Array 1 9669-8435 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGTM010000048.1 Pseudomonas aeruginosa strain MIMA_PA2.1 NODE_48_length_47256_cov_12.118252, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9668 28 100.0 32 ............................ GGTCGGTGACGGCACCATTGGCGGCCAGGTCA 9608 28 100.0 32 ............................ TCACGAATCACGAGAACGGTCCGATTCCGGGG 9548 28 100.0 32 ............................ GCTGAACAAATTGCCGAGTTCGAAGCAACTCG 9488 28 100.0 32 ............................ TGTTCCGAAGGCGTCAACGAAGGCTAATGACC 9428 28 100.0 32 ............................ TGATAAAACGAGTCAGGAAGGCCCCTGCGGGA 9368 28 100.0 32 ............................ ATATCAGTTTGCATGGTTTGCTCCTACCAAGC 9308 28 100.0 32 ............................ TTGCATCGCACCCTCCTGCTCACCGACCAGGC 9248 28 100.0 32 ............................ TGAACGTTCACGCATCACGCGCCTTTCCGGCC 9188 28 100.0 32 ............................ GAGCAGTTCTGGCCGTTGCTCTTAAGCGTGTA 9128 28 100.0 32 ............................ AATTGCGGCACGATTGAGGATCACCCAAGCTA 9068 28 100.0 32 ............................ ATGAGTCGCTTGATCCCGTCGCGCATGAATGT 9008 28 100.0 32 ............................ ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 8948 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 8888 28 100.0 32 ............................ AGGCAGACGAGTACGCGCGGTCTCGCGAAGTG 8828 28 100.0 32 ............................ AGAACATGGCCCGGCTCCCGACGTTGCTGCGG 8768 28 100.0 32 ............................ ATGACGCAAGACGAGCTTGTCCGCCTTCTGGC 8708 28 100.0 32 ............................ GTATGCCCGCGAAAGCGGCGCCTGGGCGGAGC 8648 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 8588 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 8528 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ACGGAT [8504] 8462 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAACACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGGGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGATTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 31768-32336 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGTM010000067.1 Pseudomonas aeruginosa strain MIMA_PA2.1 NODE_67_length_32558_cov_13.808134, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 31768 28 100.0 32 ............................ GCCAAGCGCCCTGTCTCCACTTACATGCACCG 31828 28 100.0 32 ............................ AGTCGGTATCCCTTCCGCGTTATCGGTTCGCT 31888 28 100.0 32 ............................ AGCCAGTTGCAGCTATCCAGCATGCGCATTGC 31948 28 100.0 32 ............................ ATCCTCATGGGCGCAATGACAAATGACCCCGC 32008 28 100.0 32 ............................ TACTCGACTCGCAGTAAAAGCTCGAGCGAATC 32068 28 100.0 32 ............................ ATAAATGGCCCATTGACGCCGTGCTGCTTCTC 32128 28 100.0 32 ............................ TCGCAGAGCGCCGCGCACAGACAGTCGTCTGT 32188 28 100.0 32 ............................ TGGCGCAACCCTCCCCGGATGCCCCATATGCG 32248 28 100.0 33 ............................ GTATGCGGAAGAAAAATCCGGCGAGCCCTTCGA 32309 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGGAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGCGCTA # Right flank : GTATGCGGTGACCTGCCCCCAGTTTTAGTACCGCTGCCTAGTTAGTAGGCCCTGGGGTTGATATTAATTTTTCCTGCTTCAGTTGCTGCTGGCGAGTTCGCCAACTTGCAGCAAATTCTGCCGGGGTGAGATTGCCAATCGCGCTGTGCGGTCGGTGTTCGTTGTAATCCCGCCGCCAGGCCGCGATGCGGATTCTCGCTTCGGCCAGCGAACAGAACCAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //