Array 1 17366-18721 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLSL01000038.1 Streptococcus iniae strain QMA0078 NODE_13_length_50056_cov_60.4098_ID_1643, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17366 36 100.0 30 .................................... AAGCGGAACAGATGACAATATATGATTTTT 17432 36 100.0 30 .................................... GCTGAAAAGACTGCTGTACTCGTTGGAATA 17498 36 100.0 30 .................................... TAGATCCCCGCATTTTTGACGAAAAAGCTC 17564 36 100.0 30 .................................... GGTCAGATACGCTCAAGGTCAAACAATTGT 17630 36 100.0 30 .................................... GCACTAGCAACAGACCAAGACTCGCACGGA 17696 36 100.0 30 .................................... TGCAACAAATAGCCTTATTATTGCTTTTAA 17762 36 100.0 30 .................................... TCCTTTTTGAGTAAAAGCTATTGTCTCATT 17828 36 100.0 30 .................................... TATACGACTATAAACAGTTGCCAGCTTCAT 17894 36 100.0 30 .................................... TATGGAAAATGTTGACTTCCACGGTAAATC 17960 36 100.0 30 .................................... TAGATCCCCGCATTTTTGACGAAAAAGCTC 18026 36 100.0 30 .................................... CGAAAGGTACTATAACCGATGAAGATATTA 18092 36 100.0 30 .................................... ACAATTATTTTATGTCAGATATTGATGAAT 18158 36 100.0 30 .................................... GTGTTCGCCGAATAAGTAGAATTAAGAAGC 18224 36 97.2 30 ..........................C......... CCTGCAAAAGATTCATATGCGATTAGTTAT 18290 36 100.0 30 .................................... CAAGTCTTGCAACAACAAGTATCCACTACA 18356 36 100.0 30 .................................... ATATATATCAATGGAAATACCAAAACGTTT 18422 36 100.0 30 .................................... TTAATTCCTTGGTTGTCAGTGTAATAGATA 18488 36 100.0 30 .................................... CGGTTTAGCTGCTCTTGAGAAGATTGTATT 18554 36 100.0 30 .................................... TTAGTATTAAATATAATATCAACACCTTTA 18620 36 100.0 30 .................................... TACAACAGTACCTATAAGTGTGGCTACACC 18686 36 75.0 0 ................T.....TG..T.T.TTT..G | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 98.7 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTAAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG # Right flank : GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //