Array 1 83374-80895 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLZP01000010.1 Acetobacter aceti NBRC 14818 strain DSM 3508 Ga0244652_110, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 83373 36 100.0 30 .................................... TGTCCGCCAGATCACGCCCGACCTCACACG 83307 36 100.0 30 .................................... GGCCGTCGCCGGGCGTGTATGGCGTCACGC 83241 36 100.0 30 .................................... ATGCATGTGATGCTGCTGGTTTGAATTATA 83175 36 100.0 30 .................................... GAATCTGGCCTGCGCCGGATGGCATGCCGG 83109 36 100.0 30 .................................... GCGTCCTATGTGGCGCCAGCTCATGCCCAG 83043 36 100.0 30 .................................... ACTCCTCGCCCAGCATAGAACCTTCATCAA 82977 36 100.0 30 .................................... GCGGCGGTCACGTCATCCGACACATCTCCC 82911 36 100.0 30 .................................... GTAACGCTGGCGCGTCACCTCGGCCAGATA 82845 36 100.0 30 .................................... AACGAATAGATGGACGGTGCGAGACCTTCG 82779 36 100.0 30 .................................... TCGTTCCTTTCGCAGTATTCACTCCCGTCA 82713 36 100.0 30 .................................... CCAGCCCGACGCATGCCGGGACGGCGGCAG 82647 36 100.0 30 .................................... GCGGACGGTGTGATCGGTCCTGTGACGCTG 82581 36 100.0 30 .................................... AAGAGCTTTCCTGAGGATGCTTTCCTGAAA 82515 36 100.0 30 .................................... GCGCCAGCCGGAATCGGAGCTGCTCCATGC 82449 36 100.0 30 .................................... GTAATCTTCCGCTGTAATTACAACAGAAGC 82383 36 100.0 30 .................................... GAGTGTCAGGTAGTATCGCCTACCGCTATC 82317 36 100.0 30 .................................... CAAGGGTATAGCTGATGCATTGGGTGCTTT 82251 36 100.0 30 .................................... TCCGTCAGTTCACGGGTGCGAGCGTTGACT 82185 36 100.0 30 .................................... ACGGTGTCAGCAGCCAGAACGCTCTGACGC 82119 36 100.0 30 .................................... AAGATCTGACAGGCTGCCGCTCATGGCCGG 82053 36 100.0 30 .................................... GCAGGCGACCCGATGCCGCCTGCGTCATGC 81987 36 100.0 30 .................................... CCGAGATCGAGCATATGCGGGGGGTGTGGG 81921 36 100.0 30 .................................... CGTCATCGCCAAGACCAGACAGTTTAATGC 81855 36 100.0 30 .................................... GCAGCCTCCGCAGAGGGGATGAAATCTATT 81789 36 100.0 30 .................................... GCCCACACCACTGCCCACCGGCTCCACGCT 81723 36 100.0 30 .................................... CGTGCGTCTCATCCGTCCTCAATGTCGATC 81657 36 100.0 30 .................................... CTCTGCTGATGGTGCCGCCTTCTTGGTTTA 81591 36 100.0 30 .................................... CCACGCAAATCTTCACCATTCCACTGAAAG 81525 36 100.0 30 .................................... TCACCCGCTGCTGAAACGTAGTAACGTGTG 81459 36 100.0 30 .................................... AGAACCGGCATTGTCCAGCGCTTGTCCGCA 81393 36 100.0 31 .................................... TTTTTCTCGTGTCGAAGGGCCGCATAAAGGA 81326 36 100.0 30 .................................... GAAAAAAGATTTTTTCTGGTCGCCAGTCTT 81260 36 100.0 30 .................................... GAACCAGAGGACGTGGCGGCCAGATAACTG 81194 36 100.0 30 .................................... ATACGACGTGATGCCCCGCACGGTTTTGAA 81128 36 100.0 30 .................................... AACGCCTACATCAAACAGACAGTAGCGGAG 81062 36 100.0 30 .................................... AACTCCTCCATGGTGGAGTGCGGTGAGCCT 80996 36 100.0 30 .................................... CTGCGGCGTTCGCGGCGGATCACGCCCATT 80930 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 38 36 100.0 30 GCCGTGGTTTCCCTACCGATTTGCCAGTGGTAGGCT # Left flank : GTGCAGTCGCCACGGGCAGAGGCCCATTCGATAAGGCGATGCGCATTCATTGTATTCGGAACATGCTGAATGCGATCGAAGTAGATGGCACACTCAAATTCCTGCGCTTGCACTTCGACCAGTTGCAGCAATCGATCCGCTCGTTCCCTGCTGCCATGCCGGGATTCAAGGTAGGCGTTAAACGCCATTCCTTCGTTCTGTGAGGCCGGATTGAGCAGAAAAGGACGCCATGTGTAGTGTGTTTCGATATCAAGACGCTGTTTGAAGACACTGATCAACCGGCGAATGCCCATGCAGCACCACGGACAGACGAAATCGAAAACGATTTCGACGCTCATCCTTGGTCGTGAAGGGGCGAGCATGTTCATGACCGTATACTAGGGACATGATCATGGACATGCACCTTGTTTCGTAGGGTTGGTTACATTTTTGTGTAAAAATGAAGTATAAAATAGATTGAAAAAGCAAGAGTGTTTTTTTGTCTAATTGTTAAGGGAGAA # Right flank : ACCTTCTTGGTAACCGGTTGGTGCTGCATGATTTTTTGTCAGTCTTGTGGTCTGAAATCATAGCAGCACCAACTGTTTTGTGCCGGTCTGTTCTGTTTTTTGTGCGAGTCCGAGCATGATCTCCATTCGTCCATATTGTTTGTCGGTGACCTGAAGCGCTCGAATGCTCCCCTCTTTGGGCAAAGCGGCGCGAACGCGACGAAGATGTTTATCGATACTATCCTGTCCACGTCCTACACGGGCATAGACCGAGTATTGCAGCATCATAAAACCATCATCGCGGAGAAAATTACGAAAGCGGGTAGCCTGCCGTCGCTGGGGTTTTGTTTTCACTGGCAGATCAAAAAAAATCATCAGCCACAAGAATCTGGCCTCCTCTGCTTTCATGCTGTCCTCGCGTCTGATGTTATTCCGATACCGATATTATGTTCGTGGCTTCAGAGAGGGCTGGTGGTCGTAACAGGGCTGCGCTGCTGTGTGTCAGGGACTTCACGGTGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTGGTTTCCCTACCGATTTGCCAGTGGTAGGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCGTGGCTTCCCTACCGATTTCCCCGTGGTAGGCT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.00,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 29277-29732 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLZP01000001.1 Acetobacter aceti NBRC 14818 strain DSM 3508 Ga0244652_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29277 29 89.7 32 ...........G..G.............C GTAGTCAGATGGCCCCGGATGATTTTCAAGAC 29338 29 93.1 32 ...........G..G.............. GTCAGCCGGGATGGGCTGGCCGCCTGCCGTTA 29399 29 93.1 32 ...........G..G.............. CGGTATTGATGGACACACCTTCACCCGTTACA 29460 29 100.0 32 ............................. GTCACGACTGAATCCCGGCCAATGGACGTGGT 29521 29 100.0 32 ............................. GAGGCACGACCGTCTTTTGTCAGTTTCAGCGA 29582 29 100.0 32 ............................. TCGAAGCGATAAAAAATCCGGATGGTGCGCCA 29643 29 100.0 32 ............................. GGATATTTCCCGTCAGGATCAGTGACGAGCGC 29704 29 72.4 0 ...........T.G.........ATGGTC | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.5 32 GTGTTCCCCGCCTACGCGGGGATGAACCG # Left flank : GACAGGCGCTACGGTCGCTGCTCTGACCATCTATGACATGTGCAAGGCGTTAAGCCATGACATGGTGATTCACAGCGTCGGGCTGCTGGGCAAGGTCGGTGGAAAGCGGGATTTTGGCACTTTGCTGGCGCCGGCTGACGGCCAGAAGACCGCAGGACAACAGTAAAACAGGATTGGACCCGCTCCCTGAGATGCAGAACTGATTGTGATGTCAGCGAAATTCTGAAAACGGTTTTCGGCTACATCCAACGTCCTGCCGATTTCATATGAAAGTTCCGGCGTTGTCACCCGGAAGCCGTGCTGTCGCTGAGATGACTGTAGGTAGGGCGGGGGAGTGCCTGGTCTTCTGATGGAGGATGAAATTCACCAGATGATGATTGCTTTGTGCAGTCCTGAATCCGTATAAATTGTCTCTGAAAAACCGGTCTGAAACGCTGTTTTAAATCGGTAGGATCTTTGACATCAAAAAAGTTGTTTTAAATCAGTGGTTTCCACGAAGA # Right flank : CCATTTACGTTAAGGGCGGAAATGTCGCTCCACTGCATTGCTACGTGCGTGAGGAGCAGCATAAAACAGGGTTCAACGCGGGAAAAATCCGAACACGTCAGAATGACTTCTGTTTCGTTGCTGCAATACTATCGATGTAGGATAAAAATGGTGCCCAAGACCGGGATCGAACCAGTGACACTGCGATTTTCAGTCGCATGCTCTACCAACTGAGCTACTTGGGCACCTGGCCAGCGGTTTGACCGGCTGGTGTGGGGGAGCATTTAACCCGCCTTGCCATGAAGATCAAGCCGGGAGGTCGTCTTCTGTGTCAGAAATTTTTCCATCCTCGGAAACGGGTTCTGCCGGAACGCGATAATCCTCGGAAAACCACCGGCCGAGATCAATGTCAGCGCAGCGACGGGAACAGAATGGACGAAACTCCGGCGTCGAAGGTTTCTTGCAGATCGGGCAGGGGCGGGACTCAGCCACGGACAATACTCCATGAAAGAGAGGGAAGA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCTACGCGGGGATGAACCG # Alternate repeat : GTGTTCCCCGCGTAGGCGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //