Array 1 6103-6925 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELW01000001.1 Thermus scotoductus strain 27_S27 NODE_100_length_8190_cov_65.0009_ID_199, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6103 29 100.0 32 ............................. GGGAGGCTGGCCGGAGGTGTCCTTGGCCTCGA 6164 29 100.0 32 ............................. CTCTCTATGTACCGCCTCGCCTCCTCCCCCTT 6225 29 100.0 32 ............................. AGGCCCCCTGTACCTCCACGGCAACCTTGCGC 6286 29 100.0 32 ............................. ACGCTGAACCAGCTCAGCCCCATCTGAAACAT 6347 29 100.0 32 ............................. AGGGGATAGAGGCGGTGGCCCTTGGCGGCCTC 6408 29 100.0 32 ............................. GGGAGAGGGGAGCACGATGGGGTCCAGGTCCT 6469 29 100.0 32 ............................. CCGGTGCTGCGCTTCGTGTTCGAGGACGATGA 6530 29 100.0 32 ............................. CTCACTCCGGGGGAGGCCCAGGCGGTCAGGGG 6591 29 100.0 33 ............................. GCGTCCAGCGTGCTTACCCTGCCCGCGGGTACC 6653 29 100.0 32 ............................. TGTTGGTAGACTATGGGGAGATGGTAGGGTTA 6714 29 100.0 32 ............................. AAGGCGCTTCAGGAGGGTGCGGGCGTCCACGT 6775 29 100.0 32 ............................. CCCTGGTCCATTTCCGATTGGGCACTGGGGTT 6836 29 100.0 32 ............................. AGTTGGGACCGCTTAACGCTCAATAATCCAGC 6897 29 82.8 0 ........G.T...G.C..C......... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.8 32 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CCAGAGGAAGAGGTGGACGAGGAGGACCCGACCCGTCCGGGTGGCCTGTGGGACCCGGAGGGAGTGGTGGAGGGTGGGGTGGCCTATGGTGGTGATGATCCTGGAGAGGGTGCCGAGGAGCCTGAGGGGTGAGCTTACTCGGTGGCTGGTGGAGGTGGATACTGGGGTTTTCGTGGGCCGGGTGAGCGCTGCGGTGCGGGAACTCTTGTGGGAGAAGGTGGTGGAAAAAGCGGGTGAGGGCCGCTGCGCCATGGCCTGGCGCACGAATAACGAGCAGGGCTTCGCCCTCCGGCTGCACGGGTATCAGGACCGGGTCCTCAGGGATTTTGATGGTATAGTGCTGGTAGCGGTGCGCAACGCCGAGGCTATGCGAAAGGCGGATAAGTTAAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATGT # Right flank : GGTAAGGGGAGCAGTGAAAAGGCTTTTGCGCAAGCGCTAGAGGGCAAGTAGCTTCTCGAGGGCCTTGAGGTAACGGCCCTGTCAAGGAGCCCTCCCCACCGGGTTTGGGGCCACTCTCCGCTTAGGGATGCGGGCTCAAGCCTAATACCCTCCCCGGGCTAAAGCACTGGGTGTGGTGCGCGAAAGCTACGTTTCGCGAAAAAGAGACCCTACTGCCCCGCCCTGCAGTTTCTTGGAAATTCATCGGTACTAGAAAGGGCGGAGAAGCCTTTCGGGCACCTACCCCTTCCCCAAGGACTGCGGCCCTCCCTTCAAAAGGAAGGGGTTCCTGCCGGTTATCCGGCAAGAAACCCAGGCGACCCGGGGCCGCTTACCGCCGCCTTCACTTCCGTCCTTCCCCAAGGGCCCATGCCGGTTCTTGAGGAGGACGCCCAGGCTGTAGACCCGCTTTCCCACCTTGACCACGAAGGCTTCCAGCCTGTCGCCCCGCCGCACCACGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2175-1684 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELW01000134.1 Thermus scotoductus strain 27_S27 NODE_220_length_2675_cov_98.0785_ID_439, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2174 36 100.0 41 .................................... GCGGTAGTACATTCCCGTTTTAGCCTTTCCGACCAGACTAT 2097 36 100.0 38 .................................... GTTTGGGCGTGTTCCCCGTATCCCCAAACCGCCCCGGG 2023 36 100.0 39 .................................... GAGTTTTCTGCTCGGCGACAAACTCCTTACCGCACCTCT 1948 36 100.0 40 .................................... GGCCCTGGAAGCCCTGGGCCTGGAAGCCACAGGTGTACAA 1872 36 97.2 41 .....................A.............. TGGAATGTGGATCCGGCGGGCGGTAGGGCCCACAGGGGCGT 1795 36 97.2 40 .....................A.............. AGCTTTCCTTTGCACCCCAGGTCGGGTACCCTGGTCCTTA 1719 36 69.4 0 ....G.C.............CGGCT.A...A..C.T | ========== ====== ====== ====== ==================================== ========================================= ================== 7 36 94.8 40 GTTGCAAGAGATGCTTCCCCGTAAGGGGATTGCGAC # Left flank : AGCTTCCTGGGGTAGTAGCCGTTTTTCCGCCCCCCGTGTTCCCGCAAGAAGGCTTCCCGGTCGGCGTTGAGCAGGGCCTGCAGAACCTGGGTTACCGTTTCCCTCACTGCTTCCCTCAAGATCATCTGGAGGGTATCCTGATCCATGGGGTACCTCCTCTCCCGTTGGTACCCCCATTCATACACATACCCTTACACATAATTCCTTACACGACCCTACACGACTTCCTTGCACTCTATTGAACTCAGTCAAGCGTTACGTTCAAGTGGTATAATCGGGGTGTCCGGAAAGCCGGACGAGGATCTTGAAAGCCGATTTTCCTCTTGCGCAAGGGCAATATGCGTTTTCACCTTCTTATCGACCGCTTCTACAGTGGCTTCGCAACGAGCTAAACCCCGCAAAACCCCCTTTATTCGCCATATGAATATTCCAGACTTCATGATTCTCACAAACCCCCCCTCCAGGAGCACCGTCCAGGACGATGTTCTAAGGGGGGTACC # Right flank : TTCCCTGCCTTGCCTCTCTCTTCACCCGGAGGCAGGGGTAGGGGCAATTGGGCTTCCCCACCTCCACCTGCCCCAGGATGGCTTCCACCGCCCGGTACAGCCGGGGAAGGACTTCCCTGAGAAGGTCCTGGGCTTCCCTTCCCGCCCAGCTCAGGATGTAGTCCCTGGCCCCCACCATCTCCAGGCCCAGCCTGGTGCCCACCACATAGGCCACCGCCTCGGCCTCGAGCTCCTTCACCCCACGGGGAAGCCCCCTGCCCGCTTCGTCAAAGTGCAGCAGAGCGTGCGCCCATTCGTGAAGCAGGGTGGCCGCCTTCTCTCCTGGGGGCAGGTCCCGATTCACCCGGATCACCCGCCCATCCGTGTCCCCGTGCCGCTCACCCAGGGAGGCTTCCACCACACGGAAAGGGCAGGCCTCCAACAACCTGGGGAAGAGGTCTTCCGGCCCCCTGTTCATGGGGGGTTCCGCGTGGGGCTGGCCATCGGGGTAGACCAGGGCC # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAAGAGATGCTTCCCCGTAAGGGGATTGCGAC # Alternate repeat : GTTGCAAGAGATGCTTCCCCGAAAGGGGATTGCGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 6285-7170 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELW01000188.1 Thermus scotoductus strain 27_S27 NODE_26_length_18641_cov_82.2632_ID_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6285 29 100.0 32 ............................. AGCCACAGGCTCAGCCCGCACCGCCTTACCCC 6346 29 100.0 33 ............................. TAAAGCGTCCAGGTGGGCGGTTGCGCCCATCGC 6408 29 100.0 32 ............................. CCACCGGGCCCGGCGTAGGGCCCACCGCTTGC 6469 29 100.0 32 ............................. TTCGTAGCTTAGGTCCCTCCCAACTTTGTCCC 6530 29 96.6 32 ............................T TGGTAGCACCCCCGGGGTCATCGGGGTGGTCG 6591 29 96.6 32 ............................A TGGTCAGTTGGTCCGGGACAACCGGCTTTTCC 6652 29 100.0 33 ............................. ACCTTCCCCACGTTTGGCCGTGGCTGGATGCGC 6714 29 100.0 32 ............................. TATCTCCGCTTCCGGCTTGCGGGCGGTTCTAG 6775 29 96.6 32 ............................C GTTGTGGAACGGCCTCTCCCCCCACACCGTGC 6836 29 100.0 31 ............................. GGGGGGCGGTTGTATTGGCTCGGTACAACTC 6896 29 100.0 33 ............................. ATACGCGCGCTCTGAACTCGGGGCTGCCAAACC 6958 29 100.0 33 ............................. CTCATCCGGGGGGAGGTCGTCCCCCTTAATGTC 7020 29 100.0 32 ............................. GCCGCGGCCCCCAGGTAGGTCAGGGCTATGGT 7081 29 100.0 32 ............................. ACCGGCGCTACGAGGCGCTGGAGGCCCTCCTC 7142 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 GTAGTCCCCACACCCGTGGGGATGGACCG # Left flank : TTGGGGTAGGGAGCGGGCGAGCTTCTCCAAAGCGGTGCGGTACTGGCGGGTCGGGGCCTGGTGGTAGATGAGCCTTCCGGCAGCGAAAAGGGCCAGGGCCTCCACGGGATGGAGAGGTGGGGAACGATCCGGGATAGCGTACTCTCCTCGGCGGCGGCGCTCCACAGGGTAGCCGAGGTCTATCAGGGTCTTAAGGTCTCGCTCCACGGTACGTTCGCTCACGCCAAAGCGCCGGGCAAGCTCTCCTACCCGCATAGGCCGGAGCTTCAGCGCCTCGGCTAGCTGAAGCAGTCGGGCGCTTTTCGCTTCCTGTCCCATATCAGCAGTTTAAGGGAGTTTCCGGAATTGCTGCGTGAAGGTTAGCCGTGCTAGACTACAGGTGGTGCCCCCTTTTCCTCCCCTTCTTCCGGGGCTGCGGAGCTTGACGACATTACCTGTTCTGCCTCCCGAAAAGACACATAAAGGGAGGTAAGCGGGCGTTTTTGCTGTCCTGATCAAGT # Right flank : GGAAGTGAGCCCGGAAAGGGCAACTGGGGACGGGGTCAGGGAGCCTTTTAGAGCGGGATATGGCCCATGGGTCAGGGGTCACGGGGAAGCATACCTTGCAGCCCCCGTTCTTCAGAACGGGGAGTTGTCACGGCTAAAGCGGGAAAGGGGGTCCGGTTCCCCCACGAAGGCGTGGGCGGTCATGGGGGAATGAGGACGGCTTGTTCGGGAGCCAGGTGGGTTTCGCCAGCAAAACCCCCTTGCCCTTGAGGACCAAGGCCACCTCCAGCCTTTCCCGGTGGTAGGGCAGGGACTGCTCCTTAACGGTACAGATGAGGACCGAGGTGCCCAAAGGGGTCTCCCCCACCCCCTGGGCGGCGAAGGGCCGGCCCGGGGGCACGGAGAAGTTGGCGAACTCCCCGGGGTAGCGGCGGAAGATCCCCTCCCCCGTGGCCGGAACCAGGGCCCAGGCCCGGCCGGCCAAGGCGGAAACCAGAACCCCACCTGCAACCTGCAAGAAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9037-7607 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELW01000371.1 Thermus scotoductus strain 27_S27 NODE_49_length_13068_cov_70.6979_ID_97, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 9036 29 100.0 32 ............................. CCGCTCGGTGCGGTTGAGGAGCCGCTGGAACA 8975 29 100.0 32 ............................. CCTCGCCCCTCCGCCCCGCTTGAGCCGGGAGG 8914 29 96.6 32 ............................C CCATGCGGGGGGAGGTGGCGGTGCTCGTCGTC 8853 29 100.0 32 ............................. GAAGCGCGCTCGTCCCTGGGGCAGGTCCAGGC 8792 29 96.6 32 ............................A CAGGAGGTAGAGATGCTGGAGATCGATCTTAC 8731 29 100.0 31 ............................. ATCTTGGACGATGACGATGGGAATGTATGCC 8671 29 100.0 32 ............................. GTGCCAGAGGAGAATCTGGGCACCATTCACTC 8610 29 100.0 31 ............................. GCCTCGGGTTCCTCCATCGGGAGCGGGTGGA 8550 29 96.6 33 ............................A GTGGAGGGGCGCTACGCCCTGCGGGTGGACTGG 8488 29 96.6 31 ............................T AGCCCGTCCTGGAGTACGGTGCCGGGCGGCC 8428 29 100.0 31 ............................. GCTTCCCAGGCGGGCCAGGGCCACTTCCAGC 8368 29 100.0 32 ............................. TATCCCGGATGAGATTGGCATTGAAGTAAGCC 8307 29 100.0 32 ............................. TTTGAAGAGCTTTTGCGTCCGTGGGAAGAGCA 8246 29 100.0 32 ............................. AAGGCTGCCGCCGAGGCCAAAGCCGCCTCCGA 8185 29 100.0 32 ............................. CCATCGCCTCCGGCGACCTGGCCGCCATCACT 8124 29 100.0 33 ............................. GATCCCCTCCTCATCGTAGGAGATCCAGAGGCC 8062 29 100.0 32 ............................. TTGCCGCGCCGGCGTACTCAATAACCGCGTGG 8001 29 100.0 32 ............................. CCGATCCGCGCCTGCTCTAGGTCGGCGTAGGC 7940 29 100.0 34 ............................. CAGTACCTCAGCGGCCCTGGCCTACATGCGCCAC 7877 29 100.0 32 ............................. CAAGGTCACCCCGCTCGCTCCCAGGCGCTGGA 7816 29 100.0 31 ............................. ATACGTTTCGCGCACATACAAGGCCGCATCC 7756 29 96.6 31 ............................T ATCGGCGCCCGGGAGCTCCTCGCGGAGCCCC 7696 29 96.6 32 ............................T GTCCGCTACGCTGCCACACACCAGTACGGGGC 7635 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 24 29 99.1 32 GTAGTCCCCACGCCCGTGGGGATGGACCG # Left flank : GGATCCTACCCGCCCGGGGGGCCTTTGGGACCTCGAGGGCGAGGTGGAAGGCGGAGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTTCCGAGGAGCCTTAGGGGGGACCTCACCCGCTTCTTCGTGGAGGTGGACACTGGCGTTTTCGTGGGCCAGGTGAGCGCTTTGGTCCGGGAGCTGCTTTGGGAGAAGGCTCTGGAGAAGGCGGGCGAGGGACGGGTGGCTATGGCCTACAGGGCGAACAACGAGCAGGGCTTCGCCCTCAGGCTTCACGGCTACACGGACCGGTTTTTGCGGGACTTTGATGGTATACTCTTAGTGAGCACTCGGAACGCCGAGGCAATGCGAAAAGCAGAGAAGTTGTCCAAGTTATTTGCGAGGTACGAGAAACGCCGTGCCAAAGCTTCCGAGGGGGATCTTGAAAAGGAAAATCCGTAGCCACTCCCAACTAGACACATAACGGGGGGTGAGCGGGCGTTTTTGCTGTCCTGGTCAAGT # Right flank : GGCAGGAGGTAGAACCAAATGGGTGACGACTCCCCGGACTAAAGTCCAGGGCTTCTCGGGCATGGTATTGCTACCCCCGAAGGCCCCGTCCAGGCCCTTGCCAGGATGTTTTGGGCAGCGGCCACATCCCGGTGGAGAAGCGCCCCACACTGGGGACAGGTGTACGCCCGCACCCAGAGAGGCTTCTTCTCCCTATGGCCGCACACCGGGCAGTCCTGGCTGGTGTACTTGGGGTCTACCTTGATGACTCGCCTACCAGCCAAAACGCTACCGCTTGCGCGGTGAGCCGCCGCTTTGTAGGCGAGGATTGCGAGAAACTGGGCCCAGCCCGCATCGTGTATGCCTTTGGCTATATGGGAGCGGGAAAGGGCTTGAACGTTCAGGTCTTCGTGGACGATGGTTCCGTAGCGGTTCACCAGCTTTCTGGCCACCTTGTGGTGGAAGTCTTTGCGCTGGTTGGCGATCTTGCGGTGGAGCTTGGCTACCTTGAGCCTGGCCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5683-6140 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELW01000411.1 Thermus scotoductus strain 27_S27 NODE_85_length_9117_cov_52.0119_ID_169, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 5683 29 100.0 32 ............................. AGGTTCAGGTACATCACCCGGAGCTCGCCGAT 5744 29 100.0 34 ............................. GATGCCGTGGCCGCCGGGAAGCACCGGGAGCTCC 5807 29 100.0 34 ............................. GGGGCCATCCTCGCCCTCCTCCGGGGCGAGGCCC 5870 29 100.0 32 ............................. TACACGCAGCTAGCCCTGGACCTCGCGGGGGA 5931 29 100.0 32 ............................. TTGCGTCAGCCTTTTTGCGTGGTCGTGAGTGG 5992 29 100.0 31 ............................. GTCTTCCTCCTTCGCCGGGAGCCCGAGGCGC 6052 29 100.0 31 ............................. GGCCGGGAAGCTGCGGTGGTTCGTGAGGCAA 6112 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 8 29 100.0 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCCTAAAGGTGGTCTACGACCCGGAAATCCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGACGTGGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGGTTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCAGGCGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTCACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : GCCTATCCATACATCCTCAGCGTAGCCCCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGGGGATGGATCCAGAGGGGTGCGGGGGTTTCTACCGCCTTGCCCGGTTTACGGGGCTCCCTCTTCGGATCTGGCACTGGCTGGGCCTGAGCGCACCACCAGGGTGTCGGCGATGAGGTCATGCCAGGCCTGGCGCTTAGGGTGGAAGAAAGCCCAGAGGTAGCCAAGGAGGAGGGGCAGGGTGGAAAGGGTCTTGCCTACCACCTCCCGCATAAAGGCGGTGAGCCAGTCCACAGGCTGGCCGTCCGTGCGGACCACCTTGAGGCCCAGGGCCATTTTTCCCGGGGTTGCCCCATACAATGCGGTGAAGATCACGTAGTAGGCCCAGCTGGGTATCCAGTTGAAGAGGAGGTCCTGGACGAAGGTGGTGGTTTGCGCCAGGGGGTTTATCCCGGCCAGGGCCATCAGGAGGAAGCTCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4617-5808 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELW01000422.1 Thermus scotoductus strain 27_S27 NODE_95_length_8317_cov_82.8056_ID_189, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4617 29 100.0 33 ............................. CCCTGCAGCGTCTTGGCCTGCCGGTGAACCTTA 4679 29 100.0 32 ............................. CTCCGCGCCTTCTCCCAAGCGCTCCTCGCCCC 4740 29 100.0 32 ............................. GCCTCCTCTGGCCCTGACGAAGGACGCCCTGA 4801 29 100.0 31 ............................. AGCCCGGAGGCGGTCCTCCAGGGCAGGGCTA 4861 29 96.6 33 ............................A GGGTACATCGCGGGGATGCTCAGAGCGGCTCTG 4923 29 96.6 32 ............................C CATAGTCTCAGGCTCGGGCAAGGTCACGATCC 4984 29 100.0 32 ............................. GACTGGAGCCTGCGGGTCTACCTGGCGAGGGA 5045 29 100.0 31 ............................. GAGCCGGATCAGGCTCTTGGCGTAGTCCTCA 5105 29 100.0 33 ............................. CAGGACAGCGAGCCCCGTGAGCATGGCGAGAAC 5167 29 100.0 32 ............................. AGGGGGGTAGGTGAGGGAGGTAGACGCTCACC 5228 29 100.0 32 ............................. CTGGGGGAAGTCCAGCCCTACCGGACGGGCCA 5289 29 100.0 33 ............................. CAGGACAGCGAGCCCCGTGAGCATGGCGAGAAC 5351 29 100.0 32 ............................. ACCCTGCTTTCCCACTACTACGGGGTCCGGGC 5412 29 100.0 33 ............................. CTGGTGGAGGCCCTCAAGGGGGTGAAGGGGTGA 5474 29 100.0 33 ............................. GGGCGGGCACCCTGTCAGCACTCTTACACGCGA 5536 29 100.0 32 ............................. GGGGGCCGCACCTTCACCCAGGGCGTGGCCCG 5597 29 100.0 32 ............................. GAGGAGGCCCTGAGGCGCTTGGGGCCACCCCC 5658 29 100.0 32 ............................. TAGGGTCTGGGGGGGATGGTGACCTGCCTAGC 5719 29 100.0 32 ............................. CATCGGAGGAGGTGGGATGATGCGCAGGGCAA 5780 29 93.1 0 ..............C............T. | ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.3 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : TCTCATACTGGCGGGTCGGGGCCTGATGATATAAGAGCCTCCCGGCAGCGAAAAGGGCTAGGGCCTCCACCGGATGCAAGGTGGGAGGTCGGTCCGGAATGCGGTAAAGGCCGCGGCCAAGCTGCTCTATCCTGTAACCGGCATGGGACAGGGCCTCGAGGTCCCGCTCCACGGTGCGCACGCTCACACCGTAAAGCTGGGCCAGTTCGGAAACCCGGTGCGGGCGAAGGCTAAGGCGCTCCACCAGGGACAAAAACCGTTCCGCCTTGGACTTCGGGTCCATAGTTGGAAGCATTATAGCCTAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTAGGTCATGT # Right flank : GAGAATGTACAAGGTTGCCCCGTAGGATAAGCCCCCCAAAGCTTCGGCCAGGAGGGCCTCCAGCCTTCGCTGGAGGTCCATTTCCAGGGGCCGGAGGGCTAGCTGTAACGCGCCCGTAGGCGTGAGGAGGGAGAAGTGGAGAGTCGCCCGCCTGGGCGTGGGGCTTTCCCTGGAGAAGATCTACGAGAGTGTGGAGCTAGGGACTTCTTTCCAGGCCGACTTGGGGGCCAGGTAGTACCATGGAAATGCCATGGGGCCCGAGGAAGTCAAGGCCAGGATAGGGCCTTACCGGGAAGAGTTGAGGGAGCGTTTTGGGGTGGAGGCCCTCTACCTCTTTGGCTCCTCGGCTCGAGGGGAAGCGGGTGAGGGAAGCGACGTGGACCTTTTGGTGCGCTTTTCCCGTCCCCCGGGCTTTCTGGGCTACATGGGCCTGAAGCTCTTTCTCGAGGACCTTCTAGGCAGACCCGTGGACCTGGTCATGGAGCACACCCTGCGGCCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //