Array 1 127245-123637 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072051.1 Akkermansia muciniphila strain Akk0196 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 127244 31 100.0 34 ............................... TCTTTCCTGCTACCCGCGCCTCCTTTGAGCGTAA 127179 31 100.0 34 ............................... TTGGCATAGGACATCATCTCCGCAAACAAGGCAT 127114 31 100.0 33 ............................... CTTTGATTTTGCGGTAAATCCAGGCAGGGAGCG 127050 31 100.0 33 ............................... AATCCGCATCCGGATCAGGTAGGCCATCCGGAT 126986 31 100.0 33 ............................... AGCCAGGAGCCTCCGGCCCGCACCAGAGGGCGC 126922 31 100.0 34 ............................... ATTGACGCCAACCGAGAATATGTCGGGTTGACGA 126857 31 100.0 34 ............................... TCCAGAGTCTTCTTGCATTGCTCAGCCGCCAGCT 126792 31 100.0 34 ............................... ATCGTACCCGGCATCTGCATCTGCTGTGCAGGCT 126727 31 100.0 34 ............................... CGTATTTGGAAATCATGTCAATCATGCGTTGCTG 126662 31 100.0 34 ............................... AAGAGAATCTGCATCATTTTTTATAGAAGATATA 126597 31 100.0 34 ............................... GTCAGGCGAGAATTTGAGAAAATCGACTAATAAT 126532 31 100.0 34 ............................... ATCTTACTGACTGAGAGAATGCCAGCACGATATT 126467 31 100.0 33 ............................... TCCCCGAAGCCGAAATTGATAAAAAACCTGATA 126403 31 100.0 34 ............................... CAAGGAGCTGGAGGACATCGCTACGCTGGCCTGC 126338 31 100.0 34 ............................... AAAACAAAATAGAAGCTCGGCTGGAAACGCTGGG 126273 31 100.0 34 ............................... ATGCCTGCCATGATACTTGCGCCGGAAAAGCCGT 126208 31 100.0 34 ............................... CGTCATTAAAAACCCGAAATACGCTCCTACGGAT 126143 31 100.0 34 ............................... TAAGACTGCGCACAACTATATGTTGCGGCTATTT 126078 31 100.0 34 ............................... TCGGCTCCCGCCGGGGCTTCACGGTAGAATCCGA 126013 31 100.0 34 ............................... CGGGATGCAGGTGCTTACCAAGTCGGCGGAAGAT 125948 31 100.0 33 ............................... GATATGTTTTCACAATCAGCATCACCGTCCGTA 125884 31 100.0 34 ............................... CGGGTGGGGGCTGGAAAGCACCGTTCAGAATATG 125819 31 100.0 35 ............................... AGGTTCTTCCTCGCCAAAGGCGGCGAGGCTAAAAT 125753 31 100.0 33 ............................... CCTTGATTTTTTACTGGATTCTTTAAGCGACGA 125689 31 100.0 34 ............................... TTATTTGCCTGTCGGAGTGCTCCGTCGTCTGGCT 125624 31 100.0 34 ............................... ATCGCTCTACTACAAAATCCGCGTCAAATACGAG 125559 31 100.0 34 ............................... GGACTGGCAGCTGGTCGTGGAAAACCAGAACGGC 125494 31 100.0 34 ............................... TGGTGTGCGAAGGTTCTGACGTTGCTCCAAAAGA 125429 31 100.0 35 ............................... AACTCTCCGGGCCGTACCCAATAGCGTTGGGGGAT 125363 31 100.0 34 ............................... CACAAGGAAGAAGACGGATCATCTTGTTGATGTC 125298 31 100.0 34 ............................... ACCAGGGGGCGCGCTGCGCCCCCGCATCCTCTTT 125233 31 100.0 34 ............................... ACTGGATCGGCACGCAGGGTTATCTGGGCGGCCC 125168 31 100.0 34 ............................... TCGGCATTGACCCGTCCCTGACTGCTACAGGACT 125103 31 100.0 35 ............................... CTTGAATACGTTAATATAATTCAATAAACGTTCCT 125037 31 100.0 34 ............................... TTTCTCTTGCAATTCTTAAAATATAATGATAAAT 124972 31 100.0 33 ............................... CTGAAAATCAGAACTATGTCCCGAATGATCCTA 124908 31 100.0 34 ............................... CATAAAATAGAGAATCTTTCTTTGGATGACGCCC 124843 31 100.0 35 ............................... TGCAAAGCTTTTTTCATTTTTCTCTTGTGTTACTC 124777 31 100.0 35 ............................... ATGAATCTTGGAGCATTGGACGTATGGAACCTGAC 124711 31 100.0 34 ............................... GCTACCCGCATGCTCCGGGCGCATGAACTCCTGG 124646 31 100.0 34 ............................... ATGATGTCTGCGTCTCCGGCGTTGGAGATGAAGC 124581 31 100.0 35 ............................... CGGCGGATAAAAACAACACTAGAAAACTAGTTAAT 124515 31 100.0 34 ............................... CTTGAATTTGCGGAGTTTGTTTTCTATGTTATTA 124450 31 100.0 34 ............................... TATATTTTTGATCACATGCGCGCGGAGGATGATT 124385 31 100.0 34 ............................... TCCAAAAATGGTTCCCCCAGGGTATTTCCGACCC 124320 31 100.0 34 ............................... AAGGCGGTCATCAGCAAAATCTTCGACCGAATTG 124255 31 100.0 34 ............................... ATTATCCTAAAACGGCTAGGGCATCGCCCCGTTT 124190 31 100.0 34 ............................... CGGCACAAGTCCAGCATGGCGGCATTGTCCAGTA 124125 31 100.0 35 ............................... AGGGGAATAAACCGCATACCTGTCCTCCAGCAACC 124059 31 100.0 35 ............................... CGGCACCAGCTCCTCCATCTCCGGCCCCAGCCATC 123993 31 100.0 34 ............................... TCCTACCTGATGGACCCGATGAACCCGCGCTACG 123928 31 100.0 34 ............................... TCCTACCTGATGGACCCGATGAACCCGCGCTACG 123863 31 100.0 34 ............................... CATGCAATGTATTGAATGGAGTCGTCTCCCAGGG 123798 31 100.0 33 ............................... TTCTAGATAGGGGGAACTAAGAGTCAAAAATGA 123734 31 100.0 36 ............................... CGTCACGTATTCGGTACGTGCGTCAATGAGGGATTC 123667 31 90.3 0 ..............A...T........C... | ========== ====== ====== ====== =============================== ==================================== ================== 56 31 99.8 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : ACGGGGCCGCCCTTGAGGGTGGCCCCGTTTCATGTTGGCGGAAAAGAGACTAACAAATGGGCGGGAATGAAAAATGGAGGCCGGAAAAAAAGCGGAACTCACCCTTGAAAACTCTGTGGACAAATGCCGGGACTGTCCTGGAAAAATGAACCGGGAATACGGATGAAAGACAAGCCGGGAATGACGGTGGTGTTCAAAGAAGCTTCTGGACGTTCCCCCAGGGAATGGCTAGCATGTCGGCATACCACCTGACTGTGCACAAAGCGGTCATGGCAGGAACATGAAACAATTCGTGCATGTCCTTTCTGCTGCGGCCCCCTTGCGCCAACCCCAAGCTCACAGAAAATCGCCGGGAAACTGGCGCACTCTGTAAGTCATTGAGGCTCGAAGATTGACAAACGAACCACTCATCATTACGACCTGCAAGGCGCAGGATGATTGAACAGGTTGGCGCAAAACGCCATTGGGACCTCTGACTTTCAATCCCTGCGCTTCAGGCC # Right flank : GCGGGGACGCTGTTATATGTTGCATACTTGCAGTTTGTGATGGACAGGAAGGAGGAAAAAGAGTGATATGAGTACGGTATGCAAAAGGATTGGTTGAAAGATCTTTTGGAGTGGAGTCCCCTCTTTCTGGTACTTCTGGCAGGGGGAGCGCTGTGGCTGTATTCCAAGTGGCAGCTCAGGAAGGTGGACAGATCGTTGGAGGAGTTATGGGGGAGCATTATCCGGAAGGCTGAGTCGGGCGATGCGTATTCCCAGTTTCAGGCGGGACGCATGTATCAGAAGGGAAATGGCGTTTCCAGGGATGCCGTATTGGCGGATGAGTGGTTTCACAAGGCGCTTCCCGGATTGAATCGGGAGGCCAATGCCGGAGACAGGGACGCCGCCTTTTGCCTGTACGAGTGTTTCAGAGAAGGGCTGGCTGTGCAGAAAGATGACGCCAAGGCTCTGCTGTGGCTTCAGCGCGCCGCGGAACAGGAGGAGCCGGAGGCCATGTTTGCGCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2234296-2233794 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072051.1 Akkermansia muciniphila strain Akk0196 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2234295 33 100.0 34 ................................. ATAATCCGGAGGACGTGGCGGCCCTCCTGGATGC 2234228 33 100.0 33 ................................. CCGGACACCTTGGCATCACCGTACACCTTGGCA 2234162 33 100.0 35 ................................. TGTCGGACATGAGCGAGAAGACCCGCGAGAAGTTC 2234094 33 100.0 34 ................................. GAGGACCCGGACGCTACCTGGAGAGCCGTGTTGC 2234027 33 100.0 34 ................................. GTGGAGATTGCGAAGAATGGAGGGGTGTTGCTGG 2233960 33 100.0 34 ................................. AGCAGGAAGGAGAAGCGTTTGTTTGACGCCTGGG 2233893 33 100.0 34 ................................. TGAGGCTGACGGGTACAGGGCTGCCGACACGACG 2233826 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 100.0 34 GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Left flank : GCTGCCCACAAAATCCCGGGTCAAGACCCTCCAGTACCGTTCCGGCATCACGGCCTACTACATCCTGACCATCCATCCGGACTCCATGACGCTGGACACCTACGCCGCCCCCAACAACGGCACCACGGACAAGGGCCCGCAAAGCGACGAATTCAAGAAACTCCCTTCCTACCAGATCCCGATGGATTAAAGGAAAGAACATTCCTTCCCTGTTCACCGGAAAGGAAACTGGACGCGCTTGAGCTTTCCGGATAAACTCCCTTCCACCTTGGAATGCCAGGGCAGAAAGAAGGAACATGCTCACCTCCCTTCTGCCGGACAGCGCCAACCTCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTGCTGCAAGTTATTGAGGACTGCATATTGACATCATGGAAACAATAAACGGCGGGTTGGAAATATCCCACTGATAAACAGGTTGGCGCAAAACATCCTCTGCCCACCTGAACATCAGCCGGATACCTCCCCTGCC # Right flank : CATCCACGGAAAATGGTTTACCCAAAAGCTGTTGGTCGCACCTCACATGAGGTGCGACTAAACCGTTTGGGCAAGCGTTGGAATATCCATCAGAGCGGACAGCAGAAAGAAGAAAACCGCATTTCCCTGACGTGATTATGTTCGCGATAGTTTCTGCACAAAGATTCCGTCCAAGTATTCCGCCTTGCTGTCCAGTCCATTCAACCGTTTGTTTCCTCATGGCCGAATTCCGGCTGAAGGTTTTGTTCTTCCACGGCCTACCTGTTTCCCGCCAAAAAGCAATGCCGTTTCCATAAAGTCTTTTTTCCTGCCGGATGTAAATCCGCCTTTCCTTGCCTCTCCACCAGCCTCTCAATTTGACTTTTTCCACATCCGCGCTTCCCCCAACGGGATATTTTCCATTCAGCTTCCGTATTTCATTTTTTCTTTTCCTCCCAGTTTCAGGCCGTTTCCATCCGGGCGGCCCACGCATTTCCACGCTCCACAACCCGTACCCTGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2524411-2524960 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072051.1 Akkermansia muciniphila strain Akk0196 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2524411 31 100.0 35 ............................... TCCAACACTCCCAGGAAAGCACGAGCCTCACAGAG 2524477 31 100.0 33 ............................... CCGTCCGCCGCCGGATAGCTTGACGGAATGAAG 2524541 31 100.0 34 ............................... GGAAAGGACTGCCTGACCGAGCCGCTGCGGGTGA 2524606 31 100.0 33 ............................... TACGTATTGCCTGGGCATCGCCGCTTCCATGGG 2524670 31 100.0 33 ............................... ATCCGCCGGTGCAAGGGCGGTTACATGCCCCAG 2524734 31 100.0 35 ............................... AGGCAATCGTCGGGCATGATTCCCGTGATGTACAT 2524800 31 100.0 34 ............................... ATCGGGGCGACCAACGAGCCCAAGCCCCTGAGCG 2524865 31 100.0 34 ............................... AATGCTGGATGGAAAGGTCCGGTCTCTATCTGGA 2524930 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 9 31 100.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GATGGCCTGCCTAGCGTCCGCCGTTTCGCTCTTCCTTGTCTGGCTGCTGAACCTCAACAGGTGGACGCGCAAGAGCATCATGTAAAAGATCCGGATATTTGTTTGCACGGACGCTGCGGAACGAGTGAAACTGTTCCGCAGCGTTTTTTGTTCGGAAAGGCTTTTTTCCGTGGGGGACAGCAAAGGCTGCGGTGTGGTTTGAGGAAAGTTGCTGGACGAATCGTCGTGGTCATTTTATTATAAATACGCATCACGTGCAGGCACCGGTTGTCCGGATGAGGCATCTCTTTTGAAGAGAAGAATCGGCATCCGTGGTTCCCGGCGCCAACCCCAAGCACACAGAAAATTCCCGGAAAGTCGGCGCTTTTTGTAACCTGTTGGGGATGTTAGATTGACAGTAATGATCATTTTTTAAGGCGTGGGTACTTGCAGATTGATATGGCAGGTTGGCGCAAATCATTATTTGTGCAATTAATGATCAATTTGTAAGCTCCCCCGCC # Right flank : CCGGGATGCGGTCCAGATACCTGCTCAGGTCAGCGTTGTAACGCGCCATGACATCTGATCAATTGACGACAGGTATCTGATCAATTTAGCCGTCCCTGCCTACTCCGGGCAGGGGGTGTGCAGGGCTCCTGCATCGCCTCTGCAAGCGGCCATCAGGCCGCCCCAATCCACCGCCTCGTCATCCTCCCTGGTCACACCGTCCTGCAGCATGGCCGCCCTGGCGTCGGCCAGCAGGTGCATCACCCTGGCCCGCTCGCTGGCCGGCTGGTGATCCTGGCGAGGGCTGCCGGTGGTTACCATTGCAAACCTGGCCGCATAACTCTCGGCGCTCGCTGTCCGGCTGGGCCAGCACCAGGCCGTCCACTCGCTCCAGGGGCTGCGCTGCCTCCACGGCTCCTCGATGCGGCACACTGTTGCCGGCACCCTGGCCAGCACCTCACGGCCGATGGTCACATCCTCCGGCGCTAAATCATCCAGCAGCGTCCAATCCATCTCCCGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2558436-2558793 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072051.1 Akkermansia muciniphila strain Akk0196 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2558436 31 100.0 36 ............................... AAATCCAAAAGAATCATATCAATCCCTTATCAATAA 2558503 31 100.0 35 ............................... TATGATCTCCTTAAGAGAGTTTTTGCCTGGCATCT 2558569 31 100.0 33 ............................... CCCTCACGGGTCCGCTCACGTGCAGGCAACTGT 2558633 31 100.0 34 ............................... TCCGGCCGACGCCTGTTGCCTCCGCTACGTCGTA 2558698 31 100.0 34 ............................... CGCGTTACATAGGAGGTCGTCTCGCGGGAAAATA 2558763 31 74.2 0 ...T...................TCAT.CGG | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 95.7 35 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CCAATAGGTCCTTTATCTTACCTGACCTCTCCGCAATATCCTCGCACGCTTTAGCAGTGACGTCGTCCTCATCCCTCAATCGCATGGCATGCAATTTGTCTATGGCATCATTGAGCAGGTCCATGAGGTCCCGGCGTTGTTGATGATAATTGATTAGTCTCGATGTGATGTTGTCGTCCATGACCGACACATCGCTCTGATTAACCTCACAGTCCAGTCTATCCGGACATTTTTAATTTTTCGTCGGGTAATCCTTGGCGATTTCGATTTCTTGCAGCGTGGACCCATATCTGTGCAGGGCGTCTGCACACCATCTGCATAGATCTTTCCTGGGTGATTCGTTTTGATCAGATACTTGTCATTGACCCGTGTTTTGCCCTCCGTTTTGATCAGATACCTACTTGTGCTCGGCATCGCTTGCAACCTCTTTTGTTTTCAAGCTTCCAACGGATTTCAACCTTAATTCAACACTGATCAACTATCCTGTCGTCCCTCAGCGT # Right flank : GATTGTTCATATTCCAGCATAGTGCTCCTTCATGTACACAGGAGAATGAATAAGCAACAGTTATGCTTCAATATTTCACGATGCTAGAAAGCCGCCAGATTTTTTCTGGCGGCTTTTTTGTGTCGGTTAAGACAGGTGGGACAGGCCCGGATGATTCAAGGCCGGTCAGTCTTCCATGTTATCCCCTTATGGATCATGATTTCCCGTCAGTCATTCCACAGGTATTCCTGATATTTTATCAGGCTTCCTGCCTCCGGCAGCTGTTTGTATGAGATAGTTTGCCCTGTGAAGACAAGGGGTTATCCCGTTATTGCTTCCATCTTTTGAGGTGCGGGAAGAATTGCTTCATGCCGGACCGGGCTTCTTCCACGGTATATTTCTTTTCCGAGTCCTTGTTGAATTCATCAAGGTATTCCAGGTTGTGCTCGATCATTTCATCCATGGTGCAGTCCCGGGTGAAACGGCCCTCTGCATAGCAGTAGTGGCAGTAATCCTCGTTG # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2684704-2685515 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072051.1 Akkermansia muciniphila strain Akk0196 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 2684704 31 100.0 34 ............................... TATTACGACAAATCCCAGGTCTATACACGACAGG 2684769 31 100.0 34 ............................... CCATACCGGAAATAGTACCGTCCATGTGACGGCG 2684834 31 100.0 34 ............................... TGCTCTGAAAAACGGTAAGGGCGCCAGACTGCCG 2684899 31 100.0 34 ............................... ATGACTGCGTGCCTGGACATCAACCCGTCTTGGG 2684964 31 100.0 34 ............................... GGTGCGCTCCTCTGTCTCACGCCCCACTCCTTAA 2685029 31 100.0 34 ............................... CCGGCGCACAGTTCGGCGCGATCCAGCGGGAGAC 2685094 31 100.0 34 ............................... TTGCACAGCGCAGAGATGCAGCGCTTGCTCCCCT 2685159 31 100.0 34 ............................... ATTGCCACGGTCATTGACCGCATCGGGACGGGCA 2685224 31 100.0 33 ............................... AAGGGAGGCAGCGGCGTGGCGCATGTGCTGCGC 2685288 31 100.0 36 ............................... GATTGAGGCGGCAGAAGGAATTCCCCCCGCCATCTG 2685355 31 100.0 34 ............................... TGTGATTATCAAACAAAAACCGTTGAAACCTACA 2685420 30 80.6 34 .....C....T...A....A....-....G. CCGAATGACTTTTAGTCTTTCATCTTTAGTATTT 2685484 31 83.9 0 ........T...........CT...A...T. | A [2685504] ========== ====== ====== ====== =============================== ==================================== ================== 13 31 97.3 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCGCTTTTTTCTCCATTTCACAGGCTTTCCGCTCCAAGAACGGAAAGCCTTTTTTATGCCGGAATGTTGTCATGCACGGCGTCCCTCGTGCCGCACGGTCGGGAATTGTCCGGAAAACGAATGTGGAAGGTCCCATGAAATCATGGAAGGAGGCCTTTTCCCGACCTTCTTCCTGTTCCGTCTTCATCGCACACGCGGGAAAGTTTCTGGACGAAAGGCGCGGAACGGAATACTATGGCCTCTGCATCGCAGCAGGCGAGGGTTGTCGGGACGGCTGGAACGACTTCGTGGCGGAACCTTCCTCCGTCCTTCTCACTCACCGCGCCAACCCCCGGCTCACAGAAAAATCCCGGAACACCGGCGATTCCTGTAACGCTCAGGGTATCTTAGATTGACATCTCCCCATATACCATTTTAGGCGTGGAATACGCATCTCCGCGGACAGGTTGGCGCAAAATACCCTTTGCGTGCCTGACTCTCAATATGTATATATCCCCGCC # Right flank : CCATCATGAACGCATGTTCCGATGTTTTCTTATGATGATTCCTTTTGGCTGAAAGGCTTTTCCATGACGTTCAGGCCATGAAAAAGCGCCGGTTCCCACAGGGAGGGGACCGGCGCTTGCGGTATAAGGGGGGAGGGGTTAATGGGCGCAGCCGGCGCAGGCCCAGCCTTCGCGGATTTTGGCGAAGAAGTCGTTGCCCTTGTCATCCACCAGGATGAAGGCAGGGAAGTCTTCCACTTCAATTTTCCAGATGGCTTCCATGCCCAGTTCCGGGTATTCCAGCAGTTCCACCTTTTTGATGTTGTTCTTGGCAAGAATGGCGGCGGGGCCGCCGATGGAACCCAGGTAGAAGCCGCCGTGCTTGTGGCAGGCGTCCGTCACCTGCTGGCTGCGGTTGCCCTTGGCGATCATGATCATGGAGCCGCCGTTCTCCTGGAACAGGTCCACGTAGGAATCCATGCGGCCCGCGGTGGTCGGCCCGAAGGAGCCGGAGGGATAGC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 3105854-3105617 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072051.1 Akkermansia muciniphila strain Akk0196 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 3105853 33 100.0 34 ................................. CACTCTATTTTGGATGCGGGAAGTAGCTTGTGAG 3105786 33 100.0 34 ................................. CATCCGTAGGAATCGCCGTCGGAGTAATGTCCGT 3105719 33 100.0 34 ................................. CCACTGATTACCAGCACATGCGCCCGCCTATCAA 3105652 32 87.9 0 ......................-......T.CG | C,TC,C [3105621,3105624,3105629] ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.0 34 GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Left flank : TTTCTCTCCATGTATATTCTCATCACCTACGATGTTGTTACGGAAGACAAGGCCGGCCAGCGCCGCCTGAGGCGGGTTGCCCGTGCTTGTGAAAACATCGGGCAGAGAGTACAGAATTCCGTGTTTGAATGCGAGGTCTCTCCGGCCCAATTGGTTGACATCAGGAGCAAGTTGCTTAAAATTATTGATCAGGACAGCGACAGCCTCCGGATTTACCACATGGGGTCCAATTGGCATCACAAAATCGAACAATTAGGCAAGGAAAAGAGCTATGACATTTCCGGGCCGTTGATCATTTGAGTGCTGTTTGACATGGCCTTTGCGCCAACCCCAAGCTTACATCAAATTGCCGGGAGGTCGGCGATTCTTGTAAGACATTGGAAAACGCAGATTGACAACCAAGTATGATGAAGAGAAGACGGTATGTGATGTGCCGTCTTCGTGAAGTTGGCGCAAAGCCTCACTTGCATGATTGATTAACAACATGTACCGTTGAGGCA # Right flank : ATGATTAAAAAGCACCCCGGACCAGATAAGTCCGGGGTGCTTTTTTGTTTTCTGCCGCAGGAGTCAGAGAATGGGACGATCTTTCGGGTTGAGTTCGGCGGGCGGCAGGGAACGGAGCAGGGCCAGCAGGGGGTCCTGCACTGCGGTTCCTGTTTCACTCTGGCGTTTGAATTCCTCTTCTTCCTGCTGGAGGGCGGCTAGTTTGGTGTCTTCCACCAGGGCTTTGAATTTGTCCGCCTGGGAGTATTCTCCGTCTGTATCCCGGAAGACACGGGCAAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGATCGTTCATGAGTCCGGCTGTGTTTGTTTGTCCAGCAGGTTTCCGGCCAGTTGCCTGCCTTTCTCTGTAGAGCGGTAGACATAGGGACGGCAGTCCCCGAAGCGCTCCACGTAACCCTGCGCGATGAGGTCCTGCAAAATGTTTGTAACGGTGTTGGGGTGCAGCCGCGTCGTTTCCGTGATGGTGCT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //