Array 1 1552558-1553105 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNKL01000001.1 Bifidobacterium adolescentis strain LMG 11579 Contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1552558 36 88.9 35 ...........A...C...T......A......... CTTTGGTTCGGCACTTCGCTTGGCATGTCGCCGGG 1552629 36 100.0 38 .................................... GCCTCACCATACGCGCCATAAAGCCACGGCTCCGCCTG 1552703 36 100.0 37 .................................... CGGTGTACTCGTCCAGCAGCAAGACCCGTTCCTCCTC 1552776 36 100.0 36 .................................... GATCTCGACTCCCAGGTTGAGGGTCATTTTCGCTCC 1552848 36 100.0 38 .................................... GGGGAACAGTGGACCGCGCGCGAAGCCTACATCATCCG 1552922 36 100.0 38 .................................... CCCACACCATGAGCCTCCTATTGCCAGCCGATCCGTTG 1552996 36 100.0 38 .................................... CGAACGTCGTGTGGCAGAAAAAGGACGGCTCGTATCTC 1553070 36 83.3 0 C..........................A.AT..CC. | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 96.5 37 TCCTCAATGAAGTCCTGAGCTTGAATGCTCAGGAAT # Left flank : GACAGTCTCGATGGATGCGCCGGTCTCGAAGACACGGATTCTTTTGATGAATGGATCGATTTCGATAATCGATTGAAAAAGAAATACGGCGAAGGCTATGTGCCGTCGGAAGTATTTTTAGCTATTCGGAAGGCGGATGACAAGCTCGTCGGCATCATTGATTTCAGACGTCCGCTATCCCCTTTTCTGCTGCAATACGGAGGAAATATTGGGTATAGCATTTTGCCATCGGAACGTCAAAAAGGGTATGCCAAAGCGATGCTCGCCTTACTCCTGCCCATCTGCAAAGAGCAGGGCGAACAACGTGTTCTACTTACCTGTCACAAGAGCAATGAAGCATCAAGACGGACGATTATCAGCAATGGTGGAAAGATGGAGAATGAAATCGTGAACGGTACGGGACGGAACGAAGACAGTATCATCCAGCGATTTTGGATAGACCTCTGAATATTGGCTTTAATCCAAAAAACTGGAGACGGTTGCGCTTCTTCGCCCACAGC # Right flank : TGATTTTTGTTCCGCCCTTATAGTGGGGCGGCTTGCGCCGCTTGGTTTGCATAATACTCGGTTTCGGTCCGTTCCGGTGTCCTGTAGCCCAAGGACCGGCGCAGACGCTTCGAGTTCCACCACGAGACCCACCGGAACGTCGCCAATTCCAGGTCCCTCAAATCCCGGAAGGGCTTGCGTCGCCAGACGAGCTCGGTCTTGTACGCGCCGTCGGCGCTCTCGGCCATGGCGTTGTCGTACGAGTCGCCGACCGTGCCGGCCGAGGGAAGCATGCCGAATTCCCCGACCCTGGTGGCGTACACGAGGCCGATGTACTGCGCGCCATGGTCGGAATGGTGCGCGAGACCGTCCGTGCCGCCATGCGGGGCGGCCCATGACATCGCCTGTTCCAGCGCCTGCAGCGGCAGCTCCCTGGTGTCCATGGTGGTGGCGCACGCCCATCCGACGATCCTGCGGGCGAACACGTCGGCGGCGAACGCCGTGTGGCCGAACGAGCCGTT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCTCAATGAAGTCCTGAGCTTGAATGCTCAGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 1560134-1556919 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNKL01000001.1 Bifidobacterium adolescentis strain LMG 11579 Contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1560133 36 100.0 36 .................................... GAATACACCGTCAAAGCCACCACATACCGCAAATTC 1560061 36 100.0 35 .................................... GTGAGCCTGTTACAGCTCTATTTGGACGGCTTTAT 1559990 36 100.0 36 .................................... GCGACTATACGGATGCTGATCTTGCGGAACTTGGGC 1559918 36 100.0 34 .................................... CGTGTACGTCCGGGCTGCTGGAGCTGGAGCAGAA 1559848 36 100.0 35 .................................... GCCATGTTTTTGCTTGGCTGTCCTCTAGCAAGTTG 1559777 36 100.0 36 .................................... TATACCGTACTTAGCATTAAGAGTCAAGTCGGCGTG 1559705 36 100.0 35 .................................... GTGCAGATGTCTACCGTGATGGCTATGGCGGGCGA 1559634 36 100.0 38 .................................... AGACGCGCGCGGTGTTTGCGATGGTGAAGCTGGCGACC 1559560 36 100.0 40 .................................... TATCTAAGCCCCGAACAGGAAAGCGCCGTGGAAATGCGAA 1559484 36 100.0 38 .................................... GGAAAGGAATGAAATGCACACCGTCAGAATCGCCACCA 1559410 36 100.0 34 .................................... GATGGCGAAATATGGCCTTCCGGTACGACTACCG 1559340 36 100.0 36 .................................... AACACGCTCACAGTAGCCGTCTACGAAGCACGTCAT 1559268 36 100.0 38 .................................... GGTTGCAAGGTTTTCGTTTGTCGGGTTCGACTTGTACG 1559194 36 100.0 37 .................................... GCGCAACGACCACCGTCATGGGAGACATTGAACGCCG 1559121 36 100.0 36 .................................... AAAGGCTCGCTCGAAACGTCGCTGGCATACGCGAAC 1559049 36 100.0 35 .................................... TACCGCGGACGCCAGGTCATCCAAAGCATCGGCAT 1558978 36 100.0 36 .................................... ATGCAGCTCATGCACATGCTCAAATACGCGACCAAG 1558906 36 100.0 36 .................................... ACCGTCCATTTGTCTGCGGGCTGGGGGATGTGGTCG 1558834 36 100.0 36 .................................... ACCTTGAACGCATTGGACTTCGCGTCCATGCCCGCG 1558762 36 100.0 37 .................................... ACGGCCACGTGGTGCACGTCGTTCAACAGGATGTCAC 1558689 36 100.0 36 .................................... GCGCGCTTGCCTTCCGGAAGGTCAAGGTCAAGACGG 1558617 36 100.0 40 .................................... TTCCCCCAGCACGACCCGTCGCTCGACTTCGCAGACCCGA 1558541 36 100.0 36 .................................... AGCTCGCCGATCAGCTCACCGGCGGTCATGCCGACG 1558469 36 100.0 38 .................................... GAGGTAGTTGTGTTCTTTTTGTAACGATTACGGCGATG 1558395 36 100.0 35 .................................... GTCTCAAAATCTGGCCGGGGGCGCTCGAATCGCTC 1558324 36 100.0 37 .................................... TACGATGAAAGTTTTTCCACTTGGATTGGCAGACAGC 1558251 36 100.0 37 .................................... AACTCACAGTGAATTATTTAAGCACACAGGAACCGAG 1558178 36 100.0 35 .................................... TACCGCCAGCCTTCACGAGCGAAAGCTGATAGACA 1558107 36 100.0 36 .................................... GAGACCATCAGCGCGCTCAACCGCGACAGGGGCTGG 1558035 36 100.0 35 .................................... ACGCTCACCGAGGAACAGCGCGAGGCCCGGCGCAA 1557964 36 100.0 35 .................................... TCAAGAGAGGGATCCCAGGCGTTCCTGCCGGCGTC 1557893 36 100.0 36 .................................... TGCGCTGCTCACGGTCCACGGTCTCGCAGAAATGCA 1557821 36 100.0 40 .................................... TCGAGGCATGCGGCCCAGTCGTGTTCGCCGGATGGGCGAA 1557745 36 100.0 36 .................................... GACTGCGTGATGTTGCCGAGTGTGAGCGTGGTGTCG 1557673 36 100.0 37 .................................... TTATACCGCGGATACGCCGAGGAGGTCAGCATCATGG 1557600 36 100.0 37 .................................... TTGGAGTCGACGGTGTAGGTGCGGTCGGGCAGGTACA 1557527 36 100.0 34 .................................... GAAAACGGCGCGCGCTCGGCCAACGTATCATTAG 1557457 36 100.0 38 .................................... TTGCGAAAATCATCGATGCGCGTCTGTGGGAATTCCGA 1557383 36 100.0 35 .................................... CCAACCATGATGTGCAGCGTGATGTGCGTGACGCC 1557312 36 100.0 34 .................................... ACGCCTTTACGGTCTGGTTCGCCGCAACCGTGCT 1557242 36 100.0 39 .................................... GATGGCGGGGCAGACGAGGGCGACGATCGCGGATGCGAG 1557167 36 100.0 35 .................................... TGGCAGGTTGCCGGCATGGAGACCGCGCTGAACTG 1557096 36 97.2 35 .................T.................. TCCACGGAGGACGGCACCGTACTGCATCCGGAGCC 1557025 36 100.0 35 .................................... GGTACGGAATGCACTCTTGCCGGTGACATGAAAGC 1556954 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 45 36 99.9 36 ATTCCTAAGCTTTTACGCTTAGGACTTCATTGAGGT # Left flank : CTATTTAGTCGCATACGATGTGAGCGACGATTATCGTCGTTCACATATCGCGAAGATTCTTCAGCATTATGGGGAGCGTCTGCAATATAGCGTGTTTCTATTGCGCGTCAGACCTTCGATGATGCTTGATGTTCGCATGCAAGTTGAACAGGAAATTGATGGTTCAACTGATTCCGTTGTGTTCTGTTCTTTGGGGACGATTGCACAGACGGAAGAGGGATTGGATTTCTTGGGACATCGTGGGTATACGGATTTAGACATACCAACGGTGATTTGATTCTTAGCTCAACATAGCTATGTCGCTTGATAAGTGAAGAGTGTTTGTTTTTAGGTGCGAGTGCTGAATCGTTTCTGTGACACGCGGTGAGCGCTCGCACCTAAGAACAATAGGCCTTATGTGTGAGGGCATTCTGGGGATGTATCTCTAATCTGGACAAGGGGAAGGACCTCTCGCAAAAAGCTTTGAGATACGTGTCATTGCAGTGTTTTATAGTGTGACT # Right flank : TTTCTGATATGAACTGATTTTTGTTCCGCATTTCCCCTAACTCGATGGGAGATGATGGAACCATGGCAAAAGGAACGAGATACACGCCGGAGTTCAAGGCGAAGGCCGTCAGGCTGTTGACCGAGTCGCGCGGCTCGTATTCGTCGGAGACCAAGGCGATCGAACAGGTCGCCAAGGATCTGGGGGTCGCGCCGGAGACCAAGCAGTCGGCCGAAGACGCGATGGCGGAGTTGAGGAGTCTGCGGGCCGAGGTCGCGCGATTGAGGCGGGCGAACGAGATATTGACGACGGCGTCGGCTTTTTTCGCGGCGCGGCTCGACCCGACACGGCGTTGACGGTCGCTTACATCGACGAATTCAAGGACCGTTTCAGGGTCGGGCCGATCCGCAGGGTGCTGGCCGCTTCGCTGGACTGCGGGTTCATCACGCCGCGCGGCTACCGCATGTTCAGATCCAGGTGTTTATGGTCAAATAAACGTGTACGGCGTCACCACCAAATCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCTAAGCTTTTACGCTTAGGACTTCATTGAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //