Array 1 33865-34819 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUR010000012.1 Listeria booriae strain FSL L7-1250 NODE_12_length_86741_cov_61.560579, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 33865 30 100.0 36 .............................. CCTGATCATTGATAATCCAATCAAGAAATGTTATAA 33931 30 100.0 37 .............................. AAAAACATCGAGACATGTGTTCGTTAATGAGGAATAG 33998 30 100.0 37 .............................. ATCAAACCGCACTTACAGGAAGGTATGAAGTGGTTTG 34065 30 100.0 36 .............................. AAACAATGCTCACCATAATCCATACTACATACTTCA 34131 30 100.0 36 .............................. TTGGAAACGGATTTGCTAAAGGTAACAATGGTGGGG 34197 30 100.0 36 .............................. CGCTTTTGCTTTAGGCGCCACGCGCTTGCGGTATTC 34263 30 100.0 36 .............................. TGTGTTTTATTTGTAAGTCCAAGTAGTTCCAGATAC 34329 30 100.0 37 .............................. GCAGTCGTAACGCAAACGGACAACACAACCGAAGTCA 34396 30 100.0 36 .............................. AAATCTGTTAAACGTATAAAATTGTGGTCGTTCTGA 34462 30 100.0 35 .............................. ATTGCCGATCTAAATTCTGATCGGTGGAACTTACA 34527 30 100.0 35 .............................. TATTGGTTAGATGGCTATCGATTAGATAGAATATC 34592 30 100.0 36 .............................. TGAACTTTAGGAGAAACGTACTTAAAAGGTTTCATC 34658 30 93.3 36 ............GT................ CGGGCATACTTAGCCAAGAAAACTGAAAAGTATATG 34724 30 90.0 36 ............G...C...A......... TGATAGCCCGCTGGATTTTTTGTTTCTTTCACGCTA 34790 30 70.0 0 ........A......A.TC.A...C..GTA | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 96.9 36 GTTTTTATCTAAACATTGTGTAATGTAAAT # Left flank : GATGCTGAGCGCAATATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCCGGCACAACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAGGGGTTAGGATGGTTTTCGAGAAGTAGAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTAAGAGGGTACCT # Right flank : AGCGTATCGGCAATTTCACACAACCCATCTACAAAAATAAAAAAATCTGTCATCCTATCAAAATAAAAAGAGGGACATCGACAGATTTTTTTATGCAATAATACATTACCCGTATCTCTCCAAACAACCGTCTAAAAAAGGTATTACAACAATGGAGCTAAAAATATAGTCGCCAGCCCGTCCACAATATCATCTTCTGTATAGCCACTGACTGTCAGTTGACGAATTAAAAGTGGATTCAGCACAGCTGCAATGGTCGTGCTCCAAAAAAATGTATCCACATCTGTATCCACTTGCTCAAAAATGGGCTGGATGAGTTCTTGTACAATGACAATAGGTGGTGGGGGGCTATTAGGCACTTGATTATTGTTAACCAGATTTCCATCTATATGAGTAAGCATCACCTCTAACCAACTACTATGAGAAGAGATAAGAGAAACCAAGGCTCGAATTATAAAAACGCCTTTATCGTAACTTGTAGCTTCTTTATTATCATTCAT # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAACATTGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 38603-38372 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUR010000012.1 Listeria booriae strain FSL L7-1250 NODE_12_length_86741_cov_61.560579, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 38602 30 100.0 37 .............................. GCATCCGGGAAATGACAAAAGAGCTCGAAAACTCGGA 38535 30 100.0 38 .............................. TCAAAAATATGTAGAGTATCTAGAATCACAGGGATATG 38467 30 100.0 36 .............................. GCTTAAACAGCTTTCAATATATTTAAATTGATCTTT 38401 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 100.0 37 ATTTACATTTCACATTACTTAGATAAAAAC # Left flank : AGCTCAACTCCCCTATTATTAAGAGCAAGTTCAAATAGCTCAATGAAACTAGTAACAAGCAGAAAGGTTACAGCTACGATGACAAAAGTTAGCAAGGCAAGTGCAGCTGTTGATCGGACTAGGATTAGTTCCAGGTCTTGGTTGGATAGCCGCGGCATTTTCTGTGTATGGTATTATAAGCGAATTTAAAAATAAGACCGCTTACATTACAATCAAACAATACGCCAACAATCACCAGTATAGGAATGATTTGTATGTTTATAAAGATAGCAAACGAACAAAATTATTAAATAAACAAACTGGAATTCCACAAAGACATTTTTCTTAAATGAATACATTAAATTTATGAGGCTGGTACTTTAAGTATCGGCTTTTATTTTTAATACTTAAGCTAGCCTCATATATTCAGGAAATGTGTAGATAATCGCCTATGGGCTATGTTCGCATATTTCTTAGGTAAAAACGATTAGGCGTCTACATCATGGTTATTAATTGACTTA # Right flank : TGGTACCCCATCAACGCTTACTTCCATCATACCTCAAACACCCGAATCTGTCGACAGGCAGCCAAATCCTAAATTTCCACTCTCAAACCTTACAATCTGAACTTCGAAAATAGGCTTAAACTCTTTAGTCCCAATACATAACAAAAATCTGTCGATGCCCCCATCATTTTGCACTACTGGAGGTCGACAGATTTTTTTCCGCGTTATTATGAATCAAGGTTTTCTGTAGAAATTATCTTGTTCTTCCAATCTTGCACACTCATCGCGCTATTCGCAGGGATTATTTTCTTTTCGTATTCAAAATTCTTGTTCGAGAAATTCGCTATGACTTGTAGATTTGCGCCGAATGTTGTTTTCTGAATGAGGCGTTCTTTATCTAGCACTTCAAATCAGGCTTCCCATGCTAAAATGCTTCCTATTTTTAATATTATTGGATGCATTTTGGAATAGTCGTCATGGATTTAGTTTACGATTTAATCTTAAGAAACTGATCATTTTTG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCACATTACTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 42432-43576 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUR010000012.1 Listeria booriae strain FSL L7-1250 NODE_12_length_86741_cov_61.560579, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 42432 30 100.0 37 .............................. TCGGAAAATTCAATAAAGCATGTTCAAAAGCTGTACT 42499 30 100.0 35 .............................. ATTTAACGGTATAGCTGTTCGTCGTACCAACTTGC 42564 30 100.0 35 .............................. TATGAATAGCTTGATTTCTATTCTGTTCCAGAAAC 42629 30 100.0 36 .............................. GCCACTATCATCCGTATACGTAATCGATTCATAGTG 42695 30 100.0 36 .............................. TTGCAACCATGGCAGTTTTGTGTTTAGACTCTAAAT 42761 30 100.0 35 .............................. TCCCCACATGGTTATCGGAAATGCTCAAAATTTAT 42826 30 100.0 34 .............................. ATTTAAAGAAAGGCATCGTGCCAGCAAACAATGG 42890 30 100.0 36 .............................. CACAGCGTCGGCAACTTCTTGTTTGTCGGCTTTGCC 42956 30 100.0 37 .............................. CCGCGAAGCATGCCAGTAAAATCTACTGTGCTTTTTT 43023 30 100.0 34 .............................. CCGTTCGCTTTTGTGGGCTTGCAGGGCATGCAGA 43087 30 100.0 34 .............................. TGAATACGATACCGTCCGTTAGACTGCGACTCAT 43151 30 100.0 36 .............................. TTGAAGCAGACTTCGTTTTTGAAGGCGTGGACAACG 43217 30 100.0 36 .............................. AACGGTTCTGGAAGCAAGATAATGGCAGGGTTACAA 43283 30 100.0 36 .............................. GGGGCTGAGACATATGGTTACGATGTCGCTACGCGT 43349 30 100.0 36 .............................. ACTTTTGCGATGCCTTCACCTGCCTCTTTCGTTTTA 43415 30 100.0 36 .............................. ATAAACGGGCTGACATTTTTAGCAGTGTTAAATTCA 43481 30 96.7 36 .............C................ GATTACGATGCATCAAATCATGTTATTGCCAGTATT 43547 30 93.3 0 A....................G........ | ========== ====== ====== ====== ============================== ===================================== ================== 18 30 99.4 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATTCGAAAAGCTGGGAACCATTCCAAAAAGAAGCGTTACAACATGAAATGAGCAATTTTGAAGTGCTAGATAAAGAACGCCTTGTTCAGAAAACAACATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCGATGATTGTGCAAAACGGGAAGAAAAAGATAATTTCTACAGATAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGTATTGATACTAAAGAGGTTAAGCCTGTTTTCGAAGTTTGGGCTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCT # Right flank : TGTCAGCGAGGCATATTTTTCAGAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGAATTGAATAACAAGAGGGTTAATATCCATTTTTCAGTATTAATGGATATTAACCCTCTTAATCTATTGGCCTCTCTGATGAAAATTTTTAGTATGCAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACGGGGATTTTAACGCCTTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGACTTGCAAGGGTAACAGTTTTTGTGTCTAGTATTCTACCATTGGCATCATATGCAGTTAGTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 133394-134471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUR010000006.1 Listeria booriae strain FSL L7-1250 NODE_6_length_230968_cov_68.142994, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 133394 30 100.0 37 .............................. AAAATCGTCTGAGAAGCTTTCAACTTGTCCGCCTCTT 133461 30 100.0 37 .............................. TCTTCTAGGAACAGCAGATTGTTAAGCCCTACTGCAA 133528 30 100.0 34 .............................. TCCAGTCAATTAAAGCCGGAATTACTGGTATTGT 133592 30 100.0 36 .............................. TTTCAATCTCTCCTTTTTCATTTTGAATTGTTTCTA 133658 30 100.0 34 .............................. CTTGCATGGTGGTGGGAGCATTATAATCATCATG 133722 30 100.0 36 .............................. TCGTTTTCTGTAATTGCAAAGCCTTCTTCAATCAAA 133788 30 100.0 36 .............................. ATTGAATTGGCAAAGCGACGTTTGAAAAAGATAGAA 133854 30 100.0 35 .............................. ACCGTAGCCGTGTCTAAAGTATTGACGGCTTTAAG 133919 30 100.0 36 .............................. TCGACATAAATAGAGCGAGCAGTTGCGGATAATTTA 133985 30 100.0 37 .............................. GTCATAGCTAACATCCGTTTCCAATTTTAAAAATTCC 134052 30 100.0 36 .............................. CTAGACGAGCCACCTATATTATCGTCCTTGTATTCG 134118 30 100.0 36 .............................. TCCACATTTAGTAACCTTCTTCCTGCCGTTCCATAT 134184 30 100.0 34 .............................. AAGCCTACAACGATTACAGAATTTGAAACAAATG 134248 30 100.0 35 .............................. TTAAGCGCAATAACACTTATATCTAATTCCTTTGC 134313 30 100.0 35 .............................. CAACACTACAGCTGCAATTAGAAATAGTGTACCAA 134378 30 100.0 35 .............................. TGGTTTGGAATTCCACCATCTTTTATAAATGCCGT 134443 29 86.7 0 .................A..-...C..G.. | ========== ====== ====== ====== ============================== ===================================== ================== 17 30 99.2 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTATTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGTCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTGGTTAATAAATATACAGCGGAATAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAAGCGGGAATAAGAATCCTAAAAATCTGTCGACCGTCGGTAGCGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTCACCAGATTTGAGACCGTTTTTGGAGGTTGGATTGTAAGGTTCGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGAGCACCT # Right flank : TTAGATTGCCCACAGATGCAGTGTTTCTATCCATTTTTTACAGAAGCAATTATCATTTAACAGCTTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATTGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 240388-238921 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUR010000003.1 Listeria booriae strain FSL L7-1250 NODE_3_length_380349_cov_71.874466, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 240387 30 100.0 34 .............................. ATCAGCAAGCTCTTTTTTAAGCGCTTCAATTTCT 240323 30 100.0 37 .............................. ACAGTTTTTCTGGATCAATTGCTTTTTCATTGGCGAC 240256 30 100.0 37 .............................. AAGTTTCGTAATGTTCGGGCTGGCCTCTCGCCATGCG 240189 30 100.0 36 .............................. GTTTCTAGCTCATATCGAGGGGCTATAATTCCCTTC 240123 30 100.0 36 .............................. TTGCAAGAAATGGTGCCATTTTCTTTGAATAGCTTT 240057 30 100.0 34 .............................. GCCAATGAAACGGCGTATATACGTCTCATTCTGC 239993 30 100.0 34 .............................. CCATACTTTTTCTACGTCCTTATCGGTATATCCA 239929 30 100.0 36 .............................. CAATATCAATACGGATATAACCACGGTTTGAAAATA 239863 30 100.0 36 .............................. TTTGAAAATTCATATGATAATGTTATAAAATTTAAG 239797 30 100.0 38 .............................. TTACAGAGCATAAGATTGTAGAGCGTTCAAGATTAGAA 239729 30 100.0 36 .............................. ATGCTTACCGTAACTGGAGCAGTTTCAGGTAATTCT 239663 30 100.0 36 .............................. TCAACGCATCAAAATCTTCTTGTGTTTTTATGTGGT 239597 30 100.0 35 .............................. TTATTTATTCTCTCCTTTATCCGTCAAAAATTTAG 239532 30 100.0 36 .............................. AAGACTTTTAAATGATTCGATGTTTATTAGGCTATA 239466 30 100.0 34 .............................. TTGAAATCTACCACATATGTAAGCACTGATCTAA 239402 30 96.7 35 ............T................. GCACCAGACATAGCTAGATTCTTGTATGGCGAAAC 239337 30 96.7 37 .................A............ AACGCTGTAGCACCTCCAGAAATGAAGCTTTTGGAGA 239270 30 96.7 34 .................A............ AAAATTGCGGCAACTTCTTCCGCTTTCTTTTTAC 239206 30 96.7 36 .................A............ GAAGAAAACAATCAACCAGAGTTTGATTCTTCTGAA 239140 30 93.3 36 T................A............ ATGGGAACGACTATTATTCATGGCTATGTAAATGGT 239074 30 100.0 37 .............................. AAAATAGGATGACGGTAGATCAAGGCCAAATGGTAGA 239007 30 96.7 27 ........................A..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [238951] 238950 30 76.7 0 ......CC.A.....C.A.....CA..... | ========== ====== ====== ====== ============================== ====================================== ================== 23 30 98.0 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACACACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAAGAGTTTTGGGGCGTTGCAGATGAGAAAACATCGAATTTCTTTTAGTAGGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATACATTGGTACTAAAGGGTTTAAGCCTGTTTTCGGAGTTTGGATTGTAAGGTTTGAGAGCGGGAATTTGGGATTTGGTTGTTGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CGATCCAATTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTCCGTAGCCAGTACACGCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCATGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGTTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 359588-359953 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUR010000003.1 Listeria booriae strain FSL L7-1250 NODE_3_length_380349_cov_71.874466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 359588 36 100.0 30 .................................... ACCCGCTTTATTGGTATTTCGTTTCGTCGT 359654 36 100.0 30 .................................... AGCAGTTGTTGTATTTGTCGCATTTTCCGC 359720 36 100.0 30 .................................... CTAATGAGTATGCAGATGAAAAAGACTTAG 359786 36 94.4 30 ..............T.G................... AAACGAAAAAGGCATACATTAGAAAGTCTG 359852 36 97.2 30 ................G................... GTGAATTAGATCAAGCAATCGCCAAAGCCT 359918 36 86.1 0 ................G..........T.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 96.3 30 GTTTTAGTCCTCTTCTATTTTGAGGTACTCTAAATC # Left flank : ATCAGAATACTGTACAGATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATAATTTCTTCACCTTGAAGTGTTATAGGTAACGCCTTGCTACCGTCTTTCTTCAATAAACGCATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAGTCTTCCAAGTAAAAAGCATCAAGAACAATTTGCTCCTCCTTTACGAAAAGGTGGCTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGGCTGTCTCGTGAGTCGAGGAAGAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAACAGGTTATATCACTGTTTTAGCAAATAAATACTGCATCATTGACTACTAATCGGATGATCATCACTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTATCCACAGTAGAG # Right flank : CTTTATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAGCGCCTTCACAATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTATCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATCACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGGTCATATTCAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATGTTTTGGTGATAAATAATTTAAATGTGCTATATAGTTCCTTCCATTCACTTTACTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGAGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCG # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTATTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //