Array 1 6242-7246 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHDZ01000028.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N43462 N43462_contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6242 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 6303 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 6364 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 6425 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 6486 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 6547 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 6608 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 6669 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 6730 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 6791 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 6852 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 6913 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 6974 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 7035 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 7096 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 7157 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 7218 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCAGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36-614 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHDZ01000038.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N43462 N43462_contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 36 29 100.0 34 ............................. AAACGGTAGTGTTTTAAAACCGTTTCAATGTGTC 99 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 160 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 221 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 282 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 343 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 404 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 465 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 526 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 587 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================== ================== 10 29 97.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGCCACGTTCGGCGATGTTGGCCCCATCGGTCCAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 214670-213786 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHDZ01000007.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N43462 N43462_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 214669 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 214608 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 214547 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 214486 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 214425 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 214364 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 214303 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 214242 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 214181 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 214120 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 214059 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 213998 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 213937 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 213876 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 213815 29 100.0 0 ............................. | A [213788] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 201-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHDZ01000067.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N43462 N43462_contig_73, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 200 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 139 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GAAGATCCTGTCTCTTTTGTGCGGAGCGCCGACGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [30.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 447-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHDZ01000066.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N43462 N43462_contig_72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 446 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 385 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 324 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 262 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 201 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 140 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 79 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTGGTTTAATAGTATCGGGCAGCATTTTACCGAGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 854-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHDZ01000070.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N43462 N43462_contig_82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 853 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 792 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 731 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 670 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 609 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 548 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 487 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 384 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 323 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 262 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 201 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 140 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 79 29 96.6 0 .....T....................... | ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 99.5 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GCCATTGCTGACAGGCAGTGATTTCAATGTGTCGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7-584 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHDZ01000071.1 Salmonella enterica subsp. enterica serovar Senftenberg strain CVM N43462 N43462_contig_90, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 68 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 129 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 190 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 251 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 312 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 373 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 434 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 495 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 556 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCGACG # Right flank : GTCGTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-5.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //