Array 1 19222-18893 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUP010000008.1 Erwinia amylovora strain Fb-97b Ea_Fb97b_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19221 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19161 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 19101 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 19041 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 18981 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 18920 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTTCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30791-28685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUP010000008.1 Erwinia amylovora strain Fb-97b Ea_Fb97b_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30790 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 30729 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 30668 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 30607 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 30546 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 30485 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 30424 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 30362 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 30301 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 30240 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 30179 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 30118 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 30057 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 29996 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 29935 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 29874 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 29813 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 29752 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 29691 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 29629 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 29568 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 29507 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 29446 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 29385 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 29324 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 29262 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 29201 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 29140 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 29079 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 29018 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 28957 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 28896 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 28835 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 28774 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 28713 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 43800-41698 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUP010000008.1 Erwinia amylovora strain Fb-97b Ea_Fb97b_contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43799 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 43738 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 43677 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 43616 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 43555 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 43494 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 43433 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 43372 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 43311 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 43250 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 43189 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 43128 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 43067 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 43006 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 42945 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 42884 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 42823 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 42762 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 42701 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 42640 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 42579 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 42518 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 42457 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 42396 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 42335 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 42274 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 42213 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 42152 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 42091 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 42030 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 41969 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 41908 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 41847 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 41786 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 41725 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //