Array 1 633551-635561 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR822010.1 Streptococcus thermophilus isolate STH_CIRM_29 chromosome STHERMO, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 633551 36 100.0 30 .................................... TTATTTGATAGGAATGTCAGTAATTTTTGA 633617 36 100.0 30 .................................... AACATTTCAGCGCTTACTTATCAATCTAAT 633683 36 100.0 29 .................................... TGGCAGCAGTGAATTCGATGCCGAGCAAT 633748 36 100.0 30 .................................... CCAAGGAATACCAGGTCCTAAAGGTGCCGA 633814 36 100.0 29 .................................... CTAAATGAACTACAACAACAGCTTGATGA 633879 36 100.0 30 .................................... TACCTTAACATTTTCGATATTTTTCAAATT 633945 36 100.0 30 .................................... TTTGACTGCTTTTTTATCTGAATTGTAATT 634011 36 100.0 30 .................................... CAGTAACCTAAAGCTCTATCAAGCCTATTT 634077 36 100.0 30 .................................... CGTCAAGCTGACAGACCTTGACAACAAATC 634143 36 100.0 29 .................................... AGGCATAAATAACATTGATAACCCTAACA 634208 36 100.0 30 .................................... GCCAACGAGGTCAAATATGTCAACGGCATT 634274 36 100.0 30 .................................... GAAATAGGAACTTCAAAGGTAATTTCTTTA 634340 36 100.0 30 .................................... TGTAAGTAGTCAATATTCACTTCTGATAAC 634406 36 100.0 30 .................................... ATTTAGAGCAAGGAAAGCAGTACATCATTA 634472 36 100.0 30 .................................... CTGTAATCATTTTTAAATCAGGATTATCAA 634538 36 100.0 30 .................................... TTAAATGTATCCTAGTATTTTTGTACTATA 634604 36 100.0 30 .................................... CCATCAGCCAACTGTATCGGCTACTTTCTA 634670 36 100.0 30 .................................... ATGCTCTTGGCGACTATCTCATGGAGCGTG 634736 36 100.0 30 .................................... AGGAAAAAACCCAAACAACCCAAAATGTTA 634802 36 100.0 30 .................................... TTAGCGGTGATTGGAATAGAATAAGCGAAT 634868 36 100.0 30 .................................... CTTCTACAGCAGTTTAAGACACATTATCAT 634934 36 100.0 29 .................................... CGTATCGAAAACGGCGATAATCCAACAGT 634999 36 100.0 30 .................................... TCTAATTCTGTCACCACGACTATATCGCCA 635065 36 100.0 30 .................................... CTGAAACCTTGTTTTGAAGCGCTTGGAAGT 635131 36 100.0 29 .................................... GTATTAGTAGGCATACGATTATGGAAGTA 635196 36 100.0 30 .................................... GTCAATTGATACTGCAATCTCTTTAACATT 635262 36 100.0 31 .................................... ACTTCAATATGGTCAACATCTTGATCACCGA 635329 36 100.0 30 .................................... TAATATGTCGCTCTACTGATTCCAAAACGG 635395 36 100.0 30 .................................... ATGAATTACATTCATGATTTTATCGAGTTT 635461 36 100.0 29 .................................... CGTGCCATTGTTTCGGTCGGACGTGGGCA 635526 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAACATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATGTTCTCAGACACCTGATAAGGAACTATTACAGAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACATCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGATGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //