Array 1 110407-108240 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZEU01000001.1 Salmonella enterica subsp. enterica serovar Uganda strain 97-0352 NODE_1_length_567730_cov_3.38532, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 110406 29 100.0 32 ............................. TGAACTATATCAATATAAAACTCACTAAAATA 110345 29 100.0 32 ............................. CCACACGTTGAGCGTAAACCTCTGCCGTTTCC 110284 29 100.0 32 ............................. ACTCCGCCACCCGCGTGGCGGGTAATAAAAAA 110223 29 100.0 32 ............................. TCAAACATCAGCGATTCATCGACAGCGTATGA 110162 29 100.0 32 ............................. TATTCACTAAGCATTTCATTTTTTATAATGAT 110101 29 100.0 32 ............................. CGACCCCCCATTTTTCCGAATCGTAAACGAAC 110040 29 100.0 32 ............................. GGAGGTGATAACCGCCTCGCTGAACGCTACGC 109979 29 100.0 33 ............................. AACATCCAACGGATTCGCTTTACTCAACCATGC 109917 29 100.0 32 ............................. TCGTTTCGTGTTGCTTCATCTGGCAGGTCCAA 109856 29 100.0 32 ............................. TCAGTTACCGATGTTAAAGCAAAATCCGCTAA 109795 29 100.0 32 ............................. CGTAAGAGCCAGGCGATGCCAGGCACTAACTC 109734 29 100.0 32 ............................. GCATGACAGGGCGTATTCATCCCACGTGCGTT 109673 29 100.0 32 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCG 109612 29 100.0 32 ............................. ACAAAAGAAATTGTGACACCTAACACGGCCGA 109551 29 96.6 32 ............................T GTAGTTATACTAATAATGTAGTTGAGTAAGAG 109490 29 100.0 32 ............................. GAACTGATGGGCGCCATTACCGGCGAATTAGC 109429 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 109368 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 109306 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 109245 29 100.0 32 ............................. CTCTACGCTCGTTGCCCACGGAAAAGTCTCGT 109184 29 100.0 32 ............................. TAACCGGCACCTTTACCCTTGCGGAGGCTGAG 109123 29 100.0 32 ............................. ACGATTTCGAACGCGTCAGCGGTCCTGACTAC 109062 29 100.0 32 ............................. CATGGCTGAGGGGATGGCGCTTAAAGACTGGC 109001 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 108940 29 100.0 32 ............................. TGGCACGCCCCCGGCTTCTCTATCCGCGCTTT 108879 29 100.0 32 ............................. GTCACGTTCTGGAGTGTTCACAGCGTGAATTG 108818 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 108757 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 108696 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 108635 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 108574 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 108513 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 108452 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 108391 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 108330 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 108269 29 93.1 0 .............C.A............. | A [108242] ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CGCCAGTGCTGCGCATTCTTGCTCCGGAGTGGGATGACGCGCCGCGAGAGAACTGGTTATCCAGCGCCATGCGTAACAGCGCCTATGTCTATCCCGATCATGGGCGCATGTGGCTGACGCAGCGCATATTACGTGAGCAGGGGACGATTCGGATGCCGCAATCTGCCCGCTTGTTGATTGAGTCGGTCTACGGTGAGGATGTCAACATGCCGGTTGGATTTGCAAAAACCGAGCAATTGCAGGAAGGCAAATTTTATTGCGACCGGGCATTTGCCGGCCAGATGCTGCTTAACTTTGCGCCGGGCTACTGTGCTGAAATTAGCGATTCTTTACCGGAGAAAATGTCAACGCGGCTGGCGGAAGAGTCTGTCACGCTGTGGCTGGCGAAAATCGTGGATAGCGTCGTAACCCCTTATGCCAGCGGTGAACACGCCTGGGAGATGAGCGTGCTGCGAGTACGTCAGAGCTGGTGGAATAAACATAAAGACGAGTTTGAAAAA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120905-120633 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZEU01000001.1 Salmonella enterica subsp. enterica serovar Uganda strain 97-0352 NODE_1_length_567730_cov_3.38532, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120904 29 100.0 32 ............................. GTGGATATGCTGGCCGAGAAGGTTGGAACAGA 120843 29 100.0 32 ............................. CCATCCTGGCGGAACTGTATGCAGAAACAGGC 120782 29 100.0 32 ............................. GACTACCCGGCATTTGTGGACGCATATCGGCA 120721 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 120660 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //