Array 1 18374-17692 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWQ02000060.1 Leptospira kirschneri str. H2 ctg7180000018188, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 18373 37 100.0 36 ..................................... TTTAAATTTTATTCTTGAAGCAATGAAGAATTATAA 18300 37 100.0 33 ..................................... AATTGGAAGGACATCAGATAAATCTATCCCAGT 18230 37 100.0 36 ..................................... TATCCCATCTAATTTTTTAGCTTGTACTAGTTGAAT 18157 37 100.0 34 ..................................... TCATAAGAATCAATTTGTTTAGATTTTTCTAATG 18086 37 100.0 35 ..................................... GATTCCTAAATCCGTTTAACACAATACTCAATATA 18014 37 97.3 34 ...................T................. TTTGATTTTTATCAATGCCTTCATACAAACACCT 17943 37 100.0 35 ..................................... ATTAGATCAATTTAATATGGCTATTAAGTTTACAT 17871 37 100.0 36 ..................................... GGTTTCATCGCGGCCCTACGCTCGCCTTCGTCGTAA 17798 37 97.3 33 ...................T................. TACAATGTTCGCAAATCATTTCAGTTGATTTAA 17728 37 78.4 0 ..........................AAAGAAC..G. | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 97.3 35 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : ACACAAAAAGGATCGATGCGATAGGAACTTTAGCAAAACACTCTTTCAAACTAAAACGTCTCACTGTTCGACAGATTCACATACTACATTGGATTATACAGAATTCTCCTAACCGACGCTTTATAACAACATTTACCGAGGTTCAATTTTATGGGATGAGTAAAACATATAATATAGCAACAAACATAATTCAAAATACGAAACACAGCGGTTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCCTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTCTGCGAACCTGTTTCTCCCGATCAATCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCGACCTATCAAGCCGCT # Right flank : CAAAGCCAATCCAGATTGTATTCAATTCCGACAGAACCCAATTTATTTCAGTTTGAATTCTCTATGACAAAATAGCGCCCCTTCTGAACTTGAAAAGAGCGAGTTCGGCCGAGAAAAAATTCTCTAAAAGTATGATATCAGAATTTGTTCGTAAAACCGCGATTCGTGGTAGTTCCCACATTTTAGGAATCGATATGTAAAGTTCAGATTTCAACTTTTTTCAGAAAAATGAATCATGTTCAAACTCACGTTAGTATAAAATCAATTTTAAGGTAGATCCCCACTTTGTAACATGAACAAAAAAGTGTACTCAGACACATGAAAATAATACGATTCTAATATTTATCTCAAAACTTAAAATGTGGGAACTAACACAAATTATAAGAGCTTTTACACTTTCACAAATAATACACTGCTCATTTTTGATGCCATTTTCATAATAATTTAACATGGGTTTGGCGTAAAAGATTCATTTTATAAAAACCTAATCTTTCTATAAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : GTTCTTTCTCTTCTTTAAATGGAGAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 147027-147274 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWQ02000059.1 Leptospira kirschneri str. H2 ctg7180000018214, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 147027 36 100.0 35 .................................... CGTTGATTGACTTGAGTGTGTCGTAGTTTTGCGCT 147098 36 100.0 34 .................................... CGGGGAACCGAACTAGGACACCGCCGAATCTCTC 147168 36 100.0 34 .................................... CCTCACGTTTACGGATTTAGAATCAGATTGGGAA 147238 35 80.6 0 ..........A..G...G..G....C....A.-... | TT [147265] ========== ====== ====== ====== ==================================== =================================== ================== 4 36 95.2 35 GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAA # Left flank : TTATAGAGAATTTTACTAGGTTGTTTCAAAACTAAAAACTTCGCGAATGTTTACCGACGAGTTAGTCTATTTTGCTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGGCCTAAAAAACATTTTTTTAAAATTTTGATTTGAGATAATTTCTAAAGAATTCTTCCGTTTCTTTTCCGAAAATTTCAGTTAGGTGAACATTGACTCATTTATAGTTTTAAATCTATTTTTCCTGGAATCCTATTATAAGTTTTTGCCTTTGATTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATCAATTGTGGATCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATGGAATAGATTAGCTTAACAATTGTACAGTATGGTAAAAATAGGTTCGCGATTATTATGTCTAGAAAGCTTAATAAAGTATTTTATAATACATTATTTTCAGTCCTATCAAGCCGCT # Right flank : AGTGTCTAAAATTTTGTTCCTGAAACGGAGATACTTTTCAAAAGTTATGATACTCTAATATATGAGAAATGACTAATCGATAGGAATTGATTGCTCGGAACAATAATTTCTAAGTTTTGTGAGAGCTCCCACAATTTTAAAAAATTGGAATGTTTTGTATATCAAACACTACAGGTTTTTATTTAACATAAATTCGAAATAATAGAAATTAGGAAAAATCTATTCTAAAAATAGGAGTTCCTTTTTATTTTTACGGACCAAAGTTTCTCTTTCGGAGAATATCTGGTTTGGTAAATTCTACCATGAAAATTGAGTATTCGTGGTGGTAGTTCCCACAAATTAAGTCTTTTTGTGAATGTATAGGTTTTAAATGCATTTTAACGTGAGTTCGACGTCATAAAATCGGGGCGAATCCCGCTGCGCTTTCCGCTATAGTTAGTCGTCCCTGAAAAAGAGTTAAAATGTCGAATAACGCAAATAAAATGCTATCCAAGGAGAAA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.80,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 28809-30066 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWQ02000053.1 Leptospira kirschneri str. H2 ctg7180000018192, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 28809 37 100.0 32 ..................................... ATAACGACTATAAGTATTCTAGCTGGGTTCTA 28878 37 100.0 35 ..................................... TTTACCATCTGGATAGTGAACGTTGGGTCTCTCGA 28950 37 100.0 35 ..................................... AATAGAGCTGACGCTCCAATTCCGCCCGAGGTATT 29022 37 100.0 36 ..................................... AAAGTCAATAAGAAGGACTTTTTTTTCTAGAAGGAC 29095 37 100.0 35 ..................................... ATGGCGAACAACCCCTTACGGGAGTTTGTCCCGAA 29167 37 100.0 34 ..................................... TTTCGAACAACACCATTCGAATCACGAAAATCGT 29238 37 100.0 35 ..................................... TGATCGAAAGCTTCGGTGACGAAGAAGAAATCTCC 29310 37 100.0 34 ..................................... ATTTTATTCAGTTAATGGATAGGTATTAAATGGA 29381 37 100.0 33 ..................................... TCGGTCCGCATTGTCAAAAAACACAGTTGTAAA 29451 37 100.0 37 ..................................... TCGATCTAAGAATTTGTCCTCGGACGATGTCATTTAG 29525 37 100.0 35 ..................................... CGGAAATCTCAATAACCAAGAAACGACAGTGCTGT 29597 37 100.0 35 ..................................... AGAGTGAAAAGGTAAGTATTTAAATGCTGGCATAT 29669 37 100.0 34 ..................................... CCGTCTCCATTTAGATCCACAACCTGATAAAACG 29740 37 100.0 34 ..................................... CAAACGTATTAAAGATCTTAGTCTGCATCTCATT 29811 37 100.0 34 ..................................... AAAGGAAGAATAGAAGGATTTGTATCTGTGTCGT 29882 37 100.0 34 ..................................... AGATACAAGGTCGACTCCGTATGCGGTTGAAATA 29953 37 100.0 34 ..................................... CCGCAATCGTTCCGCGGACAACGTCGTAAGACAT 30024 37 94.6 0 ..........................A........G. | AA,ACAA [30050,30055] ========== ====== ====== ====== ===================================== ===================================== ================== 18 37 99.7 35 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : TGATTCCGAAGATGCGCGTAAAAAAAATAGAAGGGTCAATTTTATCATTCTGAAGAAAAGTAAGTAAAACTTTTCTATATTTTAGATATTTAATAGAGTTGTTGAAAAATTCCATAGTGAAGATTCGTAAAATTGCTTCAATTGTCCATTCCAATCAGATCAAGAATTAATTTTCCAACAACTCTATAATTCAAAATACGAAACACAGTGTTTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCTTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTCTGCGAACCTGTTTCTCCCGATCAATCGCGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCTACCTATCAAGCCGCT # Right flank : CCAATCTAGAATAAAGTTGTTGAAAAATGAATTCTTGATCTGTTTCTATTTCATGGAAATGAGCAATTGAAATAGTTTTGTTAAACGCCACTATGGAATTTTTTTCAACAACTATAATTCTGAAAAAAGTTGGGATCTGGACTTTGTAGATCGATTCTTTAAATGTGGAACTACTGCAAAATTTCGTTCGGAAAAGTATGATTTAAAATCGCAAAAAAGATAAAAAGAGACGTAATCCGTAGGAACTACCACAATTTAAAAAATAGAAGTTTATAACTTGTCGTATTCAAGTGTGGAACTACTGGTAAATCCACTATTTGTGAGAGTTCCCACATTTTTGAGACCAGAAATAGGAAAGGTTTAGTTTCTATCCTCTGGACGCGAAATCGATACGAGGGAACTTTAGCAGAACGTTCTCTCAAATAAAAGACGAGATATTGTATTAGGTTTCTTTTATGAAATTTATTGACTGGAGCCAAAAGCGCGGTCCTGCAAAGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 32903-33082 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWQ02000039.1 Leptospira kirschneri str. H2 ctg7180000018231, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================= ================== 32903 38 100.0 33 ...................................... AATTTGATTTTGAGTGAGTGATTCAAGCAGGTC 32974 38 100.0 33 ...................................... CTGTTGGAGCTATTCTGTCTACAGGATTTGTTT 33045 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ================================= ================== 3 38 100.0 34 TGTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : TGAGTTCGGCTGAGTAAATATTTTTATAAAAGTATGAGTTCCTACAATTTTAGAAATTGTTTGTAATATCTTGATTTGTGAGAGTTCCCACATCACTTTACTGACAAACCTAAATTTTGTAATAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCAAACTCACGTTATATTACAATGATTCAAAACCAAATATTACGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACACGGGACTTTCGCACCCAAACGTATACACGTCGTTTGGCGATTGAATGGTTTTGCTTAACGTTTATTCAGTATGGCACATACAGATTCGCAATTATTATGTCTAGAAAATGTTATTAACCTTTTTCTTATACATTTTTGCGGGGCTTTTGAGCCGC # Right flank : CAGGTCAAGCGAATCACCAAACTTCTTTTTGATTTGTTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTTCTTTAACGTGAATTCGATGTAATCAATGTAAAAACAATTGAGGCGAGAACTCAGTGTTTCATAGACAGGCCTTTGTTTAGATCACGCTCTAAACTCAAACCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTTAACATTCTAAATTTCAAATGAAAGTATGAAATTTTCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTTGTATGAGCGCTACATTCCATTTTTTTAAAAAACGAACCTTTATAAAATTACAAATTTTAGCTACGCACATTCCACATAACGACCGTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATTTTTTTTCCTCCGTTGGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.70,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 10171-9251 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWQ02000032.1 Leptospira kirschneri str. H2 ctg7180000018206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 10170 37 100.0 35 ..................................... TCACTCTTAGACATTGTTCCTATTTTCATAATATT 10098 37 100.0 35 ..................................... AGTTCGAATGTAATATCACGACAACCCTGTCTGTC 10026 37 100.0 34 ..................................... TCAAATTCGTGTCCGCTTCGGATGCCGGAGAAGA 9955 37 100.0 33 ..................................... CGCTTCTTGCATGATTTTACCTCTTTTGATGAT 9885 37 100.0 34 ..................................... TTTAATTCCAGAGTTTTGCCACATTCTAATAAAC 9814 37 100.0 36 ..................................... AAATTTTACATTATCAAAAATACACTCTTTTAAATT 9741 37 100.0 34 ..................................... TCCTTTGTTAACAACTAAACCTTCTTTTCTAAAT 9670 37 100.0 34 ..................................... ATTTTGTCTTTTTGATTCAACAGGAAGATGAGGT 9599 37 97.3 34 ............................A........ GAACAAAAAGGTCCCGAAGATGAGTCTGGATATG 9528 37 100.0 34 ..................................... ATTTTTTGGATTGTGATAAAGAAATTCGGAACTT 9457 37 97.3 134 ..........................C.......... TATGTGGGCGGTCTTACGACCATATTTGCCTACTCCATTAGAATGGAAACGACAAGCTTTGTGACATATTTAACTAATTTTAATTTTTTCTTTTTAGCAAATTGAATCTTCTTTGCGATCGTTTTTGATGCGAC 9286 36 70.3 0 C......T..C.A.CG....-.A....AAG....... | ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 12 37 97.1 43 GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : ATTCTACTTCGATAAGCATATATTCTGAAATACAATCCATTTAGAACTTCTATATTTTTAGAATATTCCATTATTTACTTATAAGCCCTACAAATTTTTAGAAACAGATTCAGTTTAGACAAAATTCTGTACGCTCTGATTCTATGGTTTCTGAGTGAGTTAAGTTTTCAAGTCCAGCGCTTGGACAATCGTCTCAACAAGAATGAAAGAACCCTTGAATTAAATTTCAAAATCGATCTTTTTAGTCACAAACTGAACAATCCGGAATTCAATATTCTTGACTTTAAAACCTGGGTCATTTTATGATGAGTCGCTTTTTGCGAACCTGTTTCTCCCGATCTTTTGCAGCCCTTTCGCGTTTCAATAGACGGTCGCCATTTGTCGATTGAATGGGTTTTGCTCAGCAATTACAGTATGTTACGATTAGGTTCGCAATTATTATGTCTAGAAAAGGTAATAAAGTTTTTTCTAATTCATAAATTGAGACTTTTCTAACCGCT # Right flank : TACCACGGTCTTACGACCATATTTCTTACTTTGTTCGCAATGGATGGAAATCGGCATTTTAATGCCGATTGACTTACAAGTAATAATTTAACGTGAATTCGTCGTAAGAGATTGTTTGATAAAAACCTGATTTTTCCATAAAAAATCAATGTTTAAAAATTTGTAATGCGACTTGAGACGCAGAAATTCCCAAAAATCAAGTCGGCCTGGATTATTTAACTTTTTGCGGTAAATCCTACATTCTCAGTTTTTTACAAACTAGAATTTGACGTTACGCGAAATGGATCAACGCGGGGAACTTTAGCAGAACGCTCTTTCAAACTAAAGCGTCTCACTTACTGAATGCCGATCTTTAGAGAATCATTCGCTGAGTTTTCTGGATCGTTAGACGGTATCGTGTTCTATAATCAGGTGAATTAGCGCGAAAGGGATCGATGCGGGGTTAATAAATTGCGACTTAAGACGATATGTTGCATTACATTTCCTGCATGCAATTTATT # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:-0.85, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 62808-64776 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWQ02000032.1 Leptospira kirschneri str. H2 ctg7180000018206, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 62808 37 100.0 34 ..................................... AAACGATTGCGTTAAACTAGAGGCCATCTTTGTC 62879 37 100.0 36 ..................................... GAATCGAGACGTTTTGTGATGAGTTTGGTAAGAAGT 62952 37 100.0 33 ..................................... TTTCCACGGGCCAAACTATGCACGATTTGATCT 63022 37 100.0 36 ..................................... TTTATAATATCTCTTGAACTTATTTTATACATGAAA 63095 37 100.0 36 ..................................... AAAATATTATAAATACAAAAGTTTATATCGGAAAAT 63168 37 100.0 34 ..................................... TTGTAAAAGGAAAAGTAACTCCGACAGCAGTATA 63239 37 100.0 36 ..................................... ATTTTTTTTGTCCTCTTGGCTTTTGGGTGCCACCCG 63312 37 100.0 33 ..................................... CCTTATTCTGAGGTTTCTTTGGATTTTATCCAG 63382 37 100.0 34 ..................................... TTTTTTCAAATTTTCGTAAAGATCCTGAAGCATC 63453 37 100.0 36 ..................................... CAATAACTGGACTTCAACGGTCACAAAATAAGAATT 63526 37 100.0 35 ..................................... CTTTTGACGGTCGCGTCAGAGTAATCCGGTCCACT 63598 37 100.0 35 ..................................... TTTGCGTTCTTGATTCCAGCGTTTGAATAGATTAC 63670 37 100.0 35 ..................................... CGTGGGCTGAAATGGGGAGCAGGGGACCCGCTTGG 63742 37 100.0 35 ..................................... TTTGCGTTCTTGATTCCAGCGTTTGAATAGATTAC 63814 37 100.0 34 ..................................... TCTGGAATCAATTGATATGCGTAAACTCCCAATA 63885 37 100.0 35 ..................................... GCATGAATCAATATATACGACTTAAATCGACTAAT 63957 37 100.0 33 ..................................... AGCGTCTTGCATGTTTTTGCCCCTTTTGATGAT 64027 37 97.3 34 ................A.................... ATTCTGAAAATGTTAGCTTACTGAAAGAGAAATC 64098 37 97.3 34 ................A.................... TTGTTTGACTCTTGACTCAGATTTGCAAAATTAT 64169 37 100.0 34 ..................................... CCTTCGTTACACCTTTAAACGACTTACTCAAGTT 64240 37 97.3 33 ................A.................... GAGAACGTTACGGAGTGCTTCAATGTGATCTAC 64310 37 97.3 35 ................A.................... TCGTTCCACACCGCTTACTCACAAGGATTTTTCTC 64382 37 100.0 34 ..................................... TTTCAGGGCTGGAATTGAGCTAACTAATGGGTTC 64453 37 100.0 35 ..................................... CTTGTACACGCCACCGTGACCCTCGTAAAGGTCAA 64525 37 97.3 36 ................A.................... GATTAGATTACGGAAGTGAGGAGAATAGGACATGAA 64598 37 97.3 33 ................A.................... TCCTTGATGATTTGTTCGTTCTGCCATGCTTCA 64668 37 97.3 35 ................A.................... TAATATACTATGAGACATAAAGAGGAGAATGCACT 64740 36 83.8 0 ................A..........T.-.CA...A | G [64765] ========== ====== ====== ====== ===================================== ==================================== ================== 28 37 98.7 35 ATTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Left flank : GAATTCCATTGGCCATAACATTGAGTGGAGCCAATGTTCATGACAAGCATAACGTAAAAGAGACTTTAAATTCAATCCTGATTTTTTCCGGTAGAAGAAAAAAGAAACCAAAACATCTCTGTCTTGATAAAGGATATGACTTTAAAGATACGGAAAAATTAATTAGAAGAAGAAATATCCGGCCTCACATTCGAAGAAGAGGCGAGAAACCATTGATCGGTAAATATAAAGGAAAGCCTCGAAGATGGGTCGTTGAAAGAACGAACAGTTGGCACAATCGATTCAGGGCTATCCTTATCCGGTGGGAAAGAAAATCTGAAAATTATCTTGCATCTCTTTATCTCGCAAGCACTATTATTGTTTTCAATTTCTTTAATAGATAGTTTTGAGACCGGCTCTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAGAGCTTTTTCTAATCCATAAACTTGCACCTTTTCGGCCGCT # Right flank : AAACGATTTATTTAAAAAAAAAATTTATTTTAGGTTTTAAGGCGACCTCTTTATAAAAGTTTTCTCTTAAAGAGAAATCCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTTAATAAACCATTGTTAAACTTTACAACAAAGTACGACTATGAGAGGTAGTTTGTGGGAACTCATACAATCTGATTACTGTGATGTAGGTTTATTCCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTAAGTACCGTTAATTTTATCGCAAAACACTGATTCCATGCAAAATATTAGGTACTTTATTGATAGTTATGAGTGATAATTATATAATAGAGTTGTTGAAAAATTAATTCTCCATCTGTTTTCTATTTCATAGAAAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTGAAGAGGAAGTGGATTGAAAC # Alternate repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 39944-40631 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKWQ02000023.1 Leptospira kirschneri str. H2 ctg7180000018243, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 39944 36 100.0 35 .................................... TTTAAAATATTTAAATGCATAGCTAAAAACTAAAC 40015 36 100.0 37 .................................... AAAGAAAGCAAGAAAGAAAGAAAGAAAGGGAGTTAAG 40088 36 100.0 37 .................................... CTGCGAATGCCACACCGATACCAATCAATAACGTAGT 40161 36 100.0 35 .................................... ATAAACTTGTTTATGCTGGGTTTGCATTAGGTGGC 40232 36 100.0 37 .................................... GAGAATAAATCATGAATTTAGGAACATGGAGACACTC 40305 36 100.0 35 .................................... TTTTTTTCTTTTTTATTGTATAATAATTATTTTTA 40376 36 100.0 37 .................................... CGCGTCTACAACGCGATACTGTCTTACCAGGGCGGCT 40449 36 100.0 36 .................................... TAATTGATATTACCCCCGGAATGGCCCGAGATTAAC 40521 36 100.0 37 .................................... ATTCGATGGTAATTTAAAAAATCAGTAAAACTCATAT 40594 36 91.7 0 ..............................A.C..A | CA [40623] ========== ====== ====== ====== ==================================== ===================================== ================== 10 36 99.2 36 CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : AATTGGCTAAAGTTATCGAAAAAGAAGACGACGTATTTTACCTGACTCTTTGCGCTAAATGCGCCTCCGGAGCTCACACCCAAGAGAAAAAATCGGCCTGGCCAGACGCACCAAATACTCTCAAAATTCTATAATTCAAGTATCTCTTTATGGCATAGACATAATTCCCTTTTTTTAGCATCAAAATTAGCGTCTTAGTCCAAACATAACTTCGTATTCGTCCATCTTTATAGAGATTCAGAAATAACCGCATTCTAATAGGAGTTAGTTGAAGTTATTTTCTTTCTTGCGAAAATTCTGGTCCAATTTATTATCAAATACGGATCAGAACATACTTGAATTGCTATTTCCAAATCCTAAAGGCGGATTGACTCAAAATATAATTTATTAAAGAAATTCGAAATGAAAAAAAGTTATAAAAAGCAATATTCTTGTTCACCCTCTATATTTTCCTTTGTATCGACAATCTCTACACCTAAAAGCTATAAGATTAAAATGCT # Right flank : ACCCACAAGTTGAATAGGATTTTAGAATCAAAATTGAACTAAAGCAAAACGCTTTCCTGAATGCCGATCCTTAGAGAGGCATTCGCTGAGTTTTACAGAGGTTTTGTCGTAATTCCCACAGATTTAATATTGAGATCCAAATACTTGTGGGGTTGGTTATGATAGGAAGCGAGATAGCCTTAGATAGCGGAGCATATCGAACGACTCATAGGGAGTGAGATTGAGTTAAACCGAAGGCACTTTTGCGTAGTAAAACCGAGCGCCAATAGTAGTGAGACGTTGATTTACCAACTTGACTTTTTGGTAAAGTAGAATGGGTTTCGAGACTTTCTGTAAATATTACGACAATGTGCCGGTTAACTTGTTTTCGGTATCATCCGATGCGAAAGCGATTGAGGCGGGATCAACAAATTGAATTCATGAAAAGATTTTGTTTTCAAACAAACCCCCCAATTTGTTGATCGGAGCTGAAAGCGCGGTCCGGCAGCGCCGGATTCGCC # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACTTAACTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //