Array 1 10286-10915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLM010000017.1 Listeria seeligeri strain FSL W9-0276 NODE_17_length_16222_cov_88.200619, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 10286 36 100.0 30 .................................... AATCTTTTGAAAAAGAAAAAGTTCCTTCTA 10352 36 100.0 30 .................................... TTAAGAATCTTTGATGCTACTTTATGATGA 10418 36 100.0 30 .................................... AAATCCAAAGGCGGTAAAAGCGCTTTTGGA 10484 36 100.0 30 .................................... AACATTTACCAAGACGACGACGCACCGTTT 10550 36 100.0 30 .................................... AGGCTACTGGCTGAAAGGAAGTGATAAACG 10616 36 100.0 30 .................................... AATATCTATATTAAGAATATCAAATTTACA 10682 36 100.0 30 .................................... ATAATAGAATTCACACGATCAATCAATGCG 10748 36 100.0 30 .................................... AGCATATGAAACACTAGTAATACTCATGTT 10814 36 100.0 30 .................................... CAACTTCCACAAAATAATAAAACGTGGAGT 10880 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GATTGATAAGCTGACTGCAACAATTAGCGAATTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTATTTTTTTCTATATTTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTGTTCCTCTCAAAAGGAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGTCTAAAACAAAACACCGAAGCAATTATCAATAACACGATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCAATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCCAAAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 49877-48742 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLM010000011.1 Listeria seeligeri strain FSL W9-0276 NODE_11_length_104305_cov_62.349704, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 49876 29 100.0 36 ............................. GTATAAGTTAGTTCTAAAGAAGTTTCTGGAACATCT 49811 29 100.0 38 ............................. TTAGATATTTCTACTTTTGACCAAACGCTTGCATTTGA 49744 29 100.0 36 ............................. TCTCTCACACCTCCACGAATTGTTTGCCTTTTAGTT 49679 29 100.0 36 ............................. TAAACTATACTAACCCACGAAAGGATGAAAAATAAT 49614 29 100.0 35 ............................. CGAGCAACCCACATAACAAAATCGCTTTGCATAAC 49550 29 100.0 36 ............................. ACTTTCTTATCATTATTTGTTTTTAGTACGGCTTTT 49485 29 100.0 35 ............................. ACCTTCACCTGCTTTTCGATTCGCGGCCACATTGC 49421 29 100.0 35 ............................. TGTTCTCAAAAGTATCACCTCTCCCTCATGTGTCA 49357 29 100.0 37 ............................. GTGCGTGGCTCGATGGCTACGAGGTTGAGCAAGAACT 49291 29 100.0 37 ............................. TTAGACACTCTCCCTCTTCAAGCATTAGCAACGCACA 49225 29 100.0 37 ............................. ACCAGTCACATGGCTACAGTCCTTCAAAAACTGCACA 49159 29 100.0 34 ............................. ATGGGACGTGTTAGGTTGGTAGATTGTATTTATT 49096 29 100.0 35 ............................. TCACGTTTCCAAACCAGTATTAAAGGTGCTAAGAT 49032 29 100.0 35 ............................. ACCGCCTACCGGTAAAATTGTAAGCAAATTGCTTT 48968 29 100.0 36 ............................. ATTGCTTGTTGAACCCAGCCGTTAACAGCTTTAGAG 48903 29 96.6 38 ....C........................ TAATACGTTGGGGAACGTGTATTTCGGCTCTTATTTTC 48836 29 93.1 37 ......GC..................... GTGGTCACAGCGTTCTTATTGCCAACTGGTGAGCCCC 48770 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ====================================== ================== 18 29 97.9 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGACTATATGTATGTGATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTTGGGGAGAATGGTTTTCGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATCTCACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTCATTCAAAAACCCCAGACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGTGGGGCTCTATAACTATAATGAACATAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTCTAGTAGGGTGTGGAAGTGAAGAAGCTTCAAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAATCACTTGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 60928-58491 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLM010000011.1 Listeria seeligeri strain FSL W9-0276 NODE_11_length_104305_cov_62.349704, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 60927 29 100.0 38 ............................. AATTTCAAGCTCTCTTATACTATCTAAAAATTGATGTC 60860 29 100.0 37 ............................. GTTACTAACAGGGGGGTTGAAAACAGGGTGAAAGTAT 60794 29 100.0 37 ............................. ACATTGCAGAAAATTTAAAAGGCCCGATTATTCAAGC 60728 29 100.0 37 ............................. TTTTTATCTGTCCCTTTAGGTTTTGATAGGACATATT 60662 29 100.0 36 ............................. ACGTCTTTCGTCGATTAATTATTTTAAACGGAGTAG 60597 29 100.0 34 ............................. TCCGCTTCAAAAATTGCTCCGCGCGGACCATCTT 60534 29 100.0 35 ............................. TAAATAATTCTGGTTCTGTGTTTAAAAGCAATAAA 60470 29 100.0 37 ............................. CAGGTTGCAATTATCCTCCTTTGGTAGGGGCTTCATA 60404 29 100.0 36 ............................. AAAGGAGTAGTCCAATCGTCCTCGCGAAAGTATTTC 60339 29 100.0 37 ............................. TTAGCTCTCAAGTCGTCCGCAACAAGCACGATGTCAT 60273 29 100.0 37 ............................. TCGTGAAATGATGGCAGAAAACGGTGAACAGGTTTCA 60207 29 100.0 36 ............................. AGAAGCAATGGATTCTGATTTTTGTGAATTTGAATC 60142 29 100.0 37 ............................. ACACAAATTGAGGATTACGTTGATTATAACAAGCTAG 60076 29 100.0 37 ............................. ATTGTCCCTACTACTTGTTTAACATTATAAGTAAACT 60010 29 100.0 38 ............................. AATAATGAAGGCTTATGCGATGAATAATCTACGGTTAC 59943 29 100.0 36 ............................. ATGAACTTCATATTTTTTAGTCAATTTAGAACCTCC 59878 29 100.0 34 ............................. AAGGCAACCCGCTCAGAAGTGTTCTCACGCTCGA 59815 29 100.0 34 ............................. GAACATGATTTCATGCTTGCAAACGTTGACAGAT 59752 29 100.0 36 ............................. AAAGAAGCCCTATCGTACAAACAACAATAACCATAC 59687 29 100.0 34 ............................. TCACCAAACCAGCGACTTTAGAATACACGCTACT 59624 29 100.0 38 ............................. CAGAATACGGATACTACAGATAAGCCCGCGGATATTGT 59557 29 100.0 36 ............................. CATTTCGAAAAGTTTTTGCTTGATTCGAAACTCTTT 59492 29 100.0 36 ............................. ACGACTCCTACCGCGAGCGATAGCGATTTAGCATTG 59427 29 100.0 37 ............................. ATGTTGCCGGCAACAATTCTTCTTGAATAGCTGCCGC 59361 29 100.0 37 ............................. TATTTATAACGCCAATTACCTTTTTCAGTCGCTACAG 59295 29 100.0 35 ............................. ACAAGATTGTGACTGCTGTACCTGTTTCTGCCAAG 59231 29 100.0 35 ............................. TGGGGGAAGGATATATAATCATAGATGTAAGCCTC 59167 29 100.0 34 ............................. TAGGCGGTGCCATTGGTGCTTTTGCGGGTAACGC 59104 29 100.0 37 ............................. AGGTTCCTCTTGGTGAGTTATGCTTTCTAATTCGTTC 59038 29 100.0 36 ............................. GAGTTTAATATTAAATCTTGCCACGGTGTTGAGTAA 58973 29 100.0 37 ............................. CAACGACAATGGTTACTTTTACAGATATGAAGCGATA 58907 29 100.0 34 ............................. ACTGGTAAATCTTTGACAACAATTTCTCCTTGGC 58844 29 100.0 37 ............................. CGCCAATTTAGTACCCGGCTGGTACCACTTTGTTTTT 58778 29 100.0 37 ............................. ATCTTTAGGAATTTAGTTACTCGCTTAGTTGCTTTCT 58712 29 100.0 34 ............................. TCATTTTCATCTGTACTTGCAAAAATACGAAATA 58649 29 100.0 36 ............................. GGAGAATGACTCGCAATAAAATTGGCATAATCTTTT 58584 29 96.6 35 ....A........................ ATATACGGTATCCGGTATACTCGCCGTCCCATTCT 58520 29 86.2 0 ........C....C..A...........G | T [58493] ========== ====== ====== ====== ============================= ====================================== ================== 38 29 99.5 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATAATTTTAGCATAGATAGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGGCCGACAGATTTGCGGGATGCATTGGGAGAGAATGAGAGTGGGGGATATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGTCGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 67322-67163 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLM010000011.1 Listeria seeligeri strain FSL W9-0276 NODE_11_length_104305_cov_62.349704, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 67321 29 100.0 36 ............................. CGACAAGCGTTCGATGTATGTAGAACTCACAGATCT 67256 29 100.0 36 ............................. AAAGATGGCGATTTTCTAGGCATGTGTTCCGACGAT 67191 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ==================================== ================== 3 29 98.9 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTAGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGTGTAGAAAACAAGGAGAATCGACAGAACATTGAATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAAGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCCGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGTATTTATCCCGCTACTTTTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGTGGAGGACATGACGCGGATAAAGTAAGTTCTATC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //