Array 1 1039-1306 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTXR01000269.1 Pseudomonas aeruginosa strain JM03 NODE_270_length_1318_cov_2.526448, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1039 28 100.0 32 ............................ AGCAACACCGGCGACTACTCGGCAGCCAGCAA 1099 28 100.0 32 ............................ TTGCAGCAACCGATCTACGCGTCTGCGACAAC 1159 28 100.0 32 ............................ ACCAGGGTGGCGCTGGCGATCTTGCTGTCATC 1219 28 100.0 32 ............................ AGCAACACCGGCGACTACTCGGCAGCCAGCAA 1279 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCTGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : AGCAACACCGGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-1288 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTXR01000045.1 Pseudomonas aeruginosa strain JM03 map unlocalized plasmid p1 NODE_45_length_47471_cov_3.323906, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 28 100.0 32 ............................ AGCAACACCGGCGACTACTCGGCAGCCAGCAA 61 28 100.0 32 ............................ AGCAACACCGGCGACTACTCGGCAGCCAGCAA 121 28 100.0 32 ............................ ATCGAGTTCGTCCGCCTCCGAACCCATCAGTT 181 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 241 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 301 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 361 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 421 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 481 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 541 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 601 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 661 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 721 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 781 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 841 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 901 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 961 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 1021 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 1081 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 1141 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 1201 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 1261 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : | # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10921-9813 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTXR01000045.1 Pseudomonas aeruginosa strain JM03 map unlocalized plasmid p1 NODE_45_length_47471_cov_3.323906, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10920 28 100.0 32 ............................ TATTGGTTACCCAATTTGGCATTTCGTTTTCC 10860 28 100.0 32 ............................ AGGATGAAGAGGTACAGCAGTCCTCCGAAGAG 10800 28 100.0 32 ............................ AGCAACACCGGCAACCGCTCGGCAGCCAGCAA 10740 28 100.0 32 ............................ TTCTGGATTCAATGCGGTCTCTGTAACACGCA 10680 28 100.0 32 ............................ AGCAACACCGGCAACCGCTCGGCAGCCAGCAA 10620 28 100.0 32 ............................ AGCAACACCGGCAACTACTCGGCAGCCAGCAA 10560 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 10500 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 10440 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 10380 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 10320 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 10260 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 10200 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 10140 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 10080 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 10020 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 9960 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 9900 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 9840 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //