Array 1 27254-25823 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEE01000029.1 Schleiferilactobacillus odoratitofui DSM 19909 = JCM 15043 strain DSM 19909 NODE_182, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 27253 28 100.0 33 ............................ CTGCCATGTCACGAACGATATCGGCGTTAAATC 27192 28 100.0 33 ............................ CAAATAAAACTGGCTTTCGCAATATTTCAATCA 27131 28 100.0 33 ............................ TAGCTAGGCCTCATTTACTATCACTCCTGCGAG 27070 28 100.0 33 ............................ CTGATGTTGTCTTCACCACCGAACCAAATTGCA 27009 28 100.0 33 ............................ TGTTAAGGTCGCCGTTGATGTCACTATAATCTA 26948 28 100.0 33 ............................ TCTTTGATCGGGTGGAAGTTTTTAAATGGATTG 26887 28 100.0 33 ............................ TATGAATGCCAGAATGAATTCATGCTCATTTTG 26826 28 100.0 33 ............................ CTATACACCGGATATGACTAAAGCTCAGATGAA 26765 28 100.0 33 ............................ ACTCAATTTTATGGTCTAAGTGTTGCGCGTATA 26704 28 100.0 33 ............................ CTAACGGTACATGGGTATCGGCAAGTAAGGCGT 26643 28 100.0 33 ............................ CTACGTCAGCGCGACTAGCCCACTGGCCAAGGG 26582 28 100.0 33 ............................ CAGCTTGTATTTCATGGCTTCACCACTGATGTT 26521 28 100.0 33 ............................ CAACAAGGAACTAACTACTGATGAGTTTGGGAA 26460 28 100.0 33 ............................ TGCGACCCATCGTGAAAGGTCGCATCGAAATAT 26399 28 100.0 33 ............................ TCAGTCGCTGAACACATTATCAAAGCAGTTAAT 26338 28 100.0 33 ............................ CACATGAGCGTCAATCATGGTTTGATGAGTACA 26277 28 96.4 33 .................T.......... CGAACCCCCATTTTTTTGACGTGTTCAATTAAA 26216 28 100.0 33 ............................ CAACTGATCTCGTTATCGCACGTAAAAGTGAAT 26155 28 100.0 33 ............................ CACGAATCAAATCATTGAGTCCTTGTTTCTTGA 26094 28 100.0 33 ............................ TTTCATTCATCCCGCCTCCATCAAATTCGATGT 26033 28 100.0 33 ............................ TATCGCAGGGCCACTTCTTGGTGGGACTTGTAG 25972 28 100.0 33 ............................ CATCATGCTGCTTTGCTCAAAATGTCATCCGAT 25911 28 96.4 33 .......................A.... CATCAATACCTTCGACCAGGTTCGTTATCTCAA 25850 28 78.6 0 ...........AC..A......CA...T | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 33 GTATTCTCCGCGTATGCGGAGGTGATCC # Left flank : ACTTGAATTTGAAGATTATACTCCTGAAGAAATTGCTGAAATCGTTGTTGCAATCGTAAAGAAGGATTGGACTTTCAATGACGGTTTACTTAAGAGCATCGTCGTTAATAAATACAAGCAATTACCGGATGCTGAACGAAGTAACGGCCGTTGGGCACGTAACTTTGCTGACAAGCTGATTGCACAGCATAAACTTTGGCTTGGCGAACATCCAGATACAGAAGAAGTCACTGCAATCTCTGATGATTTGCTATTTGATAGCATGAGCTGGGAATAACCAACTTTAGTAGAAACTTAAAACAGATTTACTAGTTAACCGTTACGTACAATGGTTAGCTAGTAAATCTGTTTTTTAAATTCAAAATGAAATGTTTTTTTACAAGTCCATTCATGAACGAGATGACAGATTTTTTAGTCATGGTGGTATGATAAAAGTGTAAAGTGATTAAAAAGACGCTTATTCTATTTTAGAAATGCTGATGTGACGGTGATTATTTAGT # Right flank : AAAGGGACAGACTTGGGTCAACAATACAATTACAGTCTTTCTTACCATCAGAAGCATCTTCAACAGTAAGACAAAAATTTGCCCGTAATCTCTCCAACCAACGAAGAGATTACGGGCAAATGTGCATGTAATAGCACCGCCAACCAAAACGGTGCCACTAAATAAGGTAAAGGCGGATAGACGACAAGGAAGTAAATCGTCCACCTACAGCTCAAATCCTAGCACAACCCAGTATTAGATACAATGAACGCCATATACTACCAGGATGGCCAGCCTACTTGCCATGCTTCTCCCGCCACTGCAAATAAACATCGTACCAGCCAATAAAATGACTTAGGGTAATGGTAATTAACAGCGGCCATTTACTGCCGGGAAAGTAGGGGGCAACCAGAAGTGCCACGTTGTAAAATATCAGTTGTTCAAGAATCAAGCCTTTTGGATGAACACGGGTATCTACCGCTTCCCAGGCGATGCGTAGCATTTTTCGAAACATGAAATCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCGCGTATGCGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 34064-31034 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEE01000029.1 Schleiferilactobacillus odoratitofui DSM 19909 = JCM 15043 strain DSM 19909 NODE_182, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 34063 28 100.0 33 ............................ TCCAGTCAGAACCTAAGATTTGATCTAAGTGAA 34002 28 100.0 33 ............................ CGAACTTGATACTGCCAGCTTCTTCTTTGACAA 33941 28 100.0 33 ............................ TCTACCAACAGTCTTCAAAGCCAAAACAGAGAT 33880 28 100.0 33 ............................ CATCAGCTTCAAAGAGTGGCAAAAGTGGCTGCA 33819 28 100.0 33 ............................ TGCTCATGGCATCGCCCACGTTGAGCCAGTGCA 33758 28 100.0 33 ............................ CGCATGGTGTGAGTGATAAAGATATGGTTGAAG 33697 28 100.0 33 ............................ CATCAGCAGATGGTACGATCACTGTCACAGCAA 33636 28 100.0 33 ............................ CCTTGCTTGATAGCTTCGGTTGTGTGTGAAACT 33575 28 100.0 33 ............................ CGTGCAATTCCCTTATCCAGTTATTGCAGGGCA 33514 28 100.0 33 ............................ CGACTAAAGATGTCAGCACTCACTACATTCAAA 33453 28 100.0 33 ............................ TTAACACGATGATTTATGACTGGCAAAATTCAG 33392 28 100.0 34 ............................ TACACCGACTTACTTGTGACTGCAGCCGTGGTCA 33330 28 100.0 35 ............................ TAAGCAAATGAAAGGCATGAGTACCACTCAAAAGG 33267 28 100.0 33 ............................ TATCGCGTACACTTACTGGAAAGGTGCACACGG 33206 28 100.0 33 ............................ CGGTTCGGCAAAAATCACCTTGTTGATAAATGA 33145 28 100.0 34 ............................ TTTACGCCTAACCCGCAATGTTTCATACATTAAA 33083 28 100.0 33 ............................ TCTGTTTTAATGATTTTATACGTATCATAATCA 33022 28 100.0 33 ............................ CAGATTACTCCACGAACATCTTCATCAATCTCT 32961 28 100.0 33 ............................ CCAAATCTTGATGAACACGGCCACTTTCCGTCA 32900 28 100.0 33 ............................ TCTCTAACAACGTTCCTTTACCATTACCACCGT 32839 28 100.0 33 ............................ TTTTTTGGCGTTACTTGGTAGCGAATTGACCGA 32778 28 100.0 33 ............................ CTCAGTTGGATTCTCTTACCGGTACTGGCACAA 32717 28 100.0 33 ............................ CCATCATTGTAGCACTTGCCAAGTTTTTTAAGA 32656 28 100.0 33 ............................ TAACTGTTGTTCGGCGTCAATGATGGCGTTCAT 32595 28 100.0 33 ............................ CATCATTTTCAACCAACCAATCATGATAAAGCT 32534 28 100.0 33 ............................ TATCTACGTGTACGAAACTAAACGTGGCAAGCG 32473 28 100.0 33 ............................ CGTAACCCGCCAACTTCACCGGGACGCATTCCG 32412 28 100.0 33 ............................ TCAGTGGGCTGAGAAGTTTCGAGATAGCCCATA 32351 28 100.0 33 ............................ CCAAGTCAAGGTGCCGAACCAATTGGAACTTAT 32290 28 100.0 33 ............................ TATCACTGGTTGGCTGAAAGGTGCATGGGCCGG 32229 28 100.0 33 ............................ TAATGAGGCTTACGGCTCATTTTGTTTCTAAAA 32168 28 100.0 33 ............................ TAACCCGGTTACCAATGTTCAGACCGTCCAGAC 32107 28 100.0 42 ............................ CAAAAACTAGGAAGTGATCTTATGTCTGGGTTTGGTCACATT 32037 28 100.0 33 ............................ TACTCCAATTGCTCAGCATGGTGATTTCAGTCT 31976 28 100.0 33 ............................ CGACTGATTGACCAACTTTAAATAGGGTTTTAG 31915 28 96.4 33 .........................C.. CGCCCTGAAACGGGGCGTTTTTGGTAGAATAAG 31854 28 100.0 33 ............................ CAACGTGAGTATCATTTAATTTTTTAACGATTT 31793 28 100.0 33 ............................ CTGGTGTAACTTACTGTAATTTTATTTAAACGG 31732 28 100.0 33 ............................ CTTTGGTTGTTGTCCATTCTGGTTAAGTAGTTC 31671 28 100.0 33 ............................ CATGCCAAACTCAAACAAAATTATCACGGTAAC 31610 28 96.4 33 ..........................T. CGGCTCTGGTAGGCGCTCAATTTTAACCGTAAA 31549 28 100.0 33 ............................ CAATAAATCTAAGATAACCTTGTGAGTTGTTAT 31488 28 100.0 34 ............................ CCGAGAAGCCTATTATTATAATTCCGTTAATAAA 31426 28 100.0 33 ............................ CTAAAATATGATGGTAAAAAAGTTCAAAAAAGT 31365 28 100.0 33 ............................ CGTTATTTCAAAAGTGGTTGGGGTAAGCAAGTG 31304 28 100.0 33 ............................ CCTGATTGATGTGGCTACGGATACCCCAATGTT 31243 28 100.0 33 ............................ TCAGTAGCCATGTTCCGTTGCTTTTCTGGTGTG 31182 28 100.0 33 ............................ CGTCAGCCCCGTGGATAGCGATGACTTTTTCAA 31121 28 100.0 33 ............................ CGTGTACCGAGTGCCAACACCAATATCGTTCAA 31060 27 85.7 0 ......................-..AAT | ========== ====== ====== ====== ============================ ========================================== ================== 50 28 99.6 33 GTATTCTCCGCGCATGCGGAGGTGATCC # Left flank : TATCTATGCTAATGTCGGTAAGTTTAACGCTGTTCAAGGTACCACCGACAAATGGGGTACCCGTTATTCAGTGGATATTCCTCTAAAAGGACCTAACGGGCAACGACATAAGGTTCGAACTGCGTGGATGGTCAATGAAAAGGGCATTCCTCGACTAATATCACTTTACGTAAAGGAGAAAAAACGATGAATACTGATAACCAGCTTGACCCAACAAAATTAATCACTCAACTGGACGCGGTTGAGTTCCCATATCATAAAAAGCTGGTGTGGGGTACAGTATTAGAAATCTCGACGGATAGTCTGCTTGTTGATCTCCAAGTAGGCGATGATTATGTGCAGGTTGACGTTCCGCGTAAGGATGTAACCCATGTCGTTCAACAAGATAACTAAAAACATACTGCTTTAGCACTCCATTGTGAGTGTTTTTTTTATGCCCTTTTCCGTGTGTTGCGGGCCTTAAAGAACAACCTGAGTTAGTCTCCCACGACTTTAAATGC # Right flank : ACATCACTTAAATCACCATAAGTTAGCCTTTTATAGGTTGGTGTAATTTAGTGAGTACTGTGACTGTGGCATATCAGAAGAAATGTTTGGTGGTTATGATTGTTGTGATTGCGTACAGTTTTATGTTTCTTTAAACATCAGCCGCACTATCTAACAAAAAACTAGATGGTGCGGCTTGGTTCATCAAAAATCAATACATTAAAGTAATCGGTTAAATCTAAAAGCTAATTCGGTCATTCAGTGTCGCATTGTGAACTGTCAACAAATTGTAATAATTAAAAATTAAGTTTACGATAAAAATATTTAACAAATGCGGTAAAATGGATGAATAGCAAATCTTAGGGATTTTCAAAAAAGGGGAAATAGAGTTATGGATAATAAGCCAAAGTTTGGAATTAACGCAGATTCACCAGAGGACAAGCCGACTGAACCAACAGTCACGCCGAATTCCTCACAACAACCACAATTTGGGACTGGGGCAGCAAATACAGAGGCAACAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCGCGCATGCGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 3 35939-36515 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEE01000029.1 Schleiferilactobacillus odoratitofui DSM 19909 = JCM 15043 strain DSM 19909 NODE_182, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35939 28 100.0 33 ............................ CTCATACCAGAGCCAACCAACTCTTGCACGATA 36000 28 100.0 33 ............................ AGCATGGGTGACAAGCTAAAGTACACGCAATTG 36061 28 100.0 33 ............................ GTAAGACGAGTGATACTGGTAAAGGTGCTGCTG 36122 28 100.0 33 ............................ AGGCTGATGAACAAGCTGATGCACCAACTAATG 36183 28 100.0 33 ............................ AATTCTAGTGTCAATTTCTCATCCCCTTACATA 36244 28 100.0 33 ............................ CTCAGATCACAAGCCTGCGTTGATCCTGAACCA 36305 28 100.0 33 ............................ TCACTCGATTTGAGCTGACCAATGGGCTGTTTA 36366 28 100.0 33 ............................ ATAGATAAAGTTAAGGTTGTCGTCAACCTTTAG 36427 28 100.0 33 ............................ TCCACCTATTTTTCTAAGGTTGGGACGTGGTGA 36488 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 33 GGATCACCTCCGCATGCGCGGAGAATAC # Left flank : AGAGACACGGGCACTGGCTTGTGCAATCGACAACCTATTCTTATCAGCATATTGCTGATAGAACTGTAGCAAATGGTCGCGAATATAGGCTAATGCCTCATCGTAATACTCATCTGTTTTCTTGTCCGTTTGGTTGTCCAGCCGAATCAGTTGATTCATCCGTTGCTTTTGCTGCACTATCGTCAGTGGCATTTGCTACACCACCCTTCTGTTGGTCAGTCAGGTAGCTTTGCACGACATTGGCTGTCGTTTGTTGGTCGTGTTCTTGCTGCTCGTGCAGTCGGTCAACTTCCTTTTGTGGATCGTCGATACCAGACAGGTAGCTCAACTTGGTTGGGTCACTGACTTGTCCGTTCAGAGTAGCCACAATCGTAGCTTCCTCACTCACATTGTGTGGAATTGATTGCTTATGGTCGAACGTCAGGTCAGTTACTTCACCAGACCAGTTGTTGTATGCAAACACAATTTTAAACAACTGGCGTAAAGCGCGGTCCATTTTG # Right flank : CACTAAAAAATCCCTACAACCACGCCATTCTTAAATTTGCAAATTGCCATTTTCAATCAGTTTGGTCGCCAATTTCAATGTTGCTCTCGCATCCGAAAGTGCATGATGTGGTGACGGATTTTCAATTGAATAGTTTGATAAAGTCGTCATTAATCGATAGTTATCTAAAAATTGATTAGTTTTCTTTACCACTGGCAACAAATCGATTCTACGATTCGTCAATTCGGTTATGGCGTTTTTTTCAAATCCAGTCGTTAAAAATTCATCATCAAACCGCAAATTATACCCACAAATAGGTAAATCACCAACAAACTGCTTCAATTGTTCTAAAGCAGATGTTAATGATATGCCCTGTGAATCTAAATCATGATTTGATATTCCCGTCAACTCTGTAATGGCTTCCGGAACGTCTAATTTAGTTTTTACTAAAACATCAAAATCCTCAAATTTACCTGTCTTACCCATTTTTACAGCACCGATTGAAATAATTGCATCTTTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCTCCGCATGCGCGGAGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 4 49990-46367 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZEE01000029.1 Schleiferilactobacillus odoratitofui DSM 19909 = JCM 15043 strain DSM 19909 NODE_182, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================================================== ================== 49989 28 100.0 33 ............................ TGAGTAACCCTGCTAACGCCATTGCTAGTCGTT 49928 28 100.0 33 ............................ CTAATTCAGCTGAATCTTTGACTGCATCGGCCA 49867 28 100.0 33 ............................ CGGTGAAACTGATTTGTGGGAAAGCTCATACCG 49806 28 100.0 33 ............................ TTGTTTTTTTAAACCGGGTACTTCTGAGGTTGA 49745 28 100.0 33 ............................ CGTTATCAGTGGTCCATGATACCGAGGCCATAT 49684 28 100.0 33 ............................ CTTAGTCAGGGTAGGCATCCAAGCTTGCGCGAT 49623 28 100.0 33 ............................ TGACTTTAGTGGACCAGTTGGTTCTGCTTTTAA 49562 28 100.0 33 ............................ CACACAATTCAGCAGCTTAAAGATGCTGGTATA 49501 28 100.0 33 ............................ TTAATCGGCATCAGCGCGGTTATCTGTTGATTG 49440 28 100.0 33 ............................ TACGTGAACCAACCTTTGGTAATTCTTTGCCAA 49379 28 100.0 34 ............................ CTTTGACGCTTATGTCGTCAATCCGGATGACTTG 49317 28 100.0 33 ............................ CATCTGTCCCAGCATCGACATATCGTCTAAATA 49256 28 100.0 33 ............................ CTGCCATCTATTTCGCCCCCGTTGCTTGTCCCT 49195 28 100.0 33 ............................ CTCAGCTTGCTTGGCCTGTGTCTTGGTGTCAGT 49134 28 100.0 33 ............................ CTTAACACCAAATAATTGGGAAAACATTACAGA 49073 28 100.0 33 ............................ CCATGCGGATTCCAGCTGATGCGACTTACCGTG 49012 28 100.0 33 ............................ TTGCTCACCTTCCTTCCAGCCACTCAATAACCG 48951 28 100.0 33 ............................ CAATGCCGCCGTCACGGTATCTTTTCCCGCTGT 48890 28 100.0 34 ............................ TAAAGTATATCGCCTCATTATCATCACCTCTCTA 48828 28 100.0 33 ............................ CAATGCCGCCGTCACGGTATCTTTTCCCGCTGT 48767 28 100.0 33 ............................ CCAGTGCAGCGAACGGTTTAGCAGCATACTGAG 48706 28 100.0 33 ............................ CCAAAATGTATCAAATTTTGAATCTTTTTCGAA 48645 28 100.0 33 ............................ TTGAAATCGTAGTTGAAACTAATACATTTTCAA 48584 28 100.0 33 ............................ CAATATAATCGCTATAATTTTCTTCAGTAATTT 48523 28 100.0 33 ............................ CCCGTCACAACCATACATACCCTACACACTTAC 48462 28 100.0 33 ............................ CCACTTTGAGATGGACGACAACACGTTCTTGAG 48401 28 100.0 33 ............................ TTGCGATTAGCGTCTTGAACATCATAAGGCAAT 48340 28 100.0 33 ............................ TAACAGTTTGAAATACAAGTCAGCTTCGCCCTG 48279 28 100.0 33 ............................ CGATAACGGACTTGGCAAGCGAATTGCCAGTGA 48218 28 100.0 33 ............................ CGATTGATCAGTCGTGATTTGGTGCCACTCAAA 48157 28 100.0 33 ............................ CTGCTAAAGATTTTGAATACTATTTGAACTTAA 48096 28 100.0 33 ............................ CGCCTGTATATCAAGCGTAAAAAGCAAAAAGAA 48035 28 100.0 34 ............................ TACCTACTAAAATACGATTCAGAACTTGAAGGCA 47973 28 100.0 34 ............................ TGATATCTTGGGGAACATTTGGGGTACAAATGCC 47911 28 100.0 33 ............................ CATTCCCGGAACAGTACCGTATTTATTTAGGTC 47850 28 100.0 33 ............................ TGCTACAATCTTTTCATTATCTGGTTCATTGCG 47789 28 100.0 33 ............................ TCAAACAAACTTGGCACCGGACTAAGATACACA 47728 28 100.0 33 ............................ CAAACTCAGGCATCGGGCTAATTTGTTGATTCA 47667 28 100.0 33 ............................ CTGGAAATATTATCTAAGAAACATCTTTTCATT 47606 28 100.0 33 ............................ CCGATGGGTTGGGTTGATGAGGATGCTGAGGCG 47545 28 100.0 33 ............................ CCCTGTTGCACTGGGCTTAGGCGGTATCTTTTT 47484 28 100.0 33 ............................ CACACTTTTTCCTTAAATAGTTCTCGTACCATT 47423 28 100.0 33 ............................ TGAAAAAGCTATCCAGCAGTAAGACCTATCAGG 47362 28 100.0 33 ............................ CAAATTGTCTTCAAACTCGTTCTACCACAATTA 47301 28 100.0 33 ............................ TACGTGTAGCGGCCGCCGTTGGTTTGCGAAAGT 47240 28 100.0 33 ............................ CAAACCGTTCAGTTTGTAGAATTTTAGTCACTG 47179 28 100.0 33 ............................ CCAGTTGCCAGCTACTTGCTTGCTGGCGTCGAT 47118 28 100.0 33 ............................ AGGTACTGGCTAAACATGACGGCCTTTTCGGGT 47057 28 100.0 33 ............................ CGAGGCACTTAACCAACTTAGACAGGCCTGCAA 46996 28 100.0 33 ............................ TAAGGGCAGTGTTTTCTTTAATCTTCATAGCGA 46935 28 100.0 33 ............................ CGCAAAAACTCATCGTCACTATCTGGGCGAGCT 46874 28 100.0 35 ............................ CAAGCTCACCATCACCAATAACAAATCGATTAAGT 46811 28 100.0 33 ............................ CGACGGTTTTGGTAGTAGGTTGGTCCATGGTCG 46750 28 100.0 33 ............................ CAGTATTGAACCAGTTTCAGTTGGCTTGTGTGA 46689 28 100.0 34 ............................ TTATGCCTGGAATCGTTCACGGTCTCCACATCAA 46627 28 100.0 83 ............................ TAGCCTCGCGGTCATTTTGAGCTGCTTCCAGATGTATTCTCCGCTGATCCTCTCAATCGTGGTCAGCTTGGCGGTGTCTAGCG 46516 28 92.9 33 ...........G..............T. TCCCCCAAAAACCGTCGCAAAAAGAGCAAGCTC 46455 28 96.4 33 ..........................T. CAAAGGTGGGGTAGCGAAGACAACCAGTGCAAT 46394 28 85.7 0 ..........T.A.........C...T. | ========== ====== ====== ====== ============================ =================================================================================== ================== 59 28 99.6 34 GTATTCTCCGCACATGCGGAGGTGATCC # Left flank : AGTTATCCGGATTGCCAGCAACTCGACATGGCCTGGTCGTTGAGTAAGTCTGCAACTACGGACTTACAACTAAGACAGTTGATTATGCCAACACTAACTCGATTGAAGAATGAAATGATAACTGCGAATAAGAATGAAAATCCTCGAAAACTGTATGGCTTCGCTGCTCATCGCGCGTTAGCCTATAAGAAACAGTGGTTACGTCAAGTTAAGAATAGTGTGCATTTTCCTGCGAGTGTTAGGAAATATGCTGCTGATTTGTTAGGGGAGTCGATTTTTGGTGAATAATAGTTTTTTATATTTACGAGTTGGGAAATTAAGTTGGATATATTTACGTAGTTATTAATTGTGAGGATTAAGTGTCGAGATCTTTATTTGATGGATTTAAAAGATGTTGTAATATACTTGTTTTAAGAGATAGCCTAAATTAGTTGAACGAAACTGATTAAAAAAGTGTGTTTGGCAATTTTAGAATGTTGATATAATGGGATTTGTTTAGT # Right flank : AATCACCACTGCAAACGCACACGAATCGTGTTTTCCATACAATTCAATAAGGAGGTGGGTCTATGCGGCCAATGAGTCCCGCTGAAGTAGCAGCAATTCCAGACGAGCAATTAATTTTTGCGTACTGCGAATTTTTCAGCATTGCTTATCCAATTTATTTAAATGATACCGATGTTGTGCACCACATTCGTGAAGCGCTTTTAACTGGAAAACCCTTTGAACCGGTAATAGAACCTGGTATTGATTATTGAAAATTAGTCAACCTAATCAAAATAATGATATACTCATTTTGTGATATGTTGTTCCTCGCTGTGCGAGGGTGATCCAATTGTTTTTACTAGAGCGAAAGTATTCCCTGCATTAGCAGGTGTTGAAAACAACTATTAACGAAATTCAGGTATAAATACTTGAAATTTTAGCGATAGTTGTTTATGCTTTAGGTAAATTTAGATAACATTGTATTTACCAGAAAGAAGACAAACGAAATGGCAAACACCAAT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCGCACATGCGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //