Array 1 15422-17502 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMAD01000027.1 Streptococcus equi subsp. zooepidemicus strain ISU38408 contig027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 15422 26 100.0 39 .......................... AATTTATCGTATTGAAAGAGATCTATCTTTAAGGTCTCG 15487 26 100.0 40 .......................... TTCTCCATGCCGATAATTACCATCTAATCTAATCGTCTCG 15553 26 100.0 41 .......................... AAAGTTATAGTGCCAAGCATGCAGGACTAAGTAGCGTCTCG 15620 26 100.0 40 .......................... ATTCCCGGCGGCTTTAGATAGGTGAATAGGGGGCGTCTCG 15686 26 100.0 40 .......................... CTTTCTCAATACCAACAGCAACCCCCATCGGCAAGTCTCG 15752 26 100.0 40 .......................... TTTCTCGACGGCTAATTTTGTTGATGATGTCAAAGTCTCG 15818 26 100.0 40 .......................... CATAACGACATCTGACACGCCTTTAATTGACTTGGTCTCG 15884 26 100.0 41 .......................... TTCGATTCCTAATCTTCTGCGTTGCCTTTCTCTTTGTCTCG 15951 26 100.0 40 .......................... CCTTTAAGGTCAAGCTGAGGCTTCTCAGGTCTCTGTCTCG 16017 26 100.0 40 .......................... CATCAACTCGCCACGCTGTGGCAATTTCTACCTCGTCTCG 16083 26 100.0 40 .......................... ATAGGCTAAACTATCGAAATATTTACCTAGATTTGTCTCG 16149 26 100.0 40 .......................... TAAAATTACAAAAGTAGAATCTTTTACGATTTCGGTCTCG 16215 26 100.0 39 .......................... TGCTTGTTTTTCTGCTTCACTCTTTTGTGATTCGTCTCG 16280 26 100.0 42 .......................... TTCTACGAAGCTATCTAGCAACTGCTGGCCACCCTTGTCTCG 16348 26 100.0 40 .......................... TGCGATGCTAGGTTTTTTCTGCATAGTAACGTACGTCTCG 16414 26 100.0 40 .......................... ATCAATGAAAAGAAAGTAAATCCCAAAAAACACAGTCTCG 16480 26 100.0 40 .......................... ATCCCTAGCCCTAACCATAACCCCGTCACCTTCGGTCTCG 16546 26 100.0 40 .......................... CCATGGATGACCATGGCTACATCATGCCTGTGGTGTCTCG 16612 26 100.0 41 .......................... ATCAAGTCTAACCGAGCATCTGTCAAGCGAGCATCGTCTCG 16679 26 100.0 41 .......................... TCAATTAATTGTTGTAACTTTGACAATCTCTCATCGTCTCG 16746 26 100.0 40 .......................... TTTTTGAATGGTTGCTGAAACCTGTAAGAATACAGTCTCG 16812 26 96.2 40 ......G................... ATGTCAGACCATTGAGGAGACTTAATGAGCGACCGTCTCG 16878 26 88.5 42 ...TT.G................... CCTTGATAAAGATCTATTAACGCTAATCTAACATTTGTCTCG 16946 26 88.5 41 ...TT.G................... TCTCTGTTATCTGTTCTCGTTCGAATTCGGCAATTGTCTCG 17013 26 88.5 41 ...TT.G................... TATATATTGATGATTTACTACAATTGATATAAACCGTCTCG 17080 26 88.5 40 ...TT.G................... AAGTAGTAACTCATAGTTTTTTTGATTATCAGCCGTCTCG 17146 26 88.5 39 ...TT.G................... TCTTGATCTATATCCTGCACCTCCTGTAATTATGTCTCG 17211 26 88.5 41 ...TT.G................... GACAATAATCACAACGTCCACACGACTTAGCTTCAGTCTCG 17278 26 88.5 39 ...TT.G................... AAATACTATCTGCAAAATGGTGGTCTGTCTTTAGTCTCG 17343 26 88.5 41 ...TT.G................... CAATCGTTGAAGATCATCATGCCACCGTTTTTAGTGTCTCG 17410 26 76.9 40 ..TTTC.T.......C.......... ATCCGATAGGTGATTTTACGGTGCTGACTCTCCAGTCTCG 17476 26 80.8 0 ..TTTC.T.................. | T [17500] ========== ====== ====== ====== ========================== ========================================== ================== 32 26 95.7 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGTTACCCACCTTTTATGATTTAGGAGATTGGTTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCAGCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTATGTGTTGATTATGGCCAGCGTGTGCAGCATTCAGTATTTGAGTGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATATGGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGGGTCACTCATAAAATGCTGTGAGACTCGCGCTAAAATAAGCTAAAAAATAGAGAAATGAGGGGTTATAGCTGAATATGTTAGTAGCTAGCCTGTGTCATTTCTCTATAAACTGTGCTATACTGCGCAGTCTCG # Right flank : TGCGATACGTGACTTTACGATGTTGCGACTCCGTTTTGCCCTTTGTGGGTGCGTGGTCCGTATTCTTTGTTTTTCATGAAGGGATAAATCATATCGTATTCATCAAGCTGATTTATGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTGTTGCAACAGGATTGGTTTTTTCTTGTGATTGCAGATCAGACTTTTCAAAAGAACAAGCACATCATCTCAGCTAGGCTGGTGCTTGATAGCTCCTGAGCCCTTGTTTGCTGTAGCTGATAGGACTTTACTGATGGCCTAGTAAGGCATATCGTATCAAATTCAAGTTTTTTCATGTTACTGTCTATAGTTTGTCTGCCCTACTTTAGGTAGAATAGAGGTAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTGTATTTAG # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //