Array 1 12634-12784 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV813702.1 Rothia sp. HMSC061E04 Scaffold96, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12634 29 100.0 32 ............................. AGGAAGAACAGGCCGAGCGCGAGCAGAAGGAA 12695 29 100.0 32 ............................. TCTGCCATAGTCTCGAAGTCGTTGTTTTCCCA 12756 29 93.1 0 .......T....................C | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGTTCCCCGTATGCGCGGGGATGAGCCG # Left flank : AAAATCGCCGATTTTTTCACTATTTCCTGAAAATCAGAGGGGATAGTGAAAAAATTGGCGATTTTTTGCACTATTTTTCTCGCCATTCCCATATTTAGGGCGGCAATCTCCAGCGCCCGAATACCCGGAACAGTCCTCGTTTCTAGGTGCTGTAGTCCAGTCTAAATCTTGATGGCATGAGGACTGCTGGGCACCTCAAAAATAGCCCTTATCTTGTCAGGGGTATCCCCTAATATTCGTGCGGAGGCTGTGCGGATGCATGAGGCGCAACTCGCCCCCGGCACGGGGGAGAGTCTAAACGGACGCGGAGTTGCTGACTCTGGTGCTGCCGGTTCGGTGGTGTTGGGGGCTGTGGCGTTGGATGCGTCAAGGCCAGCCGCCACGGGCGGCGGGTCACCGTAGACGAGTAATCGTCTACTCATCCCCTTTTATATATGTATACGTGTGAAAACTGAATAATTTTTTGGTCTTTGGCTGGGTATTGCGACTTGTGGCTGAGT # Right flank : CGACAGACACGCTTATATGTTGGATTTTGGTCACATTATTGTATATTTGTCCCGTACCCAATTTCAGTGCATGCCCGAGAAGGCAACATGTCAGCCGACGTTGGCTGTTCATTATAGACGGTTGAGCTCGACCCAAGCATGCCTGAAGCGCACCGACTTCTCGGGTTCATCCTTATGCAATTAGGGGCCCCTCGTCGCGCAAGAGACGAGTACGCGAAAGCAGCAAATCTTGGGGATGATGAGGCTGTCCTGGACATGCTACGCGCATCATATGAGGCGGAAACGCCCGAATGGACTGTGCAAGCCAGATCCCGCGCCGCGCAGGCGCAACTCGATGCGAAGTCGAAGGCTGAGGGAGAGCTTTTGCTCATGCAGGCTCGGACTGCTCTCGATCCGAGCATAGATGTCCAGATAGCTCTCAACGACCTCCAAGCCCGTTTTCCGAACGACGAACTTATTAACGAGGCCGTACACCTGAACTCGAATACCGAATGACTGGA # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 300629-300229 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV813706.1 Rothia sp. HMSC061E04 Scaffold156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 300628 36 88.9 34 NNNN................................ GATGTCCTGGGCCAGGTGCCCGGCGATGGGCTGA 300558 36 100.0 39 .................................... CCAGCTTGCCCAGCACGAAACCGCCGTCTTCGCGCTGAT 300483 36 100.0 36 .................................... CCTGAATTGAGTAAGCCTCAATTTATTTTGGAATTT 300411 36 100.0 39 .................................... CCAGCTTGCCCAGCACGAAACCGCCGTCTTCGCGCTGAT 300336 36 100.0 36 .................................... AACGGCGCGACGCCTTATCAGTACTCGACCCGCACG 300264 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 96.3 37 ATTTCCCTTCCTTTTGGGAAGGGCTTTCATTGAGGC # Left flank : NNNNNNNNNNNNNNNTTTCCCTTCCTTTTTGGAAGGGCTTTCATTGAGGCGGGTGGAGAGGCAACCCACCCGGTGCGGGGAGGACATTTCCCTTCCTTTTGGGAGGGACTTTCATTGAGGCTCACGGGCGGCCACCGCGAGGGCGGCGCGGAACTGGCATTTCCCTTCCTTTTGGGAAGGGCTTTCATTGAGGCACCCCCGAGCGCCCAGACCTCCGGCGGGAATAGGTCATTTCCCTTCCTTTTGGGAAGGGCTTTCATTGAGGCGTCCGTGAGGATGGGCAGCTCTATGCCTCCGAGACTTTCATTTCCCTTCCTTTTGGGAAGGGCTTTCATTGAGGCACGTCAATGCTCACGTACAGGGCTGTGATGCTCTGGATTTCCCTTCCTTTTGGGAAGGGCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTCCTTTTGGGAAGGGCTTTCATTGAGGCGCAGAGTCCTAACCGTGATGCCTTGGGCGCTCTGAATTTCCCTTCCTTTTGGGAAGGGCTTTCATTGAGGCTCGTAGCGGTGTTGGCACCGATCTGTACTACGGAGAATTTCCCTTCCTTTTGGGAAGGGCTTTCATTGAGGCGCCACCGGCGTTCACCTGCACTTCCAGATCATGCTCATTTCCCTTCCTTTTGGGAAGGGCTTTCATTGAGGCGAGGTCGATACCCTTGCCTACACCGTCCTTGGGAACCATTTCCCTTCCTTTTGGGAAGGGCTTTCATTGAAGCGCAGCGAAAATTGATGAGCTGCACTTGCCTGACCGTAATGTCCCTATATTTTTTTGTAGGGGCTTTCAATAAGACAAATCAATA # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTGGGAAGGGCTTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 300788-301044 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV813706.1 Rothia sp. HMSC061E04 Scaffold156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 300788 37 100.0 38 ..................................... AAAGTCTCGGAGGCATAGAGCTGCCCATCCTCACGGAC 300863 37 100.0 35 ..................................... ACCTATTCCCGCCGGAGGTCTGGGCGCTCGGGGGT 300935 37 100.0 36 ..................................... CCAGTTCCGCGCCGCCCTCGCGGTGGCCGCCCGTGA 301008 37 94.6 0 .............T..C.................... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 98.7 37 GCCTCAATGAAAGCCCTTCCCAAAAGGAAGGGAAATG # Left flank : GCGTCGCGCCGTTGCCTCAATGAAAGCCCTTCCCAAAAGGAAGGGAAATATCAGCGCGAAGACGGCGGTTTCGTGCTGGGCAAGCTGGGCCTCAATGAAAGCCCTTCCCAAAAGGAAGGGAAATAAATTCCAAAATAAATTGAGGCTTACTCAATTCAGGGCCTCAATGAAAGCCCTTCCCAAAAGGAAGGGAAATATCAGCGCGAAGACGGCGGTTTCGTGCTGGGCAAGCTGGGCCTCAATGAAAGCCCTTCCCAAAAGGAAGGGAAATTCAGCCCATCGCCGGGCACCTGGCCCAGGACATCGCCTCAATGAAAGCCCTTCCCAAAAGGAAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGCCCTTCCCAAAAGGAAGGGAAATCCAGAGCATCACAGCCCTGTACGTGAGCATTGACGT # Right flank : GTCCTCCCCGCACCGGGTGGGTTGCCTCTCCACCCGCCTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAATATTCAGAGCGAACCGTCGCGGAGCCGTCATCATCGCCTCAATGAAAGCCCCTCCGAAAAGGAAGGGAAATCTGCGTTGGCTCGTGAGGGCATGCTCGGCGAATCTGACCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTTGAACTTTTCGCCGGTGCCCGGGTGATTTGCCAGCCCTCAATGAAAGTCCCTCCGAAAAGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAAGCCCTTCCCAAAAGGAAGGGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.70,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 301555-301797 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV813706.1 Rothia sp. HMSC061E04 Scaffold156, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================ ================== 301555 26 100.0 46 .......................... GAAATCGGGAGGAAAAAGGGTCCAGAGTGAATGCACCTTGGCCCTC 301627 26 100.0 45 .......................... GAAATCAAATCGCCCCTACGGAGTGCATGAGGTGTGGCAACCCTC 301698 26 100.0 48 .......................... GAAATCGGAGCGTGTCAAGTTGCGTGTAGAGCTTATCGCGTGACCCTC 301772 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ================================================ ================== 4 26 100.0 47 AATGAAAGTCCCTCCGAAAAGGAAGG # Left flank : ACCGGGTGGGTTGCCTCTCCACCCGCCTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATGAAAGCCCTTCCAAAAAGGAAGGGAAATATTCAGAGCGAACCGTCGCGGAGCCGTCATCATCGCCTCAATGAAAGCCCCTCCGAAAAGGAAGGGAAATCTGCGTTGGCTCGTGAGGGCATGCTCGGCGAATCTGACCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTTGAACTTTTCGCCGGTGCCCGGGTGATTTGCCAGCCCTCAATGAAAGTCCCTCCGAAAAGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGGGTTGAGGGGGTTTGGGGTGGTTAGTGAGAGAGGTTCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCACGCTTCACGCCTGCCTCACCCCAACGTTCCCGGATCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGCCGGGTTCGTCTATGGCTGGTAGCTTGCCTAGTGCCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGAGGTCTTCATGGTTCGCTGCGTCGCCCGTCCAGCGCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTTGTGCGTGCTACGTATCTGCTGATGGGTGATTCGGCACCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATGAAAGTCCCTCCGAAAAGGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 302295-301895 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV813706.1 Rothia sp. HMSC061E04 Scaffold156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 302294 36 100.0 38 .................................... TGCCGAATCACCCATCAGCAGATACGTAGCACGCACAA 302220 36 100.0 36 .................................... CGCTGGACGGGCGACGCAGCGAACCATGAAGACCTC 302148 36 100.0 36 .................................... GCACTAGGCAAGCTACCAGCCATAGACGAACCCGGC 302076 36 100.0 37 .................................... ATCCGGGAACGTTGGGGTGAGGCAGGCGTGAAGCGTG 302003 36 100.0 37 .................................... AACCTCTCTCACTAACCACCCCAAACCCCCTCAACCC 301930 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 98.6 37 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGATGGTACGGGGTAAGTCAGTCGCCATCCCTAGTGGCCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTCGCGCCGCCCGCCTCGCCGCCCGCCGGGGCTATCCGACCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTCAACCCCAGGAAGCCAGAATCAGCCTCCACAGGCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCTTTTCGGAGGGACTTTCATTGAGGGTTGTGCTTTGAGGAAGCCGCTAACCTTCGGGTTGGCGG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCCTTTTCGGAGGGACTTTCATTGAGGGTCACGCGATAAGCTCTACACGCAACTTGACACGCTCCGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGTTGCCACACCTCATGCACTCCGTAGGGGCGATTTGATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGGCCAAGGTGCATTCACTCTGGACCCTTTTTCCTCCCGATTTCCCTTCCTTTTCGGAGGGACTTTCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCTTTTCGGAGGGACTTTCATTGAGGGCTGGCAAATCACCCGGGCACCGGCGAAAAG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 5 302460-302712 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV813706.1 Rothia sp. HMSC061E04 Scaffold156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 302460 36 88.9 34 NNNN................................ CCTGTGGAGGCTGATTCTGGCTTCCTGGGGTTGA 302530 36 100.0 38 .................................... TCGGATAGCCCCGGCGGGCGGCGAGGCGGGCGGCGCGA 302604 36 100.0 37 .................................... GCCACTAGGGATGGCGACTGACTTACCCCGTACCATC 302677 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 94.4 37 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Left flank : GAGAGGTTCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCACGCTTCACGCCTGCCTCACCCCAACGTTCCCGGATCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGCCGGGTTCGTCTATGGCTGGTAGCTTGCCTAGTGCCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGAGGTCTTCATGGTTCGCTGCGTCGCCCGTCCAGCGCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTTGTGCGTGCTACGTATCTGCTGATGGGTGATTCGGCACCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCCGCCAACCCGAAGGTTAGCGGCTTCCTCAAAGCACAACCCTCAATGAAAGTCCCTCCGAAAAGGAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTCCCTCGGCAGGAACGCAATCATGACCTGCTGAACCTCCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATAAAACGCTCTAAAACGCTCTCTATGCCATTTTGCACCGCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTTTAATTAGTTTTATTTAAGAATTACTGTATATAGACCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATCCTCGGTGGAGCATGTGCCCACTGGGCATTATGCGTCGACCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATAGCTACCCGAAAATAGCCCGCAACCATGCGGCAGAAACGGGTGCTTCGCGAGAACCTCGCGGAGGCTACACGCAAA # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.50,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 6 303136-302879 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV813706.1 Rothia sp. HMSC061E04 Scaffold156, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 303135 36 100.0 39 .................................... TCGACGCATAATGCCCAGTGGGCACATGCTCCACCGAGG 303060 36 100.0 36 .................................... TCTATATACAGTAATTCTTAAATAAAACTAATTAAA 302988 36 100.0 38 .................................... CGGTGCAAAATGGCATAGAGAGCGTTTTAGAGCGTTTT 302914 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 100.0 38 ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Left flank : TTTTGACAAGGTGTTTACTGAGGAGATGCTGGCTGGTGGTTATCAGAAGAAGTATTTCCGTGCGGTGTCTCGTTTGACTGCGTTGGCTCGTGAGGGCATGCTGGGTGAGGAGGCGGAGCGCTAGTTCCGCTGTTCGCCGGGGCCGAGCTTTGGCCGGCTCGGGTTTTGATGCGCTGTTCTTTCTAGTCCCGTGAGACTCGAAGCTCGCCCGGTTTGCATGGTTAGCTTGATTAGTCTGGTTTACCTGAACCGCGCCAACCCCTCTCATACGTGAGGACCCTCGCCGGGTCGCTTAGGAAGCCCCCGGCGGGGGTCTTTGTGTGAGCGAGAACCTGGTACGTGACGGGAACATGGCGTGTCGCTCGCATGGTTTCTTCCCTTGCCAGGGAGTTATGCGGGGGTAGATGTGGTTGGAGTGTATAATTTTGCGTGTAGCCTCCGCGAGGTTCTCGCGAAGCACCCGTTTCTGCCGCATGGTTGCGGGCTATTTTCGGGTAGCT # Right flank : GAGGTTCAGCAGGTCATGATTGCGTTCCTGCCGAGGGAATTTCCCTTCCTTTTCGGAGGGACTTTCATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATGATGGTACGGGGTAAGTCAGTCGCCATCCCTAGTGGCCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTCGCGCCGCCCGCCTCGCCGCCCGCCGGGGCTATCCGACCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGAAATTCAACCCCAGGAAGCCAGAATCAGCCTCCACAGGCCCTCAATGAAAGTCCCTCCGAAAAGGAAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCCTTCCTTTTCGGAGGGACTTTCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //