Array 1 495-166 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPY010000020.1 Sphaerotilus natans subsp. sulfidivorans strain D-501 NODE_20_length_69908_cov_86.162594, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 494 28 100.0 32 ............................ AGTACAAGAAGGAGCTCGAGGTCTTCCAGGAT 434 28 100.0 32 ............................ AGCAGCGCCTGCCAGCGAGGCATCGTCTCGGC 374 28 100.0 32 ............................ ATTCGGCGGCCCCGGGGGCGCGCAGCACATGC 314 28 100.0 33 ............................ CAGACGATCAGGATTGACGTGCGGCACGGTTGC 253 28 100.0 32 ............................ TGACGCCGGACGGCAAGAAAGCCCAAGTCAAG 193 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 32 GTGAACTGCCGGGTAGGCAGCTCAGAAA # Left flank : GCGGCGCTGATGGGCACGGCGTGGCTGCGCGGCATGCGCGATCACCTGACGGTCGGCGAAATCGGTGCGGTGCCGACGCAGACGCGGCATTGCTGCGTGTCGCGGCGGCAGTCCCACAGCAGCCCTGAGCGGATGCGCCGCCGCCTGATGCGTCGCCAGCAGATCGACGAGGCCACGGCCCGCGAGCGCATTCCCGACCAGGCCGCCACCTTCCTGAGGCTGCCGAGCCTGCAGGTGCGCAGCAGCAGCACCGGCCAGCATTTCCGGCTGTTCATCCAGCACGGCCCGCTGCAGGACGCCCCGGTGCCCGGCGCCTTCAACGCCTACGGCCTCAGCACCAGCGCCACCGTGCCCTGGTTCTGACGACGACCCTTTTTTGGGGCGGCAGCCTCCGCTCCTTAAAAATCAAGCACTTAGCGCAGGCCCCCGAAAGAGGGTCTCGCGCCAGACTCTGGCAGAATGTTCAAGCGCGACAAGCACTTGGGCGTCTGCCAGCTCTA # Right flank : AGGCGCCAGTAGCAGCGGGGCTTGTCCCAGGTCGTGAACGGCTCTGTTGCACAAAGCGAGCGTCCGAGCGCTCGTAGACTGACGCGGTGAGCGAAGCCAAGAAGAAGCGGACGAAGTACCGCACGACGAACTGGAAGGCCTACAACGCGGCGCTGAAGGCGCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGGGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 130-3900 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPY010000021.1 Sphaerotilus natans subsp. sulfidivorans strain D-501 NODE_21_length_69412_cov_78.774497, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================== ================== 130 28 100.0 32 ............................ CCGACGATGATGCGGACGCGGCGGCGAATCAT 190 28 100.0 32 ............................ AGGGATAGCGGCAGCGAGTGCCCCGACGATGA 250 28 100.0 32 ............................ AGAGTGCGCCGATCACGCGCAGCGCGTCGCAC 310 28 100.0 32 ............................ ACGCACGGAAGCCCCCCTTCGGGGTGTGTCTG 370 28 100.0 32 ............................ TGCGCCAGCGCAGTGAGTTGCGGCAGCAGTGT 430 28 100.0 32 ............................ TGACCGCGGCTCGGACCATGCTCACCGGGCGA 490 28 100.0 32 ............................ CCATGCGCTCGACGATGGTCAGATCGCCGTCG 550 28 100.0 32 ............................ CGAGACGCTGGGCACGCTGTCCCGGCCCTGGG 610 28 96.4 32 .....................C...... ACCGCCAGGCCCGCAGTCCAGACCATCACGAC 670 28 100.0 33 ............................ TCGTCGAGCGGCACCTGGGCGTCATCAGTGGCG 731 28 100.0 32 ............................ TATGAGCTACAGACGGGCGAGGTGGTGACGCA 791 28 100.0 32 ............................ GTGCGCGCAGCCGGCCCGCAGACCCCAGAGAT 851 28 100.0 32 ............................ ATCGAGCACGGCGCCGAGGGCCTCGGGCACTG 911 28 100.0 32 ............................ GGGAACATCTTGCGGATCGCGTCGAGCTGATC 971 28 100.0 32 ............................ TTGTATTCCCAGGCTTTGACCGCTGCGTCCGC 1031 28 100.0 32 ............................ TCTTGGTGGAGGTTTGCGGTACTGAAGGCACT 1091 28 100.0 32 ............................ AGATCGTGCGGCTGATGGCCGAGAAGCGGTAT 1151 28 100.0 32 ............................ AGCTCGATCAGCGCGGCGATCTCGCGCGCACC 1211 28 100.0 32 ............................ TCCCATTCGCCGTTCCGCTGCTTGCAGCAGAT 1271 28 100.0 32 ............................ TGCTGCTGGACCGCGATGTGCTGTCCATGTGC 1331 28 100.0 32 ............................ GCAGGTCTGGCCGCACATCGCCGGGATCGCTG 1391 28 100.0 32 ............................ AGGGGGACCATTCCGTTTTCTTCGATATTGTG 1451 28 100.0 32 ............................ CGGTGCATCGCAGTGCAGGTGGCTGGGCTGCT 1511 28 100.0 32 ............................ TGCACCTCCTCGGCGACGGCCAGACCCTTGAG 1571 28 100.0 32 ............................ TCGCGTCCTGGATCGTGAGCTGATCGCCGATC 1631 28 100.0 32 ............................ ACAACCACCCCCAATCCGGTGGAGTCACGTCA 1691 28 100.0 32 ............................ GCCCGAAGGGCTGCGGCCCGTAGGGCTGCCGG 1751 28 100.0 32 ............................ TGGTCTGTCGAGAGTCCGGCGCGGCGGGCGGC 1811 28 100.0 32 ............................ AAGCGCGCCTAGGGTCTGCAGCCCGAACCGCC 1871 28 100.0 32 ............................ TTCCAGGACTCAAGGGGTGGGTCCTCACCCGT 1931 28 100.0 32 ............................ TGCTCCACCCATGCCCCAGGCGGCGGGTTGGC 1991 28 100.0 32 ............................ ACAGCCGCTCTGCTGGCGCAGTGTGCATGTCC 2051 28 100.0 42 ............................ GCCTGCAAGCCGCAGCGAGGGGACGCGGGCTCGTGAACTGCC 2121 28 78.6 32 .G.TCT..A.A................. AGATCACCGAGGTACTGCAGCCCGAGGTCGCC 2181 28 100.0 32 ............................ AGGACGGGGGCGGCAATGCGGGTTGACGAGGG 2241 28 100.0 32 ............................ ACCGACCCTGCGATGCGGTACGCCCCACCCCA 2301 28 96.4 32 ..............G............. ATGTCGATCGTCGTCTGGTGGTGCGCATTGCG 2361 28 100.0 32 ............................ ATGTCGTCGGTCGGCGCCGGAGTGCACGACAC 2421 28 100.0 32 ............................ TGATCCGGGCGGCCGACATGCTCGATCTGCTG 2481 28 100.0 32 ............................ TGCTGCATGACGCCGATAACGCCACCTCGGTC 2541 28 100.0 32 ............................ GCCGGGGCGCACAGTTATTCAAACGAGTCCAA 2601 28 100.0 32 ............................ GCTTGTGTGCACATGGCCCGGCCCTCATTGGT 2661 28 100.0 32 ............................ TCACCGGGGACGACCTCAATCGCGTACTCGGA 2721 28 100.0 32 ............................ TCCTGCTGTTGATCGGCCTGGCCGGCGGGATC 2781 28 100.0 32 ............................ TCACAGCGATCCAATGCCAGCGCCGCAAACCT 2841 28 100.0 32 ............................ AGCCCGGGCGCGGCCCTCCTGCAGCTGGAGGT 2901 28 100.0 32 ............................ GATCAAGATGAAGCGCGCGACGCTATCTATGA 2961 28 100.0 32 ............................ GCATTGTGCCCGGATCGGTCCTGATCGTCGAA 3021 28 100.0 32 ............................ GACCGGCACCCGCACCGTGCGCCCCTCGTCGT 3081 28 100.0 32 ............................ ATCAGATCGCGATGTCCTGAGTGCGGATGCCG 3141 28 100.0 32 ............................ AGACGGACCCAATCCGGTCGGCCGAGGTGGCT 3201 28 100.0 33 ............................ CGTGATCTTCGGGACCGTGTGGATCACTGGCCC 3262 28 100.0 32 ............................ GCAGTGGCCGAGCGCGAGGCGGACGACGTGGC 3322 28 100.0 32 ............................ GAGCCGGGGACGCCGGCCACATCGTCGCAGAT 3382 28 100.0 32 ............................ AGGCCGAGATCAGCGCGGATCTGCACCGCCTG 3442 28 100.0 32 ............................ TGGAGGTGACGCCAGCCCCGGGCGCGGCCCTT 3502 28 100.0 32 ............................ ATGGACGCCGCCAGCATCCCCAGCCGCAACGG 3562 28 96.4 32 ....................T....... CCCTCACCCGTGCATCATATTTGCCACGCGGG 3622 28 100.0 32 ............................ AGGCAGACACCCACGGGAGACAGCACCATGAC 3682 28 100.0 32 ............................ AGCAGCTCGTGGCTCTGGCCGATGACCACATG 3742 28 100.0 43 ............................ TCGATGTCCGGAATGATCCGGTCCAGCAGCTTGTGAACTGCCT 3813 28 100.0 32 ............................ GTGAGATTGGTGGGCGTGGATTGAAACTACGT 3873 28 85.7 0 .........T.....A......TG.... | ========== ====== ====== ====== ============================ =========================================== ================== 63 28 99.3 32 GTGAACTGCCGGGTAGGCAGCTCAGAAA # Left flank : CGCGTGGCCGTGCTCAACCGCTTCAGTCAGATCGGCCGGCCGCAGACCGTGCCGGTGGGTGCCGTGGCATGAGTCCGTCCGGGGTTGGGGTCAGGGCGTCTGCTCGTGGATTTGTGCAACAGAGCCGTCG # Right flank : AATAAAGCGGGGTGGCAGGGATTGAAATTTGGATGTCTGCGTGGGCTCTCGCCTGCGCGAGGGTGACGGCGCTGTCAGCGTGACTGCGTCGCCACCTCACGTCACATCACCTCACCAGCGGCCTGACCGTGCTGAACCCCCCATCCACCGCGATCACCTGGCCGGTCAGCCGCGAGGCCTGGTCGCTCAGCAGCCAGGCGGCGGTGGCGGCCACGGTGTCGGCGCCCTGCACGCCGCCGAGCGGGTACTGGCGCGCGGCGGCCTCGCGCATCGCCTCGACCTTGAGCATCGGGGCGGTCATCGGCGTCTCGGTCATGCCGGGCGCGACCACGTTGATGCGCAGGCCGGCCGGCGCGTAGGTGGCCGCCGCGCTGCGCGCCAGGGCCTCGACGCCGCCCTTGGCCGCGGCGATCGCCTCATGGTTGGCCACGCCGATGCGCGCCACCACCGAACTGCACAGCACCGCCGCGCCGGGCTGGCCGGCCGCGCGCAGCGCCTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGGGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7654-7830 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCPY010000057.1 Sphaerotilus natans subsp. sulfidivorans strain D-501 NODE_57_length_13458_cov_65.768509, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 7654 37 100.0 32 ..................................... AGGTCGGCGTGTCCTACCGCGGAGACCCAGTT 7723 37 100.0 34 ..................................... CCGCAACTGCGCGGCAGTAGCAACAAAACCCTCC 7794 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 100.0 34 GTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGAC # Left flank : GTGGACATGATGGCGGGGCGGTGGGTCAGCCGATGTAGAAGAATTCGGGATCGGCCGGGGCCTCGCCCGTGCCGAGCACCAGGGTGCGCTGGCGCGGGTCGAGCCGCAGCAGGAAGAAGCGGTCGGTGGCCTCGTCGATGAGCCAGACGATCTGCTCGAGCACGCGGCGCTTCTCGGCCTCGGTCAGCCAGATCTCGTGCACCGACTTCTGCCCGCCGGTGGCGAAGCCCCGCAGCAGCTTGAGCGCACCGGCGCGGCAGCGGTTGTCGCGGATGTCGTAGGCGGCCAGGTAGAGGTGTCGCAGCGGGGTGCTCATCGGGAACAGGCTCCGGTGTTCGCAGGCCTTCATGGTCGCCGCGAACCGGTCTGCCGACTTCCGGCGGCAAGGTTGCCGCGCCCGAAGTGAACACGCCCGCCCTGCCGCTACAATGCGCCCTGCCGGTTCAGACCAGCCTGTGGACGAGCCCCATGCCAAGAGTCAGCTTTTCGCTCCGTCGTTT # Right flank : CGCTGACGGCTTTCCGGGCGTCAGTGCGCATCGCTTGGCGTCGTCGCCACGCTGCGTCACCAGCTCGTCCCATGCCCGCGTCAAGATGCCTCGCACAGGCGCAGGCACATGCGCACTCCTGCCGAAACTGAAGCTTCACCGAATCGGACCGCAGGGTGAATCGCACCGCAGATGCTATGCTGCGCAACACCCCGATGCTGCTCCCGCCCGATTCATGACCCTGAAGTGCCACCTGGCGCGCCTGATGGCGCGCGACCGTCTGCGCGTGTCGGACGTCGCGCGTGCGACCGGCCTGAACCGCAGCACCATCACCGCGCTGGTCCACGACCGGGCCACGCGGGTGGAGCTGCCCGATGTCGAGGCGCTGTGCCGGGTGCTGCACTGCGGTGTGGGCGATCTGTTCGAGTACAGCGCGGACGACCAGCCGGCCGAGGCCGCTGCCCAGGAGATGCGGTCATGAGTCTCGGCGCGAACCGCTGGCATGTCATCGCGCAGTCCGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGACCGGCTTCCCTGATGTTGAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //