Array 1 1781-2076 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPVJ01000015.1 Acidibacillus ferrooxidans strain ITV01 contig0018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1781 32 100.0 33 ................................ ATGAAATAGCGATCTTTTTATCACTTGCAAAAG 1846 32 100.0 37 ................................ AAGGAGTCTAAAAATTCAAGGGCTTTAAAGTATCGAA 1915 32 100.0 34 ................................ TTAGCCCACGCTACACCCTGCCGGAACATCTGCA 1981 32 100.0 32 ................................ AAGGCGACAGTGCCGGCAGCATCATCAATAAC 2045 32 96.9 0 ................G............... | ========== ====== ====== ====== ================================ ===================================== ================== 5 32 99.4 34 GTCGCACCCCGTGCGGATGCGTGGATTGAAAC # Left flank : ACTCGAAGACTATCCGCCATTTTTCTGGAAATGAGGGTATCTTATGATGGTCTTGATAACTTATGATGTGAATGTGTCGACGCCAATAGGGAGAAAACGTTTGCGTCATGTTGCTAAGCAATGTCAAAATTTCGGTCAGAGAGTTCAAAACTCCGTTTTCGAGTGCCTTGTTGACCCCACTCAATTCACCCAATTAAAGCATCGATTGGAGGCAATTGTAGATCCAAAAACGGACAGTCTCCGATATTATTTTTTGGGAAGTAACTGGAAGAGGCGTGTTGAACATTTTGGTGCCAAGGAAACGTATGACCCCGAAGGTGTCCTCATTATCGATGCGAACCCATAGTGCTCATTGATTTACCTAGATTTTCGCACCTCAGTATTTTAAGCACTCCACCACAATTTTTTCCACGCAGACTGGTTCAGGGAATCCGTTTTAATCGGGGTTCGCATTTTTGGGTCATAAAGAACTGTATGGTAAAGTGTTCATAGGTACCACA # Right flank : TCAGACCTCGATTT # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGTGCGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 327-503 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPVJ01000051.1 Acidibacillus ferrooxidans strain ITV01 contig0065, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 327 35 100.0 37 ................................... CCGGCAGATGCATCTCTATGGGCAAGTCCGTACCAAT 399 35 97.1 35 ........................T.......... CGGGCAATACATCGTCCCACAAGCGTACTAAGGGG 469 35 97.1 0 ...................T............... | ========== ====== ====== ====== =================================== ===================================== ================== 3 35 98.1 36 GTGACGACAGCTGTGATGCCGAAAGGCGTTGAGCA # Left flank : ATACGAAAAATATAATTTCTACTGGAAACCGGCAGGAATCGGCAGTACGCAACGCGAAAAGCCTCCAAAGGGTCCATCCTAAGGAGGCGATGCCACTGTGACGAAACAGTGGGTACGGGAGTTCATCCAGTACTCTTCTAGAATATACGGATTGTCTCAAATGATCAAGCATGCGCGAGATGGACGAAGACAGCCTCAGATTCCTTCGTCTGTGATTTTTACTGTTTTGTTGGCTGGGTTCGCACTGCGAACGCCAAGCATGGAGGACTTAGAGCGGCAGCTTCGCAAGGGGCGGGATGGATCGTGCTCCCGTCCACCAAGTGATAG # Right flank : ATTACGCAGATGAGCAAGGAAATCTGTATTTTAAGACGGAGGAAGAACTTCGATTCGGGGGGCAACAACAAGATCTTTATACCACTTTCAACTTCTAATCTCGGTTCTTTCAAAATGAACTAGGCTATCCGAAACGGGCATACGGGTAGCGTGACTGATTTTTGGATTAATGTCAGGCGAATAAAAACAGCGCATTTAGTACCTTGACGAGCGATTTTATGTCAATCGCCTGCTGATACACGTAACAGACGTGATTACCAAGGTACTCGTTTCGGATGCGACGTACTACGCACGTCCTTGTATTCTTCATACACCATGTATCGTCGATGAGTAGAAAGACAATCTGCTTCCCATCTCAGGATGCTTCTTTTGTTTACAGCAAATGAGTTGCTGGAGAAGCCGTTGTCGTTGGCGATTCATGGGCCAATGATTCCAGGGCGACTCGGAAAAAAACCTGGTCATATTATTCAAATCCCACTGTGTCTTGACTGACGTCGCAT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACGACAGCTGTGATGCCGAAAGGCGTTGAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 202177-202015 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPVJ01000006.1 Acidibacillus ferrooxidans strain ITV01 contig0007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 202176 31 100.0 34 ............................... TGCCCATGACAGATTTGTCACCCCCGAATTACCG 202111 31 100.0 35 ............................... TTCTTAGCGATATATCCTCAAATGTCGCGAAAACG 202045 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 3 31 100.0 35 TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Left flank : ATCCCCAGTGACGA # Right flank : TTTTAGGAAAGTACACCATAACTTCATTCAGGAAGTCGCACTGCATATTCCGGAGTAAATCGTCCACCCATTCTGGAAAGTTTCGTCCACCCTCGACCTGAATCTTTGACCCTACAGGAATCGACTTTCTTCTGGAGAATTCGTCATCGAATGGCATCCAGAGAGGAGATTTGTGTATGGCAAGACGGAGGGTTCCTATGCATCACATCCGCAACATCTTGCGCCTGTCCTTTGAGGCTCATCTCAGTAACCGTGCCATCGCCAGTAGCATCGGCGTTTCACACAGTACGGTAAAAGACATCTTGGAGCGGTTTCAGTTCTCGGGCTTATCCTGGCCGCTGCCCGATTCACTTGACGCGCAGGCACTTGAAGCGGCTCTCTATGTCAAGCCCATCGGTCGCCCATCCGACAAGCCAGAGCCGGATTACCTCTACGTGCACAAAGAGTTGCGACGCAAGGGCGTCACGCTCCAATTGCTGTGGGCCGAGTACAGGGAGCAG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGCGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.70,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //