Array 1 521144-523246 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKM01000002.1 Salmonella sp. gx-h1 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 521144 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 521205 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 521266 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 521327 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 521389 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 521450 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 521511 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 521572 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 521633 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 521694 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 521755 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 521816 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 521877 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 521938 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 521999 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 522060 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 522121 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 522182 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 522243 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 522304 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 522365 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 522426 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 522487 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 522548 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 522609 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 522670 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 522731 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 522792 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 522853 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 522914 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 522975 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 523036 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 523097 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 523158 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 523219 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 540879-542860 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCKM01000002.1 Salmonella sp. gx-h1 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 540879 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 540940 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 541001 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 541062 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 541123 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 541184 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 541245 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 541306 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 541367 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 541428 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 541489 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 541550 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 541611 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 541672 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 541733 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 541794 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 541855 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 541916 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 541977 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 542038 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 542099 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 542160 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 542221 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 542282 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 542343 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 542404 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 542465 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 542526 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 542587 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 542648 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 542709 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 542770 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 542831 29 100.0 0 ............................. | A [542858] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //