Array 1 349172-350171 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024309.1 Cutibacterium avidum strain TP-CV14 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 349172 36 100.0 38 .................................... ATATTCACTGGACCTGCGCCTGTCGCTTTAAGCGCCAT 349246 36 100.0 40 .................................... TGGACCTGAGCCTGTTGCCCGCAGCGCCATAAACCGATCA 349322 36 100.0 40 .................................... ACCATATCGGCACACACTCACGCGGACTCAATGTCACCGG 349398 36 100.0 38 .................................... GACGAGCGGCCAGGTGGGCGGTGAAGCGTTTACGATTG 349472 36 100.0 39 .................................... CGCCCTTAATAACACCGCCTACAGCGTTAATTCCGGTGT 349547 36 100.0 37 .................................... TTTGACACAATGAGTTTATGACTAGTAATGTCGTCGG 349620 36 100.0 36 .................................... AACCCCGAGGGCATCGAGACCATCGAGAACTCCAAG 349692 36 100.0 37 .................................... TCAGGACATGTCCTCGTACCCGTGGGTGATGCAGGGA 349765 36 100.0 39 .................................... GGCTACCCGACGTTCCGCACTCGCGCCGAGGCGGTCACG 349840 36 100.0 38 .................................... TTGCCGCCATGACGCCACTCGGCCCAGTGATTCCTCGA 349914 36 100.0 37 .................................... CGGAAAGAAGTGGCGCACCAAGGACGCACTGTGGTCT 349987 36 100.0 39 .................................... TGTTCGTGGGCGGGCTCCTCGGCGACGCGCTTGACTCCC 350062 36 100.0 38 .................................... CTGACACCTGAGGCCACAGAGAAGGCCTTAACCGACCC 350136 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 14 36 100.0 38 GCCTCGGCTTAACTGCCGAGGCAACTTCGTTGAGGC # Left flank : ATCGCGGGGTGACGGTGAGATGAGTCGCCAACCTGACGAGATGGCATATCTCATTGCTTACGACATAGTGGATGATCGCCGTCGCGACATGGTTGCGAAGGTGCTTGGAGGTTATGGCAACCGTGTTCAGTACAGCGTTTTCATTGTGGTGTGTACCAAGGCTGCGCTTCTTCGGCTCCGCCGGAAGCTGACGGGGGTCATTGATTGTGAGGAGGACTCGATACTTGTAGCGCTGTTGGGGCCTGATGGAGGGGCGGACCTCTCAGTGGATTGGATAGGTCGGAGCCGAAGAGTGTTTGACGATGCTCCGGTCATCGTCTGATGCGAGAGGGTCTTGAAACACGGAATCATGTTGACCGCTCGCAGCTGCGAAGCTGGTTCTCAGAGACGGTTTGACCGAGATTTCTCGGTCTGGATCTTGATAACTACGTGTTCCTGGCGCGGGCCCCTCGCGAAGGGTTGATATTCTTCCTAATGAGAGGCGCTTGGATCGCCACGCT # Right flank : CTCTCTCGTCCCTCCCCCCGGTGTGCGCAGCCACAGGGGGCCTCGGCTTAACTGGCTCTTCCCAATCATCGGTGGAAGGCGGGTCTGAAACCGCCGGTGTCGAGTATTGCCCTTCGGATGTAGTTGGTCAGGTTACGGAACCCGAGAGCGGTCCCGCGGAGGTGCTCGAGCCGTCCGTTGATCGCTTCGGTAGGGCCGTTGCTGGTGCCGGGATGATCGAAGAACGCCAGGACGTCGCTGCGGCGCTTGTTGAGCGTCCTGCCAAGTCTTGCCAACTCGGGCAGAGCCTTGGGGACCCCGTGGGCCAGCGACTCGATGATGCGGGCGAGCGAGGCCTTCCCGGCTGTGGCGTCCTTGCTCCGGTAAGCCGAGACCAGCTGCTGATAGACGCTCCATGTCACCTCGACGCCGACGTGATCATCGCAGGCGAACAGGTCCTCGAGTCGCTCGATCTGTCGTGGTCGGAGCAGATCCAAGCCGGTATGGAGTAGCCGCCGGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCGGCTTAACTGCCGAGGCAACTTCGTTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 2372805-2374540 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024309.1 Cutibacterium avidum strain TP-CV14 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2372805 29 96.6 32 ............................T TTAGTATTCTCAGCCGCCAATTCTGCGAGCTG 2372866 29 96.6 32 ............................T GATAATCTGCACTTTCCGGATTGTTGAAACTT 2372927 29 96.6 32 ............................C TATTCGTCATCATCCATCAAGAACGGGTTATC 2372988 29 96.6 32 ............................T ATCTAGGGCAGGCTCGGCGGGAGGCTCAATGA 2373049 29 100.0 32 ............................. CCATGAACGCGGCTGTGGCGAGGGATTGTCCG 2373110 29 100.0 32 ............................. GCCCGCCGTCGCGTCTAACATAAGATCCTCCG 2373171 29 96.6 32 ............................T ACTGCCACCCTCTGTAACTATGTGTCAACAGA 2373232 29 100.0 32 ............................. TGGGCTGATTTCGCCGTCCTCTCCACGTGGGG 2373293 29 100.0 32 ............................. GCGGACAACGGCGGGCGACGCTCGGCTATCTG 2373354 29 100.0 32 ............................. TGCCGTTCTGATGCCGTGGATGAAAATAGACG 2373415 29 100.0 32 ............................. GACTGATGACATGGCTCGGACGACCATTCACG 2373476 29 100.0 32 ............................. TTCACGCCCAACAAGCCGGGCCAGTGGGGGCG 2373537 29 96.6 32 ............................T AGCCCCAGTTCCATGGAACGCTGGGTGGGCAT 2373598 29 100.0 32 ............................. GCCAATCTGTACGAGGCCAACCTGCGTAAGGC 2373659 29 100.0 32 ............................. AAGAAGGGTGGCGGATATTTTTATCCGGTTAA 2373720 29 96.6 32 ............................T GCCGCCCATATGCCTGTCCATGCAGATCCGAG 2373781 29 96.6 32 ............................T TCATCAGCCGCCGTTGTAGTTCTTTCACCGCC 2373842 29 100.0 32 ............................. CGTCCACCGGGGCGGCGCAGCGGATCCTGGGG 2373903 29 96.6 32 ............................T CCCTCACGGAAATTAGCACCATAGGGCACTTT 2373964 29 96.6 32 ............................T TCACGCCGCGATCCCCGAGGCCCTGGTCGAGT 2374025 29 100.0 32 ............................. AATATACATTCTCCCACCCGTTCTCTAGGGTG 2374086 29 96.6 32 ............................T AGGACAACCGGCCCACAGTTATCGACCCCGAG 2374147 29 96.6 31 ............................A ATTCGAACGCCCCGACGGCTTCTCCTCTTCA 2374207 29 96.6 32 ............................T CAAACCCTTGTTGATCGGGATGTCGATAACCC 2374268 29 96.6 32 ............................T TGCCCATCGTGAGCCACTGCTTTGTCCCCAAT 2374329 29 100.0 32 ............................. CTGAACCACACACCTCCCTATTCAAGGAAGGC 2374390 29 100.0 32 ............................. GCCGCCATACCAGCACCAGCAAGCCCACCAAC 2374451 29 96.6 32 ............................T ACCCGTGAAAAGGCTGCGGTAATGCTGGGTCA 2374512 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.2 32 GTCTTCCCCGCCTACGCGGGGGTGAGCCG # Left flank : GACGCCCCCGGAGATCCCGATGACGGATACGGGTGGGATGTTGTCGACCTGTGGGACGACCGCACTGGCACGGTCGCCGGCGGAAGATCGTGGGCATAGCCATGGTCGTGCTCGTCCTCACCGCCTGTCCCGCGGGACTGCGTGGCCACCTCACGAGGTGGTTGCTCGAGATCAGCCCTGGGGTGTTCGTCGGGCATCTGCCTGCACGGATCAGGGATGCCCTGTGGAGCCGAGTCGTTGAAATGTGCCACGACGGGCGGGCGATCCTCGTGTACTCGATGCGCGGCGAGCAGCATTTCGAGTTCCGCGTGCATCGACATGACTGGGACGTCGTCGACTTCGACGGGCTGAAACTCATGCAGAGGCCAAACAATAGGGCACACAACTCGACACTGCGGCCGGGATGGAGCTCGGCTGCGCGGCGACGTAGGACGGCCAAGCGCTAGATCGAGTACACTTGTATCTGGGCAAAGCTCCTGCATCAACCGTAGTCGGCTGGT # Right flank : GGAGGTCAGCATGGCTGACCTTGTTATCCAGGCGTTGCAGTTGGCGACAGCGGTCGTCAACCTCGCAGCCGCCGTGATTGCGGTGCGCAAGCTCCGCAAAGAAAGCCGCCCCCGAGCAGCAACTCGGAGGCGGCGAGGTGGCAAACGCCGGTAAACAACGGGGACCCGGTTCCACAGAGGGGCCGGGTCCCCTCCTTCCACGAAGTATACCTGTCTGCGCGGGCCAGGAGAAGGGGTCGCCGGTACGCCGATGAAGCGCTTAGGTCTCACCACAAGGGCCGTTGATTGAGGTCGTCTTCCCCGCCTACGCGGGGGTGAGCCGGACAGGTCTACGGCATCGGGGGTGGCGTTGGCGTCTTCCCCGCCTACGCGGGGGTGAGCCGATTCGCATCCACGGTGTCCCCGTGAAGAGTCTGGTCTTCCTCGCCTACGCGGGGGTGAGCCTTCGTTTCCGGCGTCGGTAGAGAATGACCAGGCGTCTTCCCCGCCTACGCGGGGGT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCTACGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2374833-2375045 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024309.1 Cutibacterium avidum strain TP-CV14 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2374833 29 100.0 32 ............................. GACAGGTCTACGGCATCGGGGGTGGCGTTGGC 2374894 29 100.0 33 ............................. ATTCGCATCCACGGTGTCCCCGTGAAGAGTCTG 2374956 29 93.1 32 .......T....................T TCGTTTCCGGCGTCGGTAGAGAATGACCAGGC 2375017 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 98.3 33 GTCTTCCCCGCCTACGCGGGGGTGAGCCG # Left flank : TCCCCGCCTACGCGGGGGTGAGCCGCTGAACCACACACCTCCCTATTCAAGGAAGGCGTCTTCCCCGCCTACGCGGGGGTGAGCCGGCCGCCATACCAGCACCAGCAAGCCCACCAACGTCTTCCCCGCCTACGCGGGGGTGAGCCTACCCGTGAAAAGGCTGCGGTAATGCTGGGTCAGTCTTCCCCGCCTACGCGGGGGTGAGCCGGAGGTCAGCATGGCTGACCTTGTTATCCAGGCGTTGCAGTTGGCGACAGCGGTCGTCAACCTCGCAGCCGCCGTGATTGCGGTGCGCAAGCTCCGCAAAGAAAGCCGCCCCCGAGCAGCAACTCGGAGGCGGCGAGGTGGCAAACGCCGGTAAACAACGGGGACCCGGTTCCACAGAGGGGCCGGGTCCCCTCCTTCCACGAAGTATACCTGTCTGCGCGGGCCAGGAGAAGGGGTCGCCGGTACGCCGATGAAGCGCTTAGGTCTCACCACAAGGGCCGTTGATTGAGGTC # Right flank : GGCATCACCGCCTCACAGACCCCCAGCGCGGCCGATGGACCGCAGCCGGAAGCGTCATCATCGACTGGCAAAACCGATCACTGGTCCCCATCGACGGAAACCTTGATGCCGTCATCGACCACTGGGCATGGACTCACGACCCCCAAGCCCACACATCCACCATGATCGACCTTGGCACCGGAACCACCACCACCAGCCCCGTCACCGCAACCCCGGCACGCCCCCTCGGCCTCGCCCAAAACCACCTGATCGTCATCAGCGACGACGACCAAGGGCACCTGAACCTCTACGGGCTCAAATCTGCATAAGCACTGCGGCGGCGCGCTAACAAAGCCCGCCGCCACAGCACTTCACAGATCATCTCTGAGCATGACTTCTTTCAGCTTGCGCGCTTGCCTCTCCAAAGCCTCTTCTTCGGCCCGGTTCTCCAGCTCACCGTCAATACCAGCTGCAATGAACCACAGCAGCAAGCCACCGCCGACCAGCACACCGGCCAAGAC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCTACGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.80,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //