Array 1 82919-81972 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_BIFA01000011.1 Escherichia coli strain 96-J77-A entry11, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	=============================	==================================	==================
     82918	    29	 100.0	    32	.............................	TGGCAGATCGATTTTACCGCCAGAATGACAGG  	
     82857	    29	 100.0	    32	.............................	ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC  	
     82796	    29	 100.0	    32	.............................	ACGACCAAATGATCTACGCGTATTGCCACCTC  	
     82735	    29	 100.0	    32	.............................	TTAGGCACAGAAAAAAGGCTACTCAGCGAACT  	
     82674	    29	 100.0	    32	.............................	TATCGACCCCCTTTCTCACGCATCGCCATCGT  	
     82613	    29	 100.0	    32	.............................	TTAACGTCTGGATCCTGTGTGCCATGGACCGT  	
     82552	    29	 100.0	    33	.............................	CCAAAAATGCGCCCCATGCGCACAAATTCGCGC 	
     82490	    29	 100.0	    32	.............................	CCCCGCACACGTAAAGGCGTCGGCATGGATGC  	
     82429	    29	 100.0	    32	.............................	CCGAGGCCGCAGAACGCCGTGATATTGCGTTC  	
     82368	    29	 100.0	    32	.............................	GAAACAGAATCATCATTGATTACCCGCGAAGA  	
     82307	    29	 100.0	    32	.............................	TTGTCGGGGATCTGTTCAAACTGACTCATTAG  	
     82246	    29	 100.0	    34	.............................	GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC	
     82183	    29	 100.0	    32	.............................	CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG  	
     82122	    29	 100.0	    32	.............................	TCGCTATTGCCGGTAGTGTCGCTGATAGACTC  	
     82061	    29	 100.0	    32	.............................	CGGCTATGGAATTTATGGAGAAGTTTGGTTTT  	
     82000	    29	  96.6	     0	............T................	|                                 	
==========	======	======	======	=============================	==================================	==================
        16	    29	  99.8	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                  	       

# Left flank :   GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT
# Right flank :  GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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