Array 1 164096-162198 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTS01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain inss35 scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 164095 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 164034 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 163973 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 163912 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 163850 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 163789 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 163728 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 163667 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 163606 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 163545 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 163484 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 163423 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 163362 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 163301 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 163240 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 163179 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 163118 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 163057 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 162996 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 162935 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 162877 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 162816 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 162755 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 162694 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 162633 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 162572 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 162511 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 162450 29 100.0 11 ............................. CGGCCAGCCAT Deletion [162411] 162410 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 162349 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 162288 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162227 29 93.1 0 A...........T................ | A [162200] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181994-180378 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTS01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain inss35 scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181993 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 181931 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 181870 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 181809 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 181748 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 181687 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 181626 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 181565 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 181504 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 181443 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 181382 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 181321 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 181260 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 181199 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 181138 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 181077 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 181016 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 180955 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 180893 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 180832 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 180771 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 180710 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 180649 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 180588 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 180527 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 180466 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 180405 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //