Array 1 12197-11390 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIN01000306.1 Acinetobacter baumannii strain ABBL147 contig-4000074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12196 28 92.9 32 ...C........T............... ATAATCTTATAGGTGTCACGGCCATTAGGTTT A,A [12190,12194] 12134 28 85.7 32 ....C.....AT.C.............. TAGCCCTTCGGCTTGATGATTATTGAGTCTTT 12074 28 92.9 32 ...A...............G........ TATCGTGTATTTGATTCTAAAAAGAAAGTGAA 12014 28 89.3 32 ...A........CC.............. AAACTCACGAATAAACTGTTCTGGTTTCATTG 11954 28 96.4 32 ...A........................ CCCAAACTTCCCGACCATTCTCGATATAAGCA 11894 28 100.0 32 ............................ TGCGCCAGTCGGTGCCGTACCTAAATTTACTG 11834 28 100.0 30 ............................ TTTAAGCAAAAAAAGCCCCTTAAAAGGAGC 11776 28 100.0 32 ............................ CAGATCGTTGACGAGCTAGGCGCGACACCAGA 11716 28 100.0 32 ............................ TTCAATTGTGAAGTCTTTGCCCAGTAATGAAG 11656 28 96.4 32 ...A........................ ATTCGATAGACTGATTCTATAAGCTTATTTGC 11596 28 100.0 32 ............................ TTTCACCGAATGGCGATGGATTCAAGCCACAG 11536 28 92.9 31 ........C..T................ ACATTCAAAGAGGCTCATCGAATCCAATCGA 11477 28 82.1 32 A..T........TC..T........... TTATCTTGAACCAGTGAAGCCGCGTTTTTACT A [11472] 11416 27 82.1 0 ...TC.......T.........C.-... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 93.6 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : ATAAAATATATATATAACTATTAAGGGATATACTTTACTGATTTCAATTAAGAGTTATACTAAATGCTTAATCCATCAACTGAGATGGTTGAGAAATTAATAGTTATTATTAATTTTTA # Right flank : TTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAATTATGCATGTCATTCTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGATATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTGCGAAGAATGAAGCTTGCATGGGTTGTAGGAGCAAGACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGTCAAAGCAAGTAGCTTGTTGGCGGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCATCCCAACATTTTCAG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [14-14] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5462-10192 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLIN01000086.1 Acinetobacter baumannii strain ABBL147 contig-14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================== ================== 5462 28 100.0 32 ............................ TTACAACACGGCCCAAAAAGTACGTGAAGTAC 5522 28 100.0 32 ............................ AAAACAGTTGAAGCATTACGTTTACGACGCTC 5582 28 100.0 32 ............................ ATGCTGCATTCACATTTCGAGAATCGATTTGT 5642 28 100.0 32 ............................ TAAAGGCGGTCATAGTGACCGCCCCATATCGT 5702 28 100.0 32 ............................ TCAACCTTTCTTTCTCTGGAGCAAATCGGTCA 5762 28 100.0 32 ............................ AGCAGAATGTCTTGAGGCAGCCCGCGAAAATC 5822 28 100.0 32 ............................ TCTATAACAGCAGGTGAATAGCCCTGCCCCTT 5882 28 100.0 32 ............................ AAGAAGAAAAAGGGGTTAAACCTGCCTACCCA 5942 28 100.0 32 ............................ TTCACATCTTTTCTTCTGCAACCATGGTAAAG 6002 28 100.0 32 ............................ TTCAAAAACGGCGTTTCTGCAATGATCGATGG 6062 28 100.0 32 ............................ AAGGATAATCAGCACAACATCCGGTTTTAGAT 6122 28 100.0 32 ............................ TATTGCGCCATCTGGGGCATGTTCTTTAATAA 6182 28 100.0 32 ............................ AGAAACTCGTAGCCTTACCAGAAACCTTATCT 6242 28 100.0 32 ............................ ATCCCAGTTGTAAGGAGGATGATCATGGATTT 6302 28 100.0 32 ............................ CAAAGCCCAGTTTGATTACGTCAAGGTCGAGC 6362 28 100.0 32 ............................ GGTAGTCATTTGTTCCAAGAAAAATGATTACA 6422 28 100.0 32 ............................ CCAGCCCGAACAAATGGCACAGCCGTTATTCC 6482 28 100.0 32 ............................ ATCAATCATTGCGGAAATCCCGTCTTTATAGG 6542 28 100.0 32 ............................ AAATACTGAGTTGATTCCTTCGCTTATGACAT 6602 28 100.0 33 ............................ TTAAAGCTGAAAAAGCATTATCAGATAATGCAC 6663 28 100.0 32 ............................ TTTATCCGGTTATCGCGATGCAGTTTATGAGC 6723 28 100.0 32 ............................ TGATCCCTCAATGTCAGTCTCACGATAGCTAA 6783 28 100.0 32 ............................ ACTAACGGCTGAACTGGTGGTCGACTAAGCAC 6843 28 100.0 32 ............................ ACTGTTGAACTGATTAGTGCATAACCGTCTGT 6903 28 100.0 32 ............................ TACGGGGGGAGTGTGGCGGGCGCAGTTTCGGC 6963 28 100.0 32 ............................ ACAAAGCTTGATGACATGGGAGCAACTGCAGC 7023 28 100.0 32 ............................ ACATGCGGTCCTCTGGTAAATCAATACCTGTG 7083 28 100.0 32 ............................ TTCATTGAGGTTATAAATATAACGAACTGTTT 7143 28 100.0 32 ............................ AATACCACTATTCGATGAAAACGCCTAGCCAA 7203 28 100.0 32 ............................ CAAGCCAACCTTTCTCTAAAGATGTTTGGTTC 7263 28 100.0 32 ............................ ATCTGGACCGCTACCATGTGCGAAACTTGAAA 7323 28 100.0 32 ............................ TATCGGGCGCTTGTTCTTTTGAGGTGTCTCAT 7383 28 100.0 32 ............................ ATGAGAGAGCGAATTTTTGCATTAGTCGATGT 7443 28 100.0 32 ............................ AATATGCGACAGATCTAAAAACGCTTGAGGAA 7503 28 92.9 32 ...AC....................... AGCAAAGTTTCAGGACAAAGTTATAGCGCAAT 7563 28 92.9 32 ...AC....................... TAGCTGTAACTAGGGGCACACATTCATAGGAG 7623 28 92.9 32 ...AC....................... ACGATCATCATTCAGAGAATTTCTTAAACCTG 7683 28 92.9 32 ...AC....................... AAAGCAGAAACAGCAGAACCCAGAATCTTTGT 7743 28 92.9 32 ...AC....................... TTTAGTTAGCCCAACAAGAAATTGATCAAGAA 7803 28 89.3 32 ....T.......AT.............. TTTCTTTAATAGGTCTCTTTCATTGCCAATGA 7863 28 89.3 32 ....T.......AT.............. TTGTATTGTTGCTGACTTAAACCAATTCTTAC 7923 28 89.3 33 ....T.......AT.............. CTTGAGAAATTCCATTCTCTTTGGGTACAGGTA 7984 28 89.3 32 ....T.......AT.............. ACAATATAGATATGCTCAGCGTTTTGAACCGA 8044 28 89.3 32 ....T.......AT.............. TTGTATTGTTGCTGACTTAAACCAATTCTTAC 8104 28 89.3 33 ....T.......AT.............. CTTGAGAAATTCCATTCTCTTTGGGTACAGGTA 8165 28 89.3 32 ....T.......AT.............. ACAATATAGATATGCTCAGCGTTTTGAACCGA 8225 28 89.3 32 ....T.......AT.............. TTTGTAACCACCAGTTAAAGTATTGACTAAAT 8285 28 89.3 33 ....T.......AT.............. TTTGACAAAAAAAGTGTTTGGATGCTTTCGCCA 8346 28 89.3 32 ....T.......AT.............. ATTGAGAATCCAGTAGGCCGAATAGAAAAGCT 8406 28 89.3 32 ....T.......AT.............. TGTTTTGCTAATTTATCAATATCGATTTTCAC 8466 28 85.7 32 ...AC.......AT.............. ACAGGGGTCAAGTTCAGAAGATTTACGTTACA 8526 28 92.9 32 ...GC....................... GTCATAGTCCTTCTGAACACCAAATGTATAAG 8586 28 92.9 32 ...TC....................... GGTATTAGTGCGAATTGGCTTTTAGCCCACGC 8646 28 89.3 32 ....C.......GT.............. TTAAATGCTCAACTATTTCTGTAGCTAATGGA 8706 28 85.7 32 ...GC....T..A............... TTCAAATGATTTAATGAGCTTGTAGCCATTTT 8766 28 85.7 32 ...GC.......TT.............. ACGTCTTCTAATGATGGACTTTAATCCAATAT 8826 28 85.7 31 A..GA.......T............... ATCTCACTGAAGATATGACCATCACTTTCTT 8885 28 89.3 32 CG..C....................... AAGCCATTTACTTTGATAAAGCGACACATAGC G [8887] 8946 28 89.3 32 ....T.......AT.............. AGCTTCAACACGTGTGCTATTAGGCGGCAAAG 9006 28 89.3 32 ....T.......AT.............. ATGAGCAAATTATCAATTGATCTATCTGCAAG 9066 28 96.4 32 ....T....................... TAGACGGTGTTACCTGTAGGCGGTGTCTACTG 9126 28 89.3 32 ...TC........T.............. ATCGTTTGAATAATATGGACAATCCAGCCAAT 9186 28 96.4 32 ............T............... GCAGCATCAAACGAGATATTGGCTAACATATT 9246 28 85.7 32 ...GT.....A..............C.. CAAATAGTTTTAGCTATCTGAGCATTTAATTT 9306 28 96.4 32 .............T.............. TTCATCACGTAGCCTTTTACACGCATCTTGCG 9366 28 85.7 51 ....T.......AT......C....... TGTACGCTGAGTATTGATATTGACATTCAGGGCATTCAGAATTTGGCGCTC 9445 28 100.0 32 ............................ TATATATACTATTTTCTCCGTCATTTTCTTTT 9505 28 89.3 32 ...TC...................A... TGATAGTTCGGAGCATGTAAATCTCCAAAATG 9565 28 85.7 31 A..TA.......A............... CCAGTTTGCTGAAAATCACCAATACGGTCTT G [9588] 9625 28 89.3 32 ...TC......T................ GATTCTATGAGCGTGACCATGACTCTATTTAA 9685 28 89.3 32 ...GC........T.............. ATTATCCAGATAAAACCATATCTACAAAGTGG 9745 28 92.9 32 ............AT.............. GATCATCTACAGTGATTGAATAAACGGTTTTT 9805 28 82.1 32 ...GC......TGT.............. GATTCTATGAGCGTGACCATGACTCTATTTAA 9865 28 89.3 32 ...GC........T.............. ATTATCCAGATAAAACCATATCTACAAAGTGG 9925 28 92.9 32 ............AT.............. GATCATCTACAGTGATTGAATAAACGGTTTTT 9985 28 82.1 32 ...GC......TGT.............. GATTCTATGAGCGTGACCATGACTCTATTTAA 10045 28 89.3 32 ...GC........T.............. ATTATCCAGATAAAACCATATCTACAAAGTGG 10105 28 92.9 32 ............AT.............. GATCATCTACAGTGATTGAATAAACGGTTTTT 10165 28 82.1 0 ...GC......TGT.............. | ========== ====== ====== ====== ============================ =================================================== ================== 79 28 94.2 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : | # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-78] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //