Array 1 433442-434567 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNR01000015.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N51282 N51282_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 433442 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 433503 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 433564 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 433625 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 433686 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 433747 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 433808 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 433869 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 433930 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 433991 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 434052 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 434113 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 434174 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 434235 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 434296 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 434357 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 434418 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 434479 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 434540 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 450826-452489 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHNR01000015.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N51282 N51282_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 450826 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 450887 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 450948 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 451009 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 451076 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 451137 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 451198 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 451259 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 451320 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451381 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 451442 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 451503 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 451564 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 451625 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 451686 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 451747 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 451808 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 451869 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 451930 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 452033 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 452094 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 452155 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 452216 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 452277 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 452338 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 452399 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 452460 29 96.6 0 A............................ | A [452486] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //