Array 1 12465-10315 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMA01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF11077 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 12464 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 12403 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 12342 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 12281 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 12220 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 12158 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 12097 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 12036 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 11975 29 96.6 33 ........................C.... CCAGTGGGCGTAGCCAGCTCATCGCGATTTTGC 11913 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 11851 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 11790 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 11729 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 11668 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 11607 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 11546 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 11485 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 11424 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 11363 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 11302 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 11241 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 11180 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 11119 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 11058 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 10996 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 10893 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 10832 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 10771 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 10710 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 10649 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 10588 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 10527 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 10466 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 10405 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 10344 29 96.6 0 A............................ | A [10317] ========== ====== ====== ====== ============================= ========================================================================== ================== 35 29 99.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 30333-28596 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMA01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF11077 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30332 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 30271 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 30210 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 30149 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 30088 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 30027 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 29966 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 29905 29 96.6 32 .................A........... AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 29844 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 29783 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 29722 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 29661 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 29600 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 29539 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 29478 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 29417 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 29356 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 29295 29 89.7 32 ...G.............A........T.. AAACGGAAGAGGCTATGCGGTTGTTTAGCGGT 29234 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 29173 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 29111 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 29050 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 28989 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 28928 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 28867 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 28806 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 28745 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 28684 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 28623 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //