Array 1 285-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV792665.1 Neisseria sp. HMSC15G01 Scaffold28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 284 32 100.0 18 ................................ NNNNNNNNNNNNNNNNNN 234 32 93.8 35 NN.............................. ATTATGGCGGTCAGCGAGAAACAATGCTGGTTGAA 167 32 100.0 34 ................................ TGCTGCCGGTCGGCCGCAACCTCTACAAAGAGTA 101 32 100.0 35 ................................ CATCACAAAATGCAACGGAAAGGATTTGCAACAGG 34 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 98.8 31 CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTTAGGCGGCTGTGTGTTGAAACAAAACATGGGCAGAATTTAAAACATGGGTAGATGC # Right flank : CAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.32, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3136-1417 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV792665.1 Neisseria sp. HMSC15G01 Scaffold28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 3135 33 97.0 34 N................................ CCTTTTGAAGCTTCTTTGACGGTTGAATTAGTGA 3068 33 100.0 33 ................................. CCGACGGCTCGTATCGACCAACTGGCGGAAAAA 3002 33 100.0 19 ................................. NNNNNNNNNNNNNNNNNNN Deletion [2951] 2950 33 97.0 33 N................................ CGCCCAACGGCTACGGCTGCAAATGCTCGGTTT 2884 33 100.0 32 ................................. AACGGCTCGCCGTTTGCTTGTGCTGATTTCAT 2819 33 97.0 34 .A............................... GGGCGTGCAGAGTAAAAGCCTTGCAGGGGAGACT 2752 33 97.0 33 A................................ TTGGTATAAATGTGTTACAAACCTTGATAATCC 2686 33 100.0 35 ................................. TTGGTATAAGTGTGTAACGAGCCTGGATAATCCCG 2618 33 100.0 33 ................................. CAAAATGGTGCAAAGGTCGGCAGTTAAGAGATA 2552 33 97.0 33 T................................ ATTGGAGATTCTCCTTACTCATAATTTCACTTA 2486 33 100.0 33 ................................. CATAAAAACGCAGAGCGGTTCATAGCTGATTTG 2420 33 97.0 33 T................................ TATAAAAGCTGTTACCAACTTGGCCCGGATAAC 2354 33 97.0 35 G................................ AGCAACAAGATAGCCTGAATACGCATTACAAAAAT 2286 33 100.0 33 ................................. AAATGCTCGAAAGCAGCTTTATCGACTAAGCCG 2220 33 97.0 35 G................................ ACTCAAAAAATTGGTTTGTCAACTCGCTATGGTTT 2152 33 97.0 33 G................................ AGGCAAAGCAGCATAAGCAGATGTGGCCAGTGA 2086 33 100.0 34 ................................. AAGGTGTGTATGTTTTGAAACGAGATTGCGTACA 2019 33 97.0 35 A................................ AAGTTGCTTCAGTGCTTTGCGTATCAGCAATATAA 1951 33 87.9 34 G...........TA...G............... TTAGTATAGGGTTTATACATGCGCAATATATCCC 1884 33 90.9 20 ............TA...G............... NNNNNNNNNNNNNNNNNNNN Deletion [1832] 1831 33 90.9 34 ............TA...G............... TCGCCAAACAGTGCGTCCATCGCGCCCAATCGGT 1764 33 90.9 33 ............TA...G............... GGAATCCGCTGATTGATGCGGTGTGTAATGCCG 1698 33 87.9 34 T...........TA...G............... GTTGAAAAATCCTGCCAGCTTCTCAAGCTCGTTG 1631 33 84.8 17 A...........TA...G..............N NNNNNNNNNNNNNNNNN Deletion [1582] 1581 33 84.8 33 NN..........TA...G............... ATCCGTGCCGCATCCATGCTTGCTGAAGAAATT 1515 33 87.9 33 T...........TA...G............... ATTGCTTCTGCCGCGATAGTCTCGCCGTCCGAA 1449 33 87.9 0 T...........TA...G............... | ========== ====== ====== ====== ================================= =================================== ================== 27 33 95.0 32 CCCAGCCGCCTTCGGGCTGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGTTTAAAAAAGAATGATAAAGAAATTCTCGATTCCAGCCGCCTTTAGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.10, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCTGCTGTGTGTTGAAAC # Alternate repeat : CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.50,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 81912-81611 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV792680.1 Neisseria sp. HMSC15G01 Scaffold499, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 81911 36 91.7 31 NNN................................. AGAGCAACTCGTGATAAGCGGTCAGCAGATA 81844 36 100.0 30 .................................... TGGGTGCGTGCTGAGGAGTATGGAAATATA 81778 36 100.0 30 .................................... CAGGGATACCGTGAATAAATATTTTACGTA 81712 36 100.0 30 .................................... TTTGGGGGGCTGGTACGGCGACGACAGATA 81646 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 98.3 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CAAGCGTCAACGGCAAAGAAAAGCTGACAAGGTATGGCAACAGAAAACTACGCGGCGCCCTCTTCATGGCCGCCATGGTAGCCATGCGTCAAAATTACTTTCCCGACTTCACCAAAAGACTGCAAAAAGCCAAAAAGCCCAAGATGGTTATTATCTGCGCCCTGATGAGAAAACTACTCGTCATTGCCTATCATCTGCACAAAAACCAAACCGACTTCGATCCGAGTCGGTACAAACAAGCGTAAAGAGCCTTAACAAAAACGCAAAAGCTACGCGGATAATCGTAAAATATTCGCGCGGCCAATTGCATTCTGTAAAAATTGCAAAACTAAATAAACAGGAAAAACAATAATATACAAAAATGACAGTAAATTACTATTGCATGTTAAAGTAGCATCTTTCTCATTTCGCAGTGCTACAATAAGATAAATTTACTGTTTCTGTCTTGGCATGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTNNNNNNNNNNNNNNNNN # Right flank : ACTTCGATGGGAAATCCTTATTCTATAAGGGTTTCCCGTTTTATTTTGTCTAATAAAATGAGCTTAAAATAATAATAGTTGGTCGGAATTTACCCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGCAGTTTCATGGTGGCATATTGCTTTTCTGTTACTTCCAAACAGCGGATTGAACCTTCTTGCGGTAGGTTTGCACATAGCCTATTGTGGTGTTTTTGTAACGAGTCTCGACCTTTGACAATACGGCTGTATACAGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGTTGTGGTGACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGCAGTTTCAGCTGTTTGGCGTTTTTATCGGTTACGCTGGCTTGAAATGAGGAAATCATTTTGTCTATGGCAGCCAAGGTG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.97%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 1 1-564 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV792697.1 Neisseria sp. HMSC15G01 Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1 30 90.6 35 --.........T.................... GGGGCGGAGGAAGGCAGATTTTGCAGTTTCTCCAC 66 32 93.8 35 C..........T.................... GTCATTTAGAGGTAAAGCCAGATATAAAAATGGAC 133 32 93.8 35 C...T........................... TTGTGATTCCTCTAAAGAACAACCGCAAAAGACAA 200 32 96.9 36 .....................A.......... TTTTAATTGTTGCAGCAAATTAACCAGCTTATAGAG 268 32 100.0 34 ................................ TTCGCGCATCAGGCGCGTGCCGATGCGCGTGAAC 334 32 90.6 33 C.....A.....G................... CGCAAGGGCGATATGATCGTGATTTCCAACCGT 399 32 90.6 35 C.....A........T................ CGCCCATGATGCTAAAGCAACCTTGGAAAAGCTTG 466 32 81.2 35 A.....A.....G..TC..........A.... TCTAGCAGCTACAAACTTTATGCCGACCTATCCCG 533 32 84.4 0 .....A......G..A...........C...T | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 91.3 35 TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : | # Right flank : TATCGTCCAAGCAGGCCGCTCTTCTTTTGATCCTTCGCTTTCCGAGGCCTTAGTGAAAGCAGTAGAGGATATTAGAAGCAAGTTATAAAGGTTAATCAATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTCTATTTACATATTAAATTTAATATCATATTATCATTGCATATGTATCAATTTGAATTTTTTAGAATTTCAATATGAAACCCCTAATTTACTACGTCCATTCCGTCCAATATGAACTCGGCAATCTCTTACCTTACGAACATTGGCAAACCTTATAAAGCGATTCGGTAAATGTTGGCGAAATGGTGGCGGAGTTTGCCCGAGTTTTTGGGGCACAGGAAATTACCTGTTAAACGGGACAGATTCATGACTTAGGGAAATATTCGGAAGCCTTTAATTATCGATTGCATGGCGATCCTTCAGGTGATCATGCTACCGCCGGAGCGAAAATTGCAAAAATGCTTGCTTTAGAGTGGAGGTCAAA # Questionable array : NO Score: 3.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : CCTTTAGGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //