Array 1 447251-448674 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHLI010000001.1 Pseudomonas nitritireducens strain S00179 Ga0436327_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 447251 29 100.0 32 ............................. GCCTACAAGGACGCCGCATCCGAGGGGCGCTC 447312 29 100.0 32 ............................. ATTTCCTCAAGCAGCTCCTTCCGCCTCGTGCC 447373 29 100.0 32 ............................. TCCTCAACGTGACTCGAGCTCGTCACCTTCTG G [447390] 447435 29 89.7 32 ...........C...T.......A..... GTGTTTGTAGTTGAGGTCACCAGTTGCGAGAA 447496 28 86.2 32 .....G......-.A........A..... ATAGCCGGCGTGAAACCATCACCCGCCCTCCA A [447512] 447557 29 82.8 32 ..A........ATG.........A..... TGGAGCGGGTATTCAATGGCTTAATCCAGATT 447618 29 79.3 32 ..T..A..T..AAG............... TAGCTCTACTGCCTGCACAGTACGCAGAAAGC A [447620] 447680 29 86.2 32 ..A..........AG........T..... GGATTCTGGCTCCAGGTAGAGCAACGTATGCC 447741 29 82.8 32 ...........ATA...........G..T CACGCACGATATAGAGGTGTTATTGAGACCAT 447802 28 75.9 31 ..........A.G.-.T......CT..G. CCGACGACTGGACGGCTTTATGTGAGGGTAA T [447812] 447862 29 69.0 32 C...........TAT....A...T.T.GT CACTGCCGCCGTACCCCGAAGCGGTGACTGTA 447923 29 75.9 32 T.T....T..TA.AT.............. TTCTGGCCATAGGTGTGAAGGGGTGACTTGCC 447984 28 86.2 32 ..A.........-.A....T......... CTAACGAACAGCTGGCTGGTCGTTCTCGGCGT A [448000] 448045 29 75.9 31 ...........AGG.T........T..GT GGGATGACGGCCTATGTAGAGCATAAGCAAT 448105 29 75.9 92 ....A...A...TAT.........TT... CAGCGAGACAGCTACCGAGATGGACAGATCCTGCATTCCCGCGTATGCGGAGGTTATCGTCACTGCCGCCGCACACCGAAGCGGTAACTGTA 448226 29 72.4 32 A.T.G..T...A.AT..........G... TTGGCGACCTGGCCGATAGACCAAGAAGGGTT 448287 29 89.7 32 ............TAT.............. AACATTGCCGTACAGTTGAACATCCAGTGCGC 448348 29 82.8 32 .....T....T...T.T..........T. CGTGGGCCTTTGTCGCCGCGTATCTCGTGCCA A [448366] 448410 28 89.7 32 ...........-...A.........G... CGTTCGCGCCCGCCCGCTGGTGAGAAACAGGT G [448424] 448471 28 86.2 32 ...........-T..A.........G... TTCACGTGGCTGGCTGCTTCACCACCAGAATT 448531 29 75.9 32 ........T...TGT..T.....T.T... GTGGATCAGATAGAGTGGATGGACTGCAAGCA 448592 29 75.9 26 ...........AGG.......TG..G..A GGCTTTGCAAAATCGCGGCTTGGATC 448647 28 72.4 0 T.....T..-..T.T.T......A.G... | ========== ====== ====== ====== ============================= ============================================================================================ ================== 23 29 83.1 34 GTGTTCCCCGCGCTCGCGGGGGTGAACCG # Left flank : GCCCGACTACGCTCTGGATGCACACCGGCCGTTCTGACATGGTGATGGCGGCGGAGGATCGCGCCAGCGGTTTTCTTAAGCTGCGCGGCGCCAAGCCGAACCCGGCCGGAGGCCCGTTCAAGGCCTCGAAGTTCAACCTGGACATCGTCTTCGCAGACCTGGTCGGCTACGTGGTCGGTGACCGAGCCGGTATCGAAGCTCTCCTGAGCGATTGCCAGCAGGTCGGCGCCCGCCGTGGAACTGGCTTTGGTTGGGTCGAGTCGATCTCGGTGGAGGAGGTGAGCCTGGCTGAGTGCGCCTGGTACAACCGCTCATTGCCGGATGACTTCGAGGGAGTCGAGGGTGTCCAGCTCGATCTGGTTCGTCGCGTCGGCGCCTTGCGCGCCCCCTATTGGAAGAAGACTGCGCATACCGTTGTGCTGGCGCCATTGGGGCATTGATTCTTCGGTGGAATTTTAAGCACTGATTTTTCCCATATTTATCAGGCTGCTACAGTAAGG # Right flank : GAGCGCTTCAGGAGTGTCTGTTGCTATGCTCAAGTTTTCCCAATCCTTTTTGGGGTGAGCCGGACAGCAGCGTAACCCTAACCTTGGCGTTGATGTTTTCCCCTGCCATCACGGGGGTGTGTGGCGCGGCAACTGGCGCTTTACGTCCCAGGGTCAGTATTCTTTGCTTCGACGAGGGTAAGTGGCTCATCTCGAGAGTCCGGTACCAGATGGTGTCACCCGGATAGCCGGGGGGTAAATGTGAGATAACAGTGATGTCACATGGGTGTACTTCCTCACTTTCGTGAGGGTGATCGGTATGATGACCATGGCCATGAGCTCGACAACAAAGTCTTCCCCGCACAAGTGGGGGTGGGCTCCACGGCAAGATCAAATGTTGCAGCCAGTTTTCCCCGAAGCAGGTTGGGGGTAGGCGGATGACCCCGCACATTGCGAGCACTTCAAGGCTTCTCCAGGATTCTGGAGGTTGACGTAGACAGAAAAAGTCCGTGCTGCCGTTT # Questionable array : NO Score: 4.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.15, 5:0, 6:0.25, 7:-0.21, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTCGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [25-54] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //