAATTAAAAAGAATAATAAGTTTCTTGATAATTATAAGTTGAGTACAGTATTGTCAGAATATAAAATTGAAAATCAAAACCCGCATCATGCAGATTTTGATGCAAAAAGTACGTATCAATTAGCCTTGAAATTGATTGATGGAGGAAAATTAAAGCTTTAAAGTTTTCACCGGTAATGAATTTAGCTTTAGATAATTTTCAAAATTAATTTGAACCATTGTATACGATCAATTGGGAGAGGTCTTTCTGAGTATTCCGGAATTATGAGTAGTTAAAAATAGGTTTACATTTAAGTAATACTATAACTTGAAAAAGCACTTAAAGAAGTAAAAATATTTGTAATTAGATCTCTATAATTTTATCGGAATATAGGTATGCAATCTAGTATTATGAAAGAAACTAATGAAAATTAGAGATTTTGAATTATAGAAATGGCTATAGATCGGCCTTTGTTTAGT # Right flank : | # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGCGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //