Array 1 317593-316832 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWS01000001.1 Saccharomonospora viridis strain ATCC 33517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 317592 29 96.6 32 ............................G CCGGTGTTCAGGTGGTAGGCGGGGTTGGTGCT 317531 29 100.0 32 ............................. TGCTGATCGAGGACGGCATCCCGGTGCTGAAG 317470 29 96.6 32 ............................T ACCGGTACAAGGGCAAGACGCAGCGGCCACCG 317409 29 100.0 32 ............................. CTCGTCCAGCATTTGGGTGGCGATCCGCTCCA 317348 29 96.6 32 ............................T ACGGGCGCTACATGGCCCCTGATCCTGCCGCC 317287 29 100.0 32 ............................. ACCACCCCGGCCTCGAACAAGCGAGGGCGGTC 317226 29 96.6 32 ............................G TTCGTTTGCGTGGGGGTCGCAAAGCACTAGGT 317165 29 96.6 32 ............................G GTGAACCCACCCCTGCTGGCGGTAGTAGTTAT 317104 29 100.0 32 ............................. CACTGTTGGCCAGTCCTGCGGCCTCGGTGACC 317043 29 96.6 32 ............T................ GACTCGATGCCAGACCATCGCCATGGCGATTC 316982 29 100.0 32 ............................. TCCCGGTTGGCTGCGTTGTGCGCCTCCATCGC 316921 29 96.6 32 ............................T TCTTCCCGCAGGTCGCCATCTTTGGGCTTCCG 316860 29 89.7 0 .........................TTT. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.4 32 GTCGGCCCCGCGCACGCGGGGATGGACCC # Left flank : CGAGAACCGATTCTGCGCTGACTGCATCGACCACTGCCTCACCGACACCCACCACGACCACTGGTGCCCCATCGACACTTTCGCCCGAGCCCACGAAACACACCCCCAAAACAAGGCCCGTATCGATGTATGACTCACCCGTCGCCGTGTTCACCCCACCGCCCGAGACCGAGACCGAGCAGACCATGCAGCTCTGTCTGCCGGACGCCTGGCACCAGCCCGACCGCGACCCCGATCCCCCACCCAAGGACATGATCACCGAAGCCCACGCAGCACTACACCAGTACGACGAGCCAACCCCGCCAATCCTCCGGGCAGTCCTCAACGGACTACGACGGTAGCTCGTCCCATAGACCTGGTAGATGCGGGACGGAAGGAGCCCGCATCCTGACGCTGTGATCCCGAACGATCGAACAGCCACGAATGCGCACCCCGCCTGCCCCGTCGCCAAACTGAATGAGAACTGCCCATCGACCGGGTAAACTCCCAGGTCAACAAGT # Right flank : TGGGTTCGCTGGCTCGATCAGCTTCGGACTCACGTTGGACGTGGCCACACGTCGTCCCACTGGGCGAGCTACCACGCCGACGGCGGGCCATGGTGCGAGGCCATCACGGCACGGTGACGGAAAGCGAACCCCGGCTATGAGCCGATATCGAAGGCGCCGCCAAGCCGTGGCGCGAGCTCGGCGAACCAACATGGGGCGGACGGGTCCAGTCCCACCGTCACACCCGACCGGAAGCCGGTGTGGTTCGACCACCCCGACGGCATCACGTGGCCATGACCACGGATGAGGACTGAACCAACGCGAACACCGAACAGGTCCCGGCACACCTACGCCGAGGCCTGTTCGGTTGCGTCGGTGGTTGATCAGATGTCGAATTCACCGTTCTCGACATCCGTAGCGAAGGGGCGCCACTCGCTTTCGGTATAGGCGACTGTGCCAGCGTCGGCCGCTTGCTGTTGCGCACCCCCACGCCTCTTCATCGATCGTATGAACGAAGCAAT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 320231-319958 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWS01000001.1 Saccharomonospora viridis strain ATCC 33517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 320230 29 96.6 32 ............................C GTGCAACATTGTCTCTCCTTTCGCGGAGTGGC 320169 29 96.6 32 ............................T TCGAGCTTGTCGCTCAACTACAACGATGGCGA 320108 29 100.0 32 ............................. TCAGCGTGCTCATGCGGCCCTCCAGAACGTCG 320047 29 100.0 32 ............................. AAGAGATGCGCGGCATCCTCAACGCTGGACAC 319986 29 93.1 0 .......................G.A... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTCGGCCCCGCGCACGCGGGGATAGTCCG # Left flank : CGGCAACTGCGCCCGCCTCCCGAACCCCTTCTTCCGGTCGGCGCGGGTCGAGTACCCCGAGCCCCTCACCAGCTCCCCGTGCCGACCGGACCCCACAACACAAAAGAGCCCCCACACGCTCAACCCAACCACCGCCAAATCTCGGAGAGCTACGGGGCTCTTCCCTTTCCGGGCCCCGGGGGATAGGCGTCCCGGGCCTCGCGTGCGTGGCGAAAGCCGCCTCTCAGCGACCAGCTCGCCGTCCCGGCCCAGTGGCACCCACCATCAGAGTCGACGCCGAGCTGGAACCACCGATTCAAAGAGCGACGAGCACCCTCAGCAAAAACACGCCCCGTTCAACCAACCACCTATCTGCACGAACACTCCAACCAGCCCCATACCCTGAGGAGGCGGTGGTCCTCGAACAGGTCGGAAGGTAAGGGATGAGCAACCCCTGCCCGCCCCGTGTCAGACTGAATGAAAACCGGCCGTTGGTCGGGTAAACTCCCAGGTCAACAAGT # Right flank : GGTTCGACACGTGGCGCGAACACTAAACGGGCCCCCAACACTTACGCCGGGGGCCCGTTTGGGTGGGTCAGCAGTCGAACCGGGAATTAGATGTCGAATTCGCCGTTTTTGACGCCCAGGATGAACGCCTTCCACTCGTCCATTGTGAACATGTGCTCCGGCTTTGTCCGGTCCTTGGTGTCTCGCAGGTGGACCATTTCGCCGTCGAAGCGGGTCTCCACGCAGTTGCCCTGGTTGCCGCTAAAGGACGACGTACGCCAGGTGTTGTCCATCATCAGGTACTCTCCACCTCATCGGATAGCTTCGCGATGAGCCCCTCTGTGGCGGCGGGGCTCATCGCCTGCCGGCGGATCGTATCCACCGCAGACATGTAGTCGCTCACGTCTCTGCGCTCGGTCAGAGTCGTGGCGGACCGGTAGTGCTCCAGCTGCACCACCGAGGGCCCTTTCTCGAACTCCAGCAGGATGAACGGTCCTTCGAGTGCGGGCGAGTAGCCTCCG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATAGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 323259-322744 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWS01000001.1 Saccharomonospora viridis strain ATCC 33517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 323258 28 100.0 33 ............................ GCCTGCGGAGCGGCAGACCTGGCAGATTTCGTT 323197 28 100.0 33 ............................ CAGGTCCAGTACCTCGGCTCGGATCGCGGCGAG 323136 28 100.0 34 ............................ CGTGGGGCAAGCTCAGCTTGCTGCCGTATTCGTC 323074 28 100.0 34 ............................ AGCTGTCATCAGAGGGACGATGTAGGCAATCCCC 323012 28 100.0 33 ............................ GTCGTGCCCGAATGTGTTGCCGGTCCGGGGGTT 322951 28 100.0 30 ............................ TGCAAGGGTGCGCGTGAGCGCATCGCCGAG 322893 28 100.0 33 ............................ ACAGGGGCTATCGGGAGCGCGGTCCGCTGGGTG 322832 28 100.0 33 ............................ CTTGGCCCTCAGCATCGCGACCACCTCAGCGGC 322771 28 96.4 0 ...................A........ | ========== ====== ====== ====== ============================ ================================== ================== 9 28 99.6 33 GTCGGCCCCGCACACGCGGGGATAGACC # Left flank : GCGCCCTGTGCGGCACCGAGCCCGTCGCCTGTCCCCATGCTGAGGCATGGATGGTCGAAAGCCACTTTTGCGTCGACTGCATCGACCACTGCCTCAGCGATGCCCGCCACGGCCACTGGTGCCCCGTTGATGCCTTCGCCCACGCCCAGGAGACAGGTTCCCGAGGTCGCGGCGATGCATGACTCACCGGTCGCCGTGTCCACCCCACCGCCCGAGACCGAGGCCGAGCGGACCGCACGGCTCCGGCTACCGGATACTTGGCAGTGGCCCGACCGTGACCTCGATCCCCCACCCGAGTACGTGACCGTCGAAGCCCACGCGGTACTGCACCGGTGTAAGGAGTCAACCCTGCCGATCCTGCACGCCATCCTCACCGAACTACGACGACAACTCCCCCACACGGCCCCAAAGACACCGGGGAGTGGAAGGAATTCCCTCCTGCCGGTGGCAGACTGAATGAAAACCACTTGCTGCCCGAATAAACTCCCAGGTCAGCAAGT # Right flank : ACGGCCCCCCCGCACCGCATGGTGTCGGGGGCCGTTTCACGTGTTCAGTTGCGTACTTTCCGCTACGCTCTCAGATGATTCTCTTCGCGGATATCGTGCCCCCGGACTAGGCCCCGGGGGGCTTTCGCGAAGAGGGCACGACTCCGCGGAGGGTGTGGGTGTGATGACGCCGCAGCCAGACGCCGACCTGCCCATCGGTCGGCGAATCCAGCGCTACCGCGAACGCGCCGGCATGTCCCGCCCGGTACTGGCTGGGCTCGTCGGCCGCTCGACCGAGTGGGTCAAGGCTGTCGAGACGGGACGGTTGCAGGTGCCGAAGCTTCCGATGCTGCTCAAGCTCGCCCAGGCTCTCGGCCTTGAGGACCTCGCTGATCTCACGGGAAACGGCCACGCCGTGTCGGTCGAGCGGTTCGCAGGCTCCCGACATGCCGCACTGTCGGCCGTGCAGACCGCATTGACGCAGTACCGCATGACGCCTGCTGGTGATCCACCGAGCGTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 4 326322-325621 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWS01000001.1 Saccharomonospora viridis strain ATCC 33517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 326321 29 96.6 32 ............................T TTCCGCGCGACTTCCTCGCTCGGTGACATGCC 326260 29 96.6 32 ............................C TGGGGAGGTCAAGTGTCGATCGGAGTCTGGCG 326199 29 96.6 32 ............................C TCGCGAAAACAGGGCTGGTGTCGGCGGCGGTG 326138 29 100.0 32 ............................. AACAGCTCGTCGTCCCGCTCAGCCTTGATGAT 326077 29 100.0 32 ............................. CTGCCGAGGCCGCTAGCGCGGCTGCCACGTCG 326016 29 93.1 32 ....................T.......T TTCGGCAACGTCTCCGTCAGCGGGCACGGCAA 325955 29 100.0 32 ............................. CAATCGGATTGCGTCCTCGCGATCCTTCGCGA 325894 29 100.0 32 ............................. TTGACGCGGGTGGTATCGGCGGTGGATCGTCC 325833 29 96.6 32 ............................C TCCATGCCGCCCTTGGGATCGATCACCCACAG 325772 29 93.1 32 .................C..........C CATCGGGATGCGGGTGGTGCTCGGGTCGAGCG 325711 29 93.1 32 ..............T.............C GGGAGTGGAACCCCGGTTTTCACGAAGGCCCC 325650 29 96.6 0 .........................A... | A [325626] ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.9 32 GTCGGCCCCGCGCACGCGGGGATAGTCCG # Left flank : CCTGCCGCTGTGCGCGCCGTTCCTCGGCCACCAGAACAGCTTGCCGGCTAAGTGCAGGAGGAACATCAACGTCAGCCCGCTACCCGATGACGCCGACGAAGAGGAGGAAGCGCCGCCGGAAGGTTGACACAACCCGGCGATGTCATGAACCGGCGACGCACCCTGCCGAAGCGGATATACGGCCGTCCATCCCGGCATTCGACCACCACAGCGGTATCCAACATGCGAGCCAACAACAAGTTCCGGTGCCCACCACTTGGCGACGCCGACTTCCCCTACAACACTTCCCACCAGCGCGGCTTCGAGGGGAGCAGCACAACCACGTACTGGCCCCTACGTCGGCATCCGACGGACATCGGGCACCGTAGAGGACACCACCGACGATTCCCGAAACATGCGGAAACTGCCTTCCCGGAGACCGGATGACCACGCCCTACCCACTCTGTGTCAGACTGAATGAAAATCGCTCATTGGCCGGGTAAAAGCCCAGGTCAACAAGT # Right flank : CGTGTGACACGTGGCGCGGCCCTCGGTGGCGTCACCACGGATGAGAGCTGTATCAGTCCGAGAACGTCAAACGGGCCCCGACGTTGGTGCGCCGGAGGCCCGTTTGGATATGTGAACGGGTCGATCAGATGTCGAATTCGCCCGCCTTCACACCGGCGACGAATGCTCTCCATTCGCTATCGGTATAGCGGATAATCGCGTCGTTAGGCCGCTTGCTGTTGCGCACCTCCACACCGCCCTCGACGCGACGGAACTCCACGCAGTTGGTCTCCTTACCGGAGAAGCTGGACTTGCGCCAACCGTTGTCTTCGCGCTGTACGGTCATTCTGTAGTCTCCACCTTGTCGATGACATCCGCGATGAACCTAATTGAGTCGGTTGGGCTCATCGCCATCCGGTCAAGCTCCGCCCGCGCTTCCTTGTACACCTCAACGTCATCCGCATCCCGCAAGAACACGCTCGACCGCAGGTGTTCCAAGTGGACCACGGGTGCCGCCCTGT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATAGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 770956-770382 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWS01000001.1 Saccharomonospora viridis strain ATCC 33517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 770955 29 100.0 32 ............................. AGGTGCCGCACGGTGGTCTGCAGCGCCTCGCC 770894 29 100.0 32 ............................. GTCGACCACCACCGCCCCAACGCAGGAACGCC 770833 29 100.0 32 ............................. AGAGGACATGTCCCCTCCTTCAGTTGGGGCGG 770772 29 100.0 32 ............................. CGGGCGGTGGAGCTGCTGCATGCCCCCGACCC 770711 29 96.6 31 ............................G GACCGGCGCACTCACCGCATGGTCGGTGTCA 770651 29 96.6 32 ............................T CCAGTCGACGCACGCAGGAAACGCTAGATCTG 770590 29 100.0 32 ............................. CGGTCGTGGTGGGTCAGGGCGTCGGTCAGGCA 770529 29 96.6 30 ............................G GGTCGCTCGTCAGACCCTCGCCCGCTGGGG 770470 29 100.0 32 ............................. TGCCACAGGTGAATGTTCACGGCGCGCGCCTG 770409 28 86.2 0 .....................-..A.TA. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 32 GTCGGCCCCGCGCACGCGGGGATAGTCCC # Left flank : TCGATATGCACGATCGACGGAGAGTCGGCGAAGTCGAACAGGATGAAAGGACCGGACAGGCCAGGATGCCATCCACTGTCTGTCGGCACTACCTGCACGGTGACCGACTCGGAGTCGGTCATCTTCAGCACGTGTCGTAGCTGGTCAGCCATCACCTCGGGGCCGCCGATCGGGTTATGTAGAGCGGCTTCGCCGATCAGACCCGTGAACACCGCTGGTCGGCTACGGGTGATCACATCCCGTCGTGCCATTCGCATCATTACGCGCGGCTCGACCTCCCGCGCTGGGAGATCACCATTCGCCAGGATCGCGCGAGCGTAGTCGGACGTTTGCAGCAGCCCTGGCACCAGTAGCGGCGACCAGTCGGTGTTATGTCTGCCGGACACGTGGCGGTGGCCCCCGAGCGGATCGAGCAGCGACGAATTGGTAACCCCTGCCCACTCTGTGTCAGACTGAATGAGAATCGCACGGAAGCCGGGTAAACGCCCAGGTCAACAAGT # Right flank : CGTGGCTTCTCGGCTTCACCAACAACTTAAAGCTCCAGCCAGATGATGTCGTCAGGCTTACGGGACTGTCTAATGACGGGCGGCTACCCGCACTCGGCCCCGTAGTTCGCGGATGTGAACGCCTCTATGGCCGCCTTTGACACGGCATAGGTGACGGGGGACGGCAGCTGGGCTCGGATGAGGGTATGGAGAGCATCCATCGCCAGGATGCTCGGCGTCCGTCGTGGTCCGGACGGTTCACGACCACCGTGAAGTGGGTCCGAGCCGACCCCGGGACAGTGCGCCGGTGGCAGTGGGTATTCGCTTCCGGAATCGACTGTCCGGCGGAACTAGAGGTGTGTGAGTCCCCTCCATGGGCAGCCCGACGAAGTGGCGCATGTTGGCCTCCAAGCACGCGGCCTGCGTGCTTGGAGGTGCAGCTCCGCCCACTCGCTGCCGTCGCCGTAGTCGATGGCTGTGTGTGGAATTCCGGCCGCGACGAGGTGGTCACGGGGGACGAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATAGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 772707-772251 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWS01000001.1 Saccharomonospora viridis strain ATCC 33517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 772706 29 96.6 32 ............................C AGATGTCTGTCGACCTCGCCCACATCAGGGCC 772645 29 100.0 32 ............................. GTGGTTGTCGAAGTCCTCAGAGAGAGTGGATG 772584 29 100.0 32 ............................. CGATCGAATGTCGGCTGATCCAGTAGCCGCCA 772523 29 93.1 32 ....................A.......G GACCCAAACGTGGATCGCCTCGTTGGAGCGCA 772462 29 100.0 32 ............................. CGATCGAATGTCGGCTGATCCAGTAGCCGCCA 772401 29 93.1 32 ....................A.......G GACCCAAACGTGGATCGCCTCGTTGGAGCGCA 772340 29 96.6 32 ............................G TGTCAACGGGTGAGCGCGGGCAAGCTGATGCG 772279 29 96.6 0 ..........................G.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 GTCGGCCCCGCGCACGCGGGGATGGTCCT # Left flank : CGATCCCATTGCAGTCCCGCATCCCATACGAGCCGCGCACAGTCTTCGTCCACGAACTGGAAGGCGGGTACCGCTTTTCCACAATCGTGGACACCGCAGAGCCAAGCGAAAAACGGCCTACCCTTACCCGGACCTCCCGCGATCTCGTCGACCGAGCGGCGCGTCACGGGGGCCAAGAACCGGTCCCACAGGCATTCGGCCACCGCAGCGGTATCCAACATGTGCGCCAACAACAGGTTCCGGCGCCCACCGCCCCGCGAGGCCGACTTCCCCCACAACGCTTCCAGCCATCGCTGTTCCGAAGGATCAGCCACAACCACGTACTGGCCCCCTGCGTTGTCAACCGACGGACATCGGGCACCGTAGAGGACACCGCCGACAATTTCCGGAACATGCGGAAATTGACTCCTCTCGGAGGAGGGATGAGCACTCCCCGCTCACTCTGTGTCAGACTGAATGAAAACCGCTCGTTGGCCGGGTAAACGCCCAGGTCAACAAGT # Right flank : ACCGGTACGGCGACATCCTCATCCCGCATTGGCACGCGCTGCCGTGGTCGTCCCCCGGCACCTGCTCGCGCCCACCGCCTACGACCAAACAGTGGTGCCATGGGACCATCACCACCGAGCTTGTGTGGTCTATTCGCCGATCACCCTTGCCGCCGAGATCGAGGCGGCAGGGCGGGCAGTGTCGTCGTCGACGAGACCCGACCTCATGACCCGCATGCTGGAAATTCTGCCCCGCTCGGTGATCGGTGTTCGAGGTCGGCATCGGCTACAACACGGCCCTGCTCACGCACATCCTCGGCGCGAGAGCATGTCTCCTCGGTCGACATCCGACTCGAGCCCGTCGGCGCCACGTGGCCACTGGTTGCGGGTGAGGACTGAAACAGTGCGAATGACAAACGACCCCCGGCGCGGGTGTGTCGGGGGTCGTTCGGTTGTGTCAGCGGTCGATCAGACGTCGAACTCGCCAGCTTTCACGCCAGCGACGAACGCGCGCCACTCGT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCT # Alternate repeat : GTCGGCCCCGCGCACGCGGGAATGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 782313-782644 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWS01000001.1 Saccharomonospora viridis strain ATCC 33517, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 782313 29 100.0 32 ............................. CTCTCGGGCGGGGCTTTTCTCTTTCGGGCGCG 782374 29 96.6 32 ............................T TTCCTTGCTCACGGTTTCCTCCAGGTCACTGG 782435 29 100.0 32 ............................. GAGGAGACGGCCGAGTTCCTCGACGCCCTGGT 782496 29 96.6 32 ............................G TTGCGCGAGCAGATCGACGCGGCATTCCCGAA 782557 29 96.6 32 .......T..................... CCTCTCCTTCACGCCGGGGGCCGACATGTCGA 782618 27 82.8 0 .....T..T........--.........T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTCGGCCCCGCGCACGCGGGGATGGTCCC # Left flank : AACTGGTCCGATGACTTCGATTTCCCGGTGATCGACCCCAGCATGGACCAAACCCACATCTCTGTGATCGGTCCCGAATTCGACACACCCACCACCGAGGCCGGGGAGTCATGACCGTCATCGTGCTCATCGCTGCCCCCGAAGGCCTCCGTGGCCACCTCACTCGGTGGATGGTCGAAGTCCACGCGGGCGTCTTCGTGGGCAACCCCAGCCGGCGAGTCCGGGACCGGCTCTGGGAGCTGTTGGCAACCCGAATAGCCGACGGCCAAGCCATCCTCGTGGAACCGGCCGATAACGAACAGGGTTGGGCCGTCCGCACCGCAGGAACCGACCGTTGGCGGCCCACCGACTTCGACGGACTCATCCTCTCAGCCCGGCCCCGCCGCCACTGACTTCCCGGAGGAAAGCGAGGTGCGAACCCCACCCTGTCGCATCATGCAGCCATGAACGTACTGAATGAAATTAACGGCTTGCCTCGTTAAAATCCCAGCTCAACAAGT # Right flank : TGCACCGGTTTCGTCCTCGCGAAGCTGCGTGCGCATGGACGTCACTGCTTGCGACGTCCTCGTATCGCCGTCGCGCTCACCTGTCAGCCGGTGCCTGCGACGCCGCTGAGCTTCAATCACCGCATGGTTCGCTTCTACCTCGACGAACTCGCTCATTAAAGGAAGGTCGGCATCCGGCGGGCAGATCAACAATGCTCCGCTGCCGTCACCCACACTCCGCTGTTCGTCCGCGGCGCTTATGGCGGTGTCGAAGACAGCCGTCGAGGTTGTCGGACTGATTCTCGCCCGTGGACCCCGGAACCGGGACATTGCCGGAACACGGTCGCTTCCGGACTGGCCGTCACGCCGTTGTTCCCGGCGGATAAAGGCGAGAAGCTGGTCGAGCAGCCAGCTTCGAGACCGTCACTTTCCTCGCGGGCCCCACCTGCGGGGTCAACAGTCAGGCGACCTTCGCCAACGACGGCATGGCAAGGGGCTGAGAAGCTGCGCACTGTCACCAG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 793175-792963 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWS01000001.1 Saccharomonospora viridis strain ATCC 33517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 793174 29 100.0 32 ............................. TTCCCATCCACAACGCGCTCAACTGTCTCAGG 793113 29 100.0 32 ............................. CGGTGCTGGCGGCATGCGACCAGCTCCGCTTC 793052 29 100.0 32 ............................. TGAATAGCGAGTACGCAGAGACGGAGGTTGCC 792991 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGCTCTCCACGCACGTGGAGGTGGTCCG # Left flank : GCTCTCGGGGAACAGAAGCTTTCGGATTCTGAGAAAAAGCGACTTCGGAATTGGTACGCCGAGCTGCAAAGGCTCAACGTCGTTCTGGAGTACGACCCGAACATCCCGCCGACACTCCACATGTCGACGGGCGGCTGGCGTTACGTACCGCGCGCGGACAGTGACGAGGGGCTTGTCATCCGGGTGAACGAACATGCACGGATGACTGACGAAGCCTACGAGTACCTACGCTTCCCGGAGAAATGGCCGGAGGCGTGAACAGCAGAACAGGAGTTCCGCCTTATGCGTGGAGGCATCACCCACGTCGTCAATAGCCCGACCCTGCTCGAAGCAGCAGTCTCCCCAACGACCGGGGGGCGGCTGCTGCGGATATACCGCAGCTTGATCGTCTCAGCGAACGGACGACTTTTCCGTCCTGTGAAAGATTTGCTCGACCAAAGTTGTCTGTCCGAGGGGATCACTCGAAAGTGTGATGACGAGGACATGGCCGGAGGGGCGGC # Right flank : GTGTGGCAAGTCTGGGCGGCGTGGCGGGTCCAGTTCGATGCACAGCTTGAGCGTTCAGCCCTTATCGTTGCGGCCATCGGTCAGCGGACGCCGTCGTGTGCGATGGGTTCCTCAGGCAATCCTGCCCACGTCGCCCCTGCGACAGACGGTGGTCGAGGAACCTGCCCATGCACCCGCCTGGCTTTGCATGCCCACGTGGCCTCCCGGGCTCATGAGAGCAACGCGGTAATCGTCCCAGGCCTGGGGAAGGTGCGTGAACGTTCGCCTGGGCGTTGAGAACATCCGACAGCACCTCACGGCGACGTCGCGCTCCCGACTACCACGACACTCCCCGGCAGGGCGCGAGCGGTCAGCACCGATCGTGTCGGTCCCACGCCGTACGCTAACGCCGCGATGGCTACACGAGGCATAGAAGGCGCGTACCAGGGTGCCCTGCGAGCGTTCCAGAACCCCATGCTCGCCCTCCTCCATCAAACACACGCGCCGTTCGTGGTGACGGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 794852-794030 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWS01000001.1 Saccharomonospora viridis strain ATCC 33517, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 794851 29 100.0 32 ............................. TTGGCGCCTGGTGATCGTGGTGATGGGGGGTG 794790 29 100.0 32 ............................. TTGTGACCCGATGATACCGGGACAGGCCGACG 794729 29 100.0 32 ............................. TTGTGACCCGATGATACCGGGACAGGCCGACG 794668 29 100.0 32 ............................. GCGTTCCGGCGCATCGACCGGCACGGCCGCGT 794607 29 100.0 32 ............................. AGGCCGGCGGTTTCGTCGACGCGGTCGGCGGC 794546 29 100.0 32 ............................. CTGCGTCCTCGCTGGAGTCCTACGCCGCCACC 794485 29 100.0 32 ............................. CCTCCGGGGCTGTACACAGCTCCACGGAGCTC 794424 29 100.0 32 ............................. GGGTGAGGGGCCGAAGATGGCAGCGAAACCGC 794363 29 100.0 32 ............................. CGATTCGTTTTCGCCGTCCGCGTCGACGCCGA 794302 29 100.0 32 ............................. GCCGCGCTGGCGTGGATTGTGGAGGGTGCCAT 794241 29 100.0 32 ............................. TCCACACACGAACCCGAGCCGGAGACAACCCG 794180 29 100.0 32 ............................. CCCTTGTAGTTCCGGACCGCCGCGTTCTGCGC 794119 29 100.0 32 ............................. TCGACGAGTACGGGATCACCGAGCGAACCAGC 794058 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 100.0 32 GTGCTCTCCACGCACGTGGAGGTGGTCCG # Left flank : GACGTCCAGCGACTCCTCGACCCTTCCATCGCCCAGGATCACGACGAGACGGGAGAGCCGGAGGAAGTCGAGCTCGTGCATTTGTGGGACCCTGATCTCGGTGCGGTCGAAGCCGGGGTCAACCATGGCTGGGACTGGGAGGATTGAGCCTGATGCCCAATCTTGTCGTGATCTCCACGACCGCTGTGCCGGATTATGTGCGCGGTTCATTGAGCCGCTGGTTGACCGAGCCGGCTCCAGGCCTCTACGTCGGGTCGATATCCGCTCGGGTGCGTGACTCTCTGTGGGAGCAGGTCAGCGCGGCCGTCGGAGAGGGGGCCGCGGTGTGCGTTCACCCCACCGACAACGAGCAACGCTACGTCATCAAGACCGCAGGCGAACGACGCCGCCGAGTCATGGACTTCGACGGCCTGCAACTCATCGCCTTCCGTGACCTGAACCCGCTGGGGCAAGGGAACCAAAACGAACAACCGCCCTTCTAAAACCGCAGGTCGCGAAGG # Right flank : CAGCCTGTAACCCCCCAATGTCTCAGTGTCTGGGGGCCGGGCCATAGGATGCGCCCTTTATGTGCGATCCCTCGGTACCGGTAAAGTCACGCTGAGGACAAACGAGGGAGTCAAGATGCGAACCGGCCTGTCCAGGGAAGAGATTATCCGGCTGTTAGAGCGAGGTTTCACTCGCTCGGAGATCGCCGCAACTTACGGCGTCACCCCGCAGGCTGTCAACTGGCACCTAAATGAGAAGGGACCGAAATACAAGGACCCTCGGCAGCGCGCAATGGAGCACCTGCCGTGGAAGGTCGAAAGCCGTCACAAGAATGGCGCGCCCTTTCAGAAGCTCCGCATGCACATTAAGTACGTCGCTCTCGGGGAACAGAAGCTTTCGGATTCTGAGAAAAAGCGACTTCGGAATTGGTACGCCGAGCTGCAAAGGCTCAACGTCGTTCTGGAGTACGACCCGAACATCCCGCCGACACTCCACATGTCGACGGGCGGCTGGCGTTACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 10 804232-805483 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWS01000001.1 Saccharomonospora viridis strain ATCC 33517, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 804232 29 100.0 32 ............................. TCGATTGGCGATCTCGTCGCGTTCTGTGATCA 804293 29 100.0 32 ............................. ATTGACGAGGCGAACAACAGGGCAAGCGTGAC 804354 29 96.6 33 ............................A GTGACCCCGGCCCCGCGGGGTTCTGGCACCCTC 804416 29 100.0 32 ............................. TTGTTTTCGGAGCTGATCGGTACACGCACCGA 804477 29 100.0 32 ............................. CTGGCCGAGAATCTGGATCGGCACGAGCACGA 804538 29 100.0 32 ............................. CTTTCTGAGAGTGCCGTACGTGTAAAGGGGCT 804599 29 100.0 32 ............................. GCTCCAGACTGGCGCCCCGGAGCGGTGCGCGT 804660 29 100.0 32 ............................. GCCGGCGGCCCGGCACCCCCGAGGGGCCCCAC 804721 29 100.0 32 ............................. CCTGAGCTCGGGCGGGCCTACGACGCGCAGCG 804782 29 100.0 32 ............................. CGACCGGTCGGTGATGGCCTCCCGCAGCTCGG 804843 29 100.0 32 ............................. TTGGTACGCGAGGGTGCCCACATTCGGGCCTC 804904 29 100.0 32 ............................. CACCATCAGCGCAGCCCTGCACCAGGCGACCT 804965 29 100.0 33 ............................. ACAGCGAGGACAGCGGCCCGACGGATGTTGTGC 805027 29 100.0 32 ............................. AGGAGGCGGCCGCCATCGCGCGGCGGATCGAT 805088 29 100.0 32 ............................. GACGCCGCCGACGCCGCGATACCGGTGGCCGC 805149 29 100.0 32 ............................. ATGTCTTTCGTCGGTTCCTGGATCAGCCCGAC 805210 29 100.0 32 ............................. TCGTCTGGTACACGGTGGAGAGGGTGGACGGC 805271 29 100.0 32 ............................. AGAGTCTCGATCTCGTACAAAGTCCCCTCCAA 805332 29 100.0 32 ............................. GTGGGAATGTCTACCAACCCCCGGCGGCGGGT 805393 29 100.0 32 ............................. TCAACATGAGTCATGCTGTCGCTCCGCCATCC 805454 29 93.1 0 ........................T...C | A [805478] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.5 32 GTGCTCTCCACGCACGTGGAGGTGGTCCG # Left flank : TCGGAAGCCATATGTGGGAAGCCTCCTCATGCCTGCACCGCCGTCCTGTCGAATCCGGCAGATATCCTTCCGGGACACCGACCTGCTCCTGGAATCCCGGGGTCAGTTTGCCGACGTCATGCGCAGCGGCCCAGAACTCCAGGACACGGCACGTCTGCTCCTCGGTCAAGCCCACGGCTTCGGCCAACCCCGCCCGAACACGCGCGGACAGGTATCGCTTCCACAACCAGCGCACCGCAGCAGCCGCATCGAGGCCATGGCATACCAGCGGGTACCGAGCCCCCTCCAGCCCCCGTTCTTTCCCCCAGAAACGGAGATCGACCAGCAACACATCCCCCAGAGCAAGCTCTACACTCAAACCTGCACGAACACAGTCCCGCTGCGTTCGTGCCGACACGGTAGCGATCCACACCGACAAAATTGAGCAGATGCACCCCACCCCTTCGACGACACGCGACAAAAACGTGCAAACGACGAACTAAAGTCGCAGGTCACGAAGG # Right flank : CCCGTGATGTAGCGGTCAGGGGATCCCACTTCACAACAGATGGTCAAGAACTTCAGCGTCACGGTCACCTTCTCCACAGGCTGACGTAGTTATCCCTCAAACCAGCAGGAATCAGGGCGGGCGCGGCAACTGCGATCAGAGTGACAACACCCGGTCCGGCTGATGTCGGCCGCGAAGCCTCGGCATCCGGCGACAACGATGGGTGATACAAATTCCATCAACTCTGCTTGGCCGGCGTGTTCGTACGGGGATCAGTTGCGTTTCCGATCGATGCGTCGTCATGCTCAAGCTTCAACCGCATCCATTACTCCGCGGAACAGACGGTGAGCGCGAAGCGGATCGAGTTCCGTGGCGTGATTGTTCGTATAGATCCGTGAGGGCATTTCGACACTTTTGACCGAACCGAGCCCCACCGCCCTGTTCAGGACTCGCCGTGGTGTTGGAGTGCCGGAGGTAACTCGCGGGACTACTCGCCCAGCACCATTGAGGTGGGCGAGACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //